Wall clock time and date at job start Tue Mar 31 2020 19:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47784 * 2 1 4 4 H 1.08999 * 109.70215 * 58.59929 * 3 2 1 5 5 C 1.52768 * 109.50657 * 298.48712 * 3 2 1 6 6 C 1.53038 * 109.38182 * 185.69993 * 5 3 2 7 7 C 1.53044 * 109.53621 * 61.24326 * 6 5 3 8 8 C 1.53201 * 109.31148 * 298.63196 * 7 6 5 9 9 N 1.46923 * 109.58883 * 178.95902 * 3 2 1 10 10 C 1.34774 * 120.63262 * 353.41780 * 9 3 2 11 11 O 1.21351 * 119.99698 * 4.85242 * 10 9 3 12 12 C 1.49444 * 120.00018 * 184.84891 * 10 9 3 13 13 O 1.21346 * 120.00010 * 274.75075 * 12 10 9 14 14 N 1.34778 * 120.00085 * 94.74993 * 12 10 9 15 15 C 1.47082 * 120.88109 * 175.04271 * 14 12 10 16 16 C 1.53235 * 108.51861 * 231.20887 * 15 14 12 17 17 N 1.46900 * 109.34327 * 306.16860 * 16 15 14 18 18 C 1.46892 * 111.00501 * 187.25651 * 17 16 15 19 19 C 1.50694 * 109.47619 * 169.99991 * 18 17 16 20 20 H 1.08010 * 119.99948 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00456 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99964 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47142 * 89.99991 * 23 21 19 25 25 H 1.48499 * 109.46858 * 209.99648 * 23 21 19 26 26 H 1.48499 * 109.47327 * 329.99711 * 23 21 19 27 27 C 1.46898 * 111.26505 * 63.10519 * 17 16 15 28 28 C 1.47076 * 120.87778 * 355.06705 * 14 12 10 29 29 H 1.09007 * 109.46812 * 65.28192 * 1 2 3 30 30 H 1.08995 * 109.47537 * 185.28008 * 1 2 3 31 31 H 1.08995 * 109.46576 * 305.28741 * 1 2 3 32 32 H 1.09007 * 109.47015 * 239.99864 * 2 1 3 33 33 H 1.09005 * 109.46988 * 120.00136 * 2 1 3 34 34 H 1.09005 * 109.56344 * 65.66830 * 5 3 2 35 35 H 1.08991 * 109.38712 * 305.63180 * 5 3 2 36 36 H 1.09000 * 109.46164 * 301.22523 * 6 5 3 37 37 H 1.08998 * 109.45027 * 181.25510 * 6 5 3 38 38 H 1.09004 * 109.49544 * 178.68521 * 7 6 5 39 39 H 1.08995 * 109.49991 * 58.58285 * 7 6 5 40 40 H 1.09001 * 109.58425 * 294.85091 * 8 7 6 41 41 H 1.08999 * 109.58580 * 174.42104 * 8 7 6 42 42 H 1.08996 * 109.62580 * 111.49632 * 15 14 12 43 43 H 1.09004 * 109.78806 * 351.01056 * 15 14 12 44 44 H 1.09003 * 109.49574 * 186.21051 * 16 15 14 45 45 H 1.08999 * 109.49607 * 66.13282 * 16 15 14 46 46 H 1.08999 * 109.47360 * 289.99970 * 18 17 16 47 47 H 1.09001 * 109.47098 * 50.00123 * 18 17 16 48 48 H 0.97003 * 119.99839 * 179.97438 * 22 21 19 49 49 H 1.08996 * 109.49187 * 56.86060 * 27 17 16 50 50 H 1.09007 * 109.48923 * 176.93919 * 27 17 16 51 51 H 1.08998 * 109.63047 * 248.49789 * 28 14 12 52 52 H 1.09000 * 109.63438 * 8.88966 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6586 1.9671 0.8759 5 6 1.5628 2.1524 -1.2656 6 6 2.1900 3.5466 -1.3332 7 6 3.7140 3.4198 -1.3941 8 6 4.2157 2.7249 -0.1243 9 7 3.5092 1.4453 0.0251 10 6 4.1957 0.2955 0.1768 11 8 3.6053 -0.7643 0.2058 12 6 5.6840 0.3257 0.3092 13 8 6.3812 0.3438 -0.6838 14 7 6.2518 0.3329 1.5315 15 6 7.7123 0.2533 1.6859 16 6 8.0364 -0.8679 2.6788 17 7 7.2914 -0.6446 3.9250 18 6 7.7035 -1.5988 4.9630 19 6 7.1076 -1.1909 6.2856 20 1 6.4852 -0.3104 6.3490 21 6 7.3577 -1.9409 7.4152 22 7 8.1158 -3.0127 7.3383 23 14 6.6184 -1.4355 9.0546 24 1 5.2923 -2.0830 9.2203 25 1 7.5185 -1.8619 10.1560 26 1 6.4566 0.0402 9.0907 27 6 5.8415 -0.7078 3.6975 28 6 5.4273 0.4200 2.7463 29 1 -0.3633 0.4298 -0.9336 30 1 -0.3634 -1.0232 0.0946 31 1 -0.3632 0.5937 0.8388 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.4766 2.2427 -1.2459 35 1 1.8639 1.5751 -2.1397 36 1 1.9081 4.1150 -0.4469 37 1 1.8327 4.0626 -2.2243 38 1 4.1591 4.4123 -1.4658 39 1 3.9954 2.8304 -2.2667 40 1 4.0152 3.3563 0.7413 41 1 5.2873 2.5432 -0.2063 42 1 8.0923 1.2012 2.0670 43 1 8.1738 0.0344 0.7229 44 1 9.1058 -0.8692 2.8897 45 1 7.7488 -1.8279 2.2501 46 1 7.3531 -2.5967 4.6991 47 1 8.7907 -1.6042 5.0406 48 1 8.2921 -3.5402 8.1330 49 1 5.5844 -1.6700 3.2547 50 1 5.3190 -0.5929 4.6473 51 1 5.5877 1.3838 3.2294 52 1 4.3750 0.3130 2.4832 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601416744.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:32 Heat of formation + Delta-G solvation = -70.911705 kcal Electronic energy + Delta-G solvation = -31199.104087 eV Core-core repulsion = 27198.097007 eV Total energy + Delta-G solvation = -4001.007080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.39977 -40.70042 -39.12447 -38.53279 -36.13567 -35.20418 -34.44215 -33.97179 -32.34657 -30.41283 -30.21843 -28.07793 -26.82153 -25.27375 -24.94981 -24.62324 -23.47563 -22.35824 -22.00605 -21.07734 -19.73965 -18.87786 -18.51041 -17.85885 -17.71049 -16.78213 -16.53368 -16.30303 -16.08654 -15.97080 -15.54782 -15.52389 -15.44450 -15.40072 -15.06468 -14.61676 -14.47999 -14.19902 -14.14307 -14.06776 -13.64325 -13.60781 -13.33783 -13.10186 -12.82315 -12.67370 -12.65102 -12.48241 -12.38102 -12.27313 -12.15538 -12.06558 -11.86512 -11.79837 -11.76198 -11.50945 -11.42504 -11.30625 -10.62496 -10.22024 -10.03193 -9.74807 -9.15343 -8.20438 -6.30943 0.89876 0.96426 1.34915 1.43948 1.44973 1.56521 2.14446 2.41209 2.96821 3.09953 3.16762 3.67251 3.77726 3.78545 3.89261 3.92476 4.00768 4.11084 4.15353 4.20289 4.24427 4.31770 4.37713 4.41881 4.48976 4.57210 4.62176 4.65761 4.75744 4.80194 4.86002 4.86464 4.90410 4.92720 5.01589 5.08801 5.11254 5.16842 5.20109 5.26389 5.26951 5.30841 5.31937 5.45987 5.62084 5.62751 5.92965 5.99431 6.00935 6.20369 6.50212 6.56948 6.67488 6.84497 7.39143 8.91122 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.002908 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.476247 B = 9625.434854 C =10475.030123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C 0.142 3.858 4 H 0.101 0.899 5 C -0.129 4.129 6 C -0.116 4.116 7 C -0.131 4.131 8 C 0.097 3.903 9 N -0.584 5.584 10 C 0.516 3.484 11 O -0.535 6.535 12 C 0.512 3.488 13 O -0.552 6.552 14 N -0.588 5.588 15 C 0.126 3.874 16 C 0.039 3.961 17 N -0.532 5.532 18 C 0.208 3.792 19 C -0.521 4.521 20 H 0.072 0.928 21 C 0.000 4.000 22 N -0.937 5.937 23 Si 0.971 3.029 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.258 1.258 27 C 0.052 3.948 28 C 0.124 3.876 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.050 0.950 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.010 0.990 46 H -0.044 1.044 47 H 0.010 0.990 48 H 0.264 0.736 49 H 0.006 0.994 50 H 0.091 0.909 51 H 0.108 0.892 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.294 17.478 -16.338 27.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C 0.041 3.959 4 H 0.119 0.881 5 C -0.167 4.167 6 C -0.153 4.153 7 C -0.169 4.169 8 C -0.024 4.024 9 N -0.318 5.318 10 C 0.298 3.702 11 O -0.412 6.412 12 C 0.296 3.704 13 O -0.430 6.430 14 N -0.322 5.322 15 C 0.004 3.996 16 C -0.090 4.090 17 N -0.256 5.256 18 C 0.082 3.918 19 C -0.560 4.560 20 H 0.090 0.910 21 C -0.198 4.198 22 N -0.578 5.578 23 Si 0.795 3.205 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.182 1.182 27 C -0.077 4.077 28 C 0.002 3.998 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.069 0.931 40 H 0.122 0.878 41 H 0.088 0.912 42 H 0.121 0.879 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.029 0.971 46 H -0.027 1.027 47 H 0.028 0.972 48 H 0.073 0.927 49 H 0.024 0.976 50 H 0.110 0.890 51 H 0.126 0.874 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.050 17.279 -16.580 27.765 hybrid contribution 0.177 -1.813 0.549 1.903 sum -13.873 15.466 -16.031 26.242 Atomic orbital electron populations 1.21899 0.94284 1.02006 1.02746 1.21944 0.95988 0.94619 1.02564 1.21642 0.76439 0.97541 1.00326 0.88076 1.21979 1.02152 0.96529 0.96068 1.21544 0.93790 0.96112 1.03884 1.21906 0.97446 1.01527 0.96043 1.22104 0.96210 0.83353 1.00757 1.48330 1.07826 1.06334 1.69323 1.20191 0.87203 0.85213 0.77566 1.90880 1.67496 1.31640 1.51178 1.20608 0.89367 0.76724 0.83731 1.90752 1.63445 1.51382 1.37420 1.48357 1.08702 1.69655 1.05436 1.21843 0.78336 0.99952 0.99441 1.22506 0.99943 0.96182 0.90390 1.62055 1.04295 1.52399 1.06882 1.19389 0.94972 0.87626 0.89837 1.21458 1.30642 1.10970 0.92883 0.90986 1.25956 0.95661 0.94805 1.03401 1.70099 1.39271 1.17689 1.30716 0.85352 0.77943 0.79187 0.77972 1.20036 1.21156 1.18205 1.22308 0.89870 0.95900 0.99640 1.21991 0.94015 1.00471 0.83323 0.91398 0.93168 0.91372 0.93605 0.92081 0.88222 0.93125 0.89837 0.90117 0.88190 0.93106 0.87784 0.91180 0.87882 0.88613 0.88963 0.97134 1.02679 0.97207 0.92750 0.97602 0.89047 0.87363 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.45 71.98 0.68 -1.60 16 2 C -0.11 -2.42 3.85 30.59 0.12 -2.30 16 3 C 0.14 2.32 2.98 44.83 0.13 2.45 16 4 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 5 C -0.13 -1.54 4.87 30.53 0.15 -1.39 16 6 C -0.12 -0.98 5.89 30.62 0.18 -0.80 16 7 C -0.13 -1.50 6.08 30.68 0.19 -1.32 16 8 C 0.10 1.46 6.33 86.37 0.55 2.01 16 9 N -0.58 -11.95 2.98 -797.37 -2.37 -14.32 16 10 C 0.52 14.92 5.43 87.27 0.47 15.39 16 11 O -0.53 -18.50 12.50 -3.25 -0.04 -18.54 16 12 C 0.51 16.02 5.62 87.27 0.49 16.51 16 13 O -0.55 -19.78 16.37 -3.23 -0.05 -19.83 16 14 N -0.59 -17.36 3.01 -819.53 -2.47 -19.82 16 15 C 0.13 3.64 6.58 86.35 0.57 4.21 16 16 C 0.04 1.39 5.62 86.38 0.49 1.87 16 17 N -0.53 -22.05 4.62 -899.85 -4.16 -26.21 16 18 C 0.21 10.89 4.72 85.56 0.40 11.29 16 19 C -0.52 -28.44 8.41 25.60 0.22 -28.22 16 20 H 0.07 3.74 7.13 -2.91 -0.02 3.71 16 21 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 22 N -0.94 -56.07 13.29 21.45 0.28 -55.79 16 23 Si 0.97 42.98 29.54 68.60 2.03 45.01 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 25 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 27 C 0.05 1.94 5.46 86.38 0.47 2.41 16 28 C 0.12 3.48 6.53 86.35 0.56 4.04 16 29 H 0.07 0.81 6.89 -2.38 -0.02 0.79 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 1.22 7.12 -2.38 -0.02 1.20 16 33 H 0.06 1.65 6.35 -2.38 -0.02 1.63 16 34 H 0.10 0.81 6.90 -2.38 -0.02 0.80 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.31 6.22 -2.39 -0.01 1.30 16 42 H 0.10 2.56 8.14 -2.39 -0.02 2.55 16 43 H 0.10 2.72 7.11 -2.38 -0.02 2.71 16 44 H 0.09 3.14 7.99 -2.39 -0.02 3.12 16 45 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 46 H -0.04 -2.61 8.12 -2.39 -0.02 -2.63 16 47 H 0.01 0.55 7.97 -2.39 -0.02 0.53 16 48 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 49 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 50 H 0.09 3.57 6.67 -2.38 -0.02 3.55 16 51 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 52 H 0.09 2.29 6.37 -2.39 -0.02 2.27 16 Total: -1.00 -71.77 395.87 0.24 -71.53 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.89 Total: 12.98 kcal Atomic # 6 Polarization: 18.87 SS G_CDS: 6.13 Total: 24.99 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -8.71 Total: -116.14 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -0.09 Total: -38.37 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -71.77 0.24 -71.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601416744.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.621 kcal (2) G-P(sol) polarization free energy of solvation -71.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds