Wall clock time and date at job start Tue Mar 31 2020 19:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47302 * 2 1 4 4 H 1.08996 * 109.70204 * 298.51888 * 3 2 1 5 5 C 1.53192 * 109.58587 * 58.88102 * 3 2 1 6 6 C 1.53049 * 109.31161 * 174.42458 * 5 3 2 7 7 C 1.53041 * 109.53527 * 298.63148 * 6 5 3 8 8 C 1.52768 * 109.38345 * 61.24086 * 7 6 5 9 9 N 1.46923 * 109.00918 * 305.58858 * 8 7 6 10 10 C 1.34778 * 120.62940 * 233.58350 * 9 8 7 11 11 O 1.21347 * 120.00016 * 185.32445 * 10 9 8 12 12 C 1.49455 * 120.00026 * 5.05688 * 10 9 8 13 13 O 1.21349 * 120.00057 * 82.88864 * 12 10 9 14 14 N 1.34773 * 119.99676 * 262.89788 * 12 10 9 15 15 C 1.47080 * 120.88152 * 4.77553 * 14 12 10 16 16 C 1.53702 * 108.27675 * 128.75958 * 15 14 12 17 17 N 1.46904 * 109.25370 * 54.08129 * 16 15 14 18 18 C 1.46900 * 110.99773 * 172.60957 * 17 16 15 19 19 C 1.50706 * 109.47168 * 50.32833 * 18 17 16 20 20 H 1.08000 * 120.00025 * 5.20328 * 19 18 17 21 21 C 1.37873 * 120.00139 * 185.19721 * 19 18 17 22 22 N 1.31521 * 119.99928 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00294 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46960 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47034 * 120.00100 * 23 21 19 26 26 H 1.48499 * 109.47427 * 240.00591 * 23 21 19 27 27 C 1.46896 * 111.26888 * 296.75701 * 17 16 15 28 28 C 1.47082 * 120.87972 * 185.06162 * 14 12 10 29 29 H 1.09000 * 109.47529 * 304.83866 * 1 2 3 30 30 H 1.09009 * 109.46973 * 64.83949 * 1 2 3 31 31 H 1.08998 * 109.47387 * 184.83163 * 1 2 3 32 32 H 1.09002 * 109.47554 * 239.99440 * 2 1 3 33 33 H 1.09003 * 109.47155 * 119.99957 * 2 1 3 34 34 H 1.08995 * 109.49458 * 294.37016 * 5 3 2 35 35 H 1.08996 * 109.50057 * 54.44285 * 5 3 2 36 36 H 1.08997 * 109.45685 * 58.64925 * 6 5 3 37 37 H 1.08998 * 109.45961 * 178.60819 * 6 5 3 38 38 H 1.09004 * 109.49542 * 181.31591 * 7 6 5 39 39 H 1.08997 * 109.49890 * 301.38473 * 7 6 5 40 40 H 1.08998 * 109.50880 * 185.69912 * 8 7 6 41 41 H 1.09008 * 109.43036 * 65.42495 * 8 7 6 42 42 H 1.08999 * 109.62930 * 248.52745 * 15 14 12 43 43 H 1.08996 * 109.63009 * 9.10960 * 15 14 12 44 44 H 1.09005 * 109.64472 * 294.08243 * 16 15 14 45 45 H 1.08997 * 109.44356 * 173.96529 * 16 15 14 46 46 H 1.09000 * 109.47247 * 170.32734 * 18 17 16 47 47 H 1.08999 * 109.47208 * 290.33663 * 18 17 16 48 48 H 0.96996 * 119.99925 * 179.97438 * 22 21 19 49 49 H 1.08995 * 109.49671 * 303.14399 * 27 17 16 50 50 H 1.09003 * 109.51350 * 183.07608 * 27 17 16 51 51 H 1.08998 * 109.62514 * 350.88798 * 28 14 12 52 52 H 1.08999 * 109.62964 * 111.28149 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.7005 1.9522 -0.9016 5 6 1.5079 2.1753 1.2356 6 6 2.1317 3.5712 1.3038 7 6 3.6515 3.4468 1.4332 8 6 4.2077 2.7277 0.2055 9 7 3.5086 1.4456 0.0442 10 6 4.2011 0.2937 -0.0557 11 8 3.6191 -0.7462 -0.2851 12 6 5.6864 0.2978 0.1103 13 8 6.1728 0.2708 1.2217 14 7 6.4855 0.3318 -0.9744 15 6 5.9196 0.4701 -2.3249 16 6 6.6453 1.6235 -3.0359 17 7 8.0941 1.3848 -2.9915 18 6 8.8151 2.3696 -3.8090 19 6 8.3566 3.7580 -3.4436 20 1 7.6679 3.9010 -2.6240 21 6 8.8164 4.8455 -4.1554 22 7 9.6547 4.6713 -5.1537 23 14 8.2475 6.5663 -3.7030 24 1 7.3119 6.4917 -2.5522 25 1 9.4229 7.3946 -3.3320 26 1 7.5559 7.1805 -4.8647 27 6 8.5917 1.3824 -1.6094 28 6 7.9462 0.2253 -0.8396 29 1 -0.3634 0.5871 0.8434 30 1 -0.3633 0.4370 -0.9302 31 1 -0.3634 -1.0240 0.0866 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.4238 2.2643 1.1669 35 1 1.7709 1.6146 2.1325 36 1 1.8885 4.1223 0.3954 37 1 1.7359 4.1039 2.1685 38 1 4.0930 4.4408 1.5052 39 1 3.8948 2.8748 2.3286 40 1 5.2742 2.5480 0.3410 41 1 4.0486 3.3445 -0.6791 42 1 6.0663 -0.4563 -2.8801 43 1 4.8551 0.6936 -2.2548 44 1 6.4162 2.5645 -2.5355 45 1 6.3165 1.6742 -4.0738 46 1 9.8858 2.2804 -3.6250 47 1 8.6110 2.1856 -4.8637 48 1 9.9779 5.4364 -5.6548 49 1 8.3356 2.3267 -1.1290 50 1 9.6746 1.2579 -1.6125 51 1 8.2221 0.2868 0.2131 52 1 8.2836 -0.7257 -1.2517 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601416743.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:29 Heat of formation + Delta-G solvation = -69.476805 kcal Electronic energy + Delta-G solvation = -31781.380482 eV Core-core repulsion = 27780.435623 eV Total energy + Delta-G solvation = -4000.944858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.39826 -40.68732 -39.13916 -38.53840 -36.17690 -35.23936 -34.33210 -34.00262 -32.24878 -30.42330 -30.10953 -27.91989 -26.84385 -25.36769 -24.94654 -24.63364 -23.56121 -22.26724 -22.00619 -21.09067 -19.82661 -18.95748 -18.27940 -17.91197 -17.76063 -16.78016 -16.42557 -16.19924 -16.13380 -16.02739 -15.63529 -15.56249 -15.49879 -15.13636 -15.02213 -14.66927 -14.49296 -14.28537 -14.13866 -13.85654 -13.68486 -13.55355 -13.30054 -13.01714 -12.92490 -12.70827 -12.62492 -12.51914 -12.26074 -12.20315 -12.16840 -12.06220 -11.86055 -11.77381 -11.73780 -11.60646 -11.52494 -11.46602 -10.60702 -10.17230 -10.00726 -9.81884 -9.06791 -8.15404 -6.34234 0.88197 0.96036 1.37213 1.39834 1.40670 1.49610 2.11828 2.37937 2.94687 3.10942 3.24925 3.61868 3.74360 3.83746 3.85464 3.95185 3.99226 4.13820 4.16354 4.20219 4.28195 4.31842 4.42574 4.47574 4.48999 4.53635 4.62947 4.66080 4.76970 4.81196 4.83949 4.89207 4.97119 4.99792 5.06649 5.09788 5.12999 5.15621 5.25250 5.27995 5.29044 5.29829 5.36109 5.42150 5.62293 5.74726 5.92080 5.95735 6.03199 6.22182 6.43131 6.59181 6.65333 6.85527 7.37690 8.87732 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.003742 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.521371 B = 7481.061455 C = 8621.751843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C 0.140 3.860 4 H 0.096 0.904 5 C -0.128 4.128 6 C -0.116 4.116 7 C -0.132 4.132 8 C 0.100 3.900 9 N -0.584 5.584 10 C 0.520 3.480 11 O -0.528 6.528 12 C 0.510 3.490 13 O -0.553 6.553 14 N -0.588 5.588 15 C 0.120 3.880 16 C 0.060 3.940 17 N -0.539 5.539 18 C 0.201 3.799 19 C -0.554 4.554 20 H 0.059 0.941 21 C 0.015 3.985 22 N -0.925 5.925 23 Si 0.953 3.047 24 H -0.263 1.263 25 H -0.283 1.283 26 H -0.279 1.279 27 C 0.055 3.945 28 C 0.122 3.878 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.033 0.967 45 H 0.081 0.919 46 H 0.006 0.994 47 H 0.013 0.987 48 H 0.264 0.736 49 H 0.022 0.978 50 H 0.084 0.916 51 H 0.093 0.907 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.807 -3.681 10.767 21.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C 0.039 3.961 4 H 0.114 0.886 5 C -0.166 4.166 6 C -0.153 4.153 7 C -0.171 4.171 8 C -0.022 4.022 9 N -0.318 5.318 10 C 0.302 3.698 11 O -0.405 6.405 12 C 0.293 3.707 13 O -0.432 6.432 14 N -0.321 5.321 15 C -0.002 4.002 16 C -0.069 4.069 17 N -0.262 5.262 18 C 0.075 3.925 19 C -0.593 4.593 20 H 0.077 0.923 21 C -0.185 4.185 22 N -0.565 5.565 23 Si 0.778 3.222 24 H -0.188 1.188 25 H -0.209 1.209 26 H -0.204 1.204 27 C -0.074 4.074 28 C 0.000 4.000 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.051 0.949 45 H 0.100 0.900 46 H 0.024 0.976 47 H 0.031 0.969 48 H 0.073 0.927 49 H 0.040 0.960 50 H 0.102 0.898 51 H 0.111 0.889 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.672 -4.619 10.890 21.266 hybrid contribution 0.480 1.676 0.255 1.762 sum -17.192 -2.943 11.144 20.698 Atomic orbital electron populations 1.21919 0.94102 1.02237 1.02739 1.21946 0.96162 0.94087 1.02945 1.21737 0.76120 0.98087 1.00204 0.88598 1.22062 1.01990 0.95967 0.96553 1.21542 0.93404 0.96653 1.03741 1.21829 0.97708 1.01099 0.96416 1.21883 0.95846 0.83743 1.00719 1.48310 1.08035 1.05819 1.69588 1.20118 0.87379 0.84884 0.77410 1.90826 1.68328 1.32637 1.48705 1.20635 0.88327 0.76831 0.84870 1.90749 1.75642 1.51538 1.25248 1.48332 1.07781 1.69222 1.06771 1.22121 0.97167 1.00181 0.80778 1.22276 0.88591 0.95455 1.00626 1.62401 1.03891 1.49929 1.10020 1.19438 0.92704 0.87898 0.92485 1.21984 1.27771 0.93431 1.16144 0.92303 1.25764 0.94904 1.03113 0.94734 1.70064 1.33016 1.32011 1.21362 0.85582 0.78248 0.79919 0.78404 1.18751 1.20905 1.20429 1.22253 0.99930 0.96181 0.89070 1.21889 0.77222 0.99493 1.01430 0.91305 0.91681 0.92659 0.90928 0.93791 0.87813 0.92636 0.90334 0.89854 0.89102 0.92561 0.92015 0.88912 0.89072 0.89329 0.94894 0.90022 0.97589 0.96887 0.92662 0.96005 0.89765 0.88871 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.67 71.98 0.70 -1.48 16 2 C -0.11 -2.36 3.90 30.59 0.12 -2.25 16 3 C 0.14 2.56 3.03 44.97 0.14 2.70 16 4 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 5 C -0.13 -1.80 4.82 30.67 0.15 -1.65 16 6 C -0.12 -1.49 5.89 30.62 0.18 -1.31 16 7 C -0.13 -2.31 6.06 30.53 0.19 -2.13 16 8 C 0.10 2.19 6.33 86.22 0.55 2.74 16 9 N -0.58 -13.77 2.98 -797.40 -2.38 -16.15 16 10 C 0.52 15.41 5.38 87.27 0.47 15.88 16 11 O -0.53 -17.16 12.65 -3.24 -0.04 -17.21 16 12 C 0.51 16.68 5.48 87.27 0.48 17.16 16 13 O -0.55 -20.86 16.54 -3.24 -0.05 -20.92 16 14 N -0.59 -18.07 3.00 -818.61 -2.46 -20.53 16 15 C 0.12 3.41 6.51 86.51 0.56 3.97 16 16 C 0.06 2.06 4.99 86.54 0.43 2.49 16 17 N -0.54 -21.07 4.83 -898.85 -4.34 -25.41 16 18 C 0.20 9.82 5.20 85.56 0.45 10.27 16 19 C -0.55 -28.56 7.83 25.60 0.20 -28.36 16 20 H 0.06 2.97 5.91 -2.91 -0.02 2.95 16 21 C 0.01 0.78 5.46 84.65 0.46 1.24 16 22 N -0.92 -52.67 13.29 21.45 0.28 -52.38 16 23 Si 0.95 41.46 29.54 68.60 2.03 43.49 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 27 C 0.05 1.94 5.36 86.38 0.46 2.41 16 28 C 0.12 3.68 6.61 86.35 0.57 4.25 16 29 H 0.07 0.78 6.29 -2.39 -0.02 0.77 16 30 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 1.84 6.24 -2.39 -0.01 1.82 16 33 H 0.04 1.13 7.24 -2.39 -0.02 1.11 16 34 H 0.10 1.00 6.63 -2.39 -0.02 0.99 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 1.66 6.31 -2.39 -0.02 1.64 16 41 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.09 2.44 8.14 -2.39 -0.02 2.43 16 43 H 0.09 2.29 6.44 -2.39 -0.02 2.28 16 44 H 0.03 1.24 6.36 -2.38 -0.02 1.22 16 45 H 0.08 2.85 8.11 -2.39 -0.02 2.83 16 46 H 0.01 0.31 7.89 -2.39 -0.02 0.30 16 47 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 49 H 0.02 0.85 7.51 -2.39 -0.02 0.84 16 50 H 0.08 2.92 7.95 -2.39 -0.02 2.90 16 51 H 0.09 2.81 7.04 -2.39 -0.02 2.80 16 52 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -64.68 392.62 0.04 -64.64 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.90 Total: 18.54 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 6.10 Total: 25.92 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -8.89 Total: -114.47 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.09 Total: -38.12 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -64.68 0.04 -64.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601416743.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.832 kcal (2) G-P(sol) polarization free energy of solvation -64.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds