Wall clock time and date at job start Tue Mar 31 2020 20:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47000 * 2 1 4 4 H 1.09003 * 110.00120 * 306.81351 * 3 2 1 5 5 C 1.54327 * 109.88161 * 67.91275 * 3 2 1 6 6 C 1.55156 * 102.94252 * 141.60961 * 5 3 2 7 7 H 1.08999 * 111.00390 * 206.41909 * 6 5 3 8 8 C 1.53001 * 111.00554 * 82.61134 * 6 5 3 9 9 C 1.55127 * 101.48770 * 324.33366 * 6 5 3 10 10 N 1.47026 * 109.88625 * 185.71901 * 3 2 1 11 11 C 1.34772 * 125.64509 * 61.60278 * 10 3 2 12 12 O 1.21350 * 120.00389 * 5.34581 * 11 10 3 13 13 C 1.49454 * 120.00100 * 185.34490 * 11 10 3 14 14 O 1.21348 * 119.99576 * 353.70005 * 13 11 10 15 15 N 1.34771 * 120.00137 * 173.70580 * 13 11 10 16 16 C 1.47077 * 120.88513 * 353.67477 * 15 13 11 17 17 C 1.53240 * 108.52062 * 128.79483 * 16 15 13 18 18 N 1.46892 * 109.36189 * 53.82068 * 17 16 15 19 19 C 1.46906 * 111.00260 * 172.75617 * 18 17 16 20 20 C 1.50695 * 109.46784 * 73.96454 * 19 18 17 21 21 H 1.08005 * 120.00271 * 4.80021 * 20 19 18 22 22 C 1.37875 * 120.00034 * 184.80162 * 20 19 18 23 23 N 1.31515 * 120.00226 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 120.00000 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47315 * 89.99531 * 24 22 20 26 26 H 1.48495 * 109.46894 * 209.99993 * 24 22 20 27 27 H 1.48507 * 109.46751 * 329.99974 * 24 22 20 28 28 C 1.46891 * 111.27493 * 296.93586 * 18 17 16 29 29 C 1.47081 * 120.88120 * 173.65685 * 15 13 11 30 30 H 1.09004 * 109.47142 * 304.96142 * 1 2 3 31 31 H 1.08993 * 109.47787 * 64.96969 * 1 2 3 32 32 H 1.09009 * 109.46823 * 184.96691 * 1 2 3 33 33 H 1.09000 * 109.46830 * 240.00520 * 2 1 3 34 34 H 1.09000 * 109.47715 * 120.00443 * 2 1 3 35 35 H 1.09004 * 110.71547 * 259.97454 * 5 3 2 36 36 H 1.09000 * 110.71995 * 23.06478 * 5 3 2 37 37 H 1.08997 * 109.47122 * 59.99454 * 8 6 5 38 38 H 1.08999 * 109.47381 * 179.97438 * 8 6 5 39 39 H 1.09003 * 109.46752 * 300.00286 * 8 6 5 40 40 H 1.08999 * 110.49589 * 278.45464 * 9 6 5 41 41 H 1.08994 * 110.34481 * 156.06019 * 9 6 5 42 42 H 1.09001 * 109.62523 * 9.08882 * 16 15 13 43 43 H 1.08995 * 109.79222 * 248.60465 * 16 15 13 44 44 H 1.09003 * 109.48967 * 173.79019 * 17 16 15 45 45 H 1.08991 * 109.49582 * 293.84529 * 17 16 15 46 46 H 1.08997 * 109.46920 * 193.96497 * 19 18 17 47 47 H 1.09001 * 109.46996 * 313.96304 * 19 18 17 48 48 H 0.97001 * 120.00000 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.47075 * 303.10513 * 28 18 17 50 50 H 1.08996 * 109.52090 * 183.04967 * 28 18 17 51 51 H 1.09006 * 109.62728 * 350.91576 * 29 15 13 52 52 H 1.09008 * 109.63066 * 111.29815 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5855 1.9986 -0.8200 5 6 1.7004 2.1192 1.3448 6 6 2.9587 2.9819 1.6272 7 1 3.0879 3.1457 2.6970 8 6 2.8910 4.3129 0.8758 9 6 4.0863 2.0766 1.0656 10 7 3.5037 1.4555 -0.1378 11 6 4.1980 0.9738 -1.1877 12 8 3.6105 0.5651 -2.1677 13 6 5.6916 0.9431 -1.1450 14 8 6.2827 1.4549 -0.2170 15 7 6.3820 0.3471 -2.1373 16 6 5.6876 -0.3978 -3.1984 17 6 6.1872 0.1087 -4.5556 18 7 7.6532 0.0265 -4.5965 19 6 8.1610 0.3401 -5.9389 20 6 8.0506 1.8229 -6.1838 21 1 7.7170 2.4777 -5.3923 22 6 8.3755 2.3437 -7.4184 23 7 8.2787 3.6377 -7.6324 24 14 8.9517 1.2112 -8.7877 25 1 7.7792 0.7436 -9.5698 26 1 9.8810 1.9481 -9.6813 27 1 9.6532 0.0414 -8.2002 28 6 8.2644 0.8988 -3.5849 29 6 7.8499 0.4247 -2.1879 30 1 -0.3634 0.5889 0.8422 31 1 -0.3634 0.4348 -0.9310 32 1 -0.3633 -1.0239 0.0890 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.8154 2.7481 1.2473 36 1 1.5573 1.3733 2.1266 37 1 2.0085 4.8666 1.1963 38 1 3.7849 4.8980 1.0919 39 1 2.8311 4.1226 -0.1958 40 1 4.3596 1.3120 1.7927 41 1 4.9565 2.6764 0.7993 42 1 4.6131 -0.2324 -3.1188 43 1 5.9022 -1.4622 -3.1032 44 1 5.7661 -0.5064 -5.3509 45 1 5.8771 1.1444 -4.6940 46 1 9.2052 0.0363 -6.0125 47 1 7.5733 -0.1961 -6.6840 48 1 8.5076 4.0042 -8.5008 49 1 7.9257 1.9237 -3.7365 50 1 9.3498 0.8572 -3.6760 51 1 8.2051 1.1338 -1.4402 52 1 8.2756 -0.5592 -1.9907 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601461286.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:06 Heat of formation + Delta-G solvation = -60.761059 kcal Electronic energy + Delta-G solvation = -31077.979978 eV Core-core repulsion = 27077.413063 eV Total energy + Delta-G solvation = -4000.566915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.26738 -40.66262 -39.12378 -39.04346 -36.14061 -34.73860 -34.39287 -33.62632 -32.19147 -30.57074 -29.34262 -27.94647 -27.54478 -26.18978 -24.89300 -24.18219 -23.47399 -22.47548 -21.44034 -20.76987 -20.20489 -18.94273 -18.34240 -18.14506 -17.35714 -17.15946 -16.52924 -16.46505 -16.13914 -15.97213 -15.76723 -15.56987 -15.21098 -14.89727 -14.78485 -14.50316 -14.48241 -14.46293 -13.99011 -13.92222 -13.76076 -13.34714 -13.17578 -13.04813 -12.98702 -12.81248 -12.66268 -12.44008 -12.36567 -12.31574 -12.09814 -12.04143 -11.93940 -11.88577 -11.62894 -11.62401 -11.49538 -11.34533 -10.82425 -10.18127 -9.96504 -9.80548 -9.08816 -8.34483 -6.41341 0.23010 1.13465 1.34778 1.36040 1.48639 2.01163 2.24927 2.31779 2.99972 3.00682 3.21776 3.46449 3.59533 3.84810 3.93275 4.03625 4.05424 4.18368 4.22496 4.24527 4.29967 4.40616 4.46599 4.52271 4.55751 4.61953 4.68145 4.74799 4.76449 4.85672 4.89382 4.91126 4.92209 5.01020 5.05825 5.08180 5.10939 5.12269 5.15005 5.16529 5.20250 5.27593 5.32913 5.42435 5.44512 5.47852 5.90517 6.04517 6.18097 6.22923 6.31961 6.53371 6.65774 6.82819 7.26132 8.81861 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016898 B = 0.002762 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.648383 B =10135.629489 C =10266.467406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.128 3.872 4 H 0.068 0.932 5 C -0.112 4.112 6 C -0.099 4.099 7 H 0.121 0.879 8 C -0.145 4.145 9 C 0.095 3.905 10 N -0.579 5.579 11 C 0.520 3.480 12 O -0.527 6.527 13 C 0.502 3.498 14 O -0.539 6.539 15 N -0.578 5.578 16 C 0.067 3.933 17 C 0.053 3.947 18 N -0.526 5.526 19 C 0.161 3.839 20 C -0.557 4.557 21 H 0.031 0.969 22 C 0.009 3.991 23 N -0.949 5.949 24 Si 0.954 3.046 25 H -0.267 1.267 26 H -0.285 1.285 27 H -0.241 1.241 28 C 0.055 3.945 29 C 0.122 3.878 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.030 0.970 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.153 0.847 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.002 0.998 46 H 0.037 0.963 47 H 0.033 0.967 48 H 0.266 0.734 49 H 0.008 0.992 50 H 0.087 0.913 51 H 0.092 0.908 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.813 -7.428 22.048 27.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.026 3.974 4 H 0.086 0.914 5 C -0.149 4.149 6 C -0.118 4.118 7 H 0.139 0.861 8 C -0.202 4.202 9 C -0.026 4.026 10 N -0.311 5.311 11 C 0.304 3.696 12 O -0.406 6.406 13 C 0.285 3.715 14 O -0.418 6.418 15 N -0.310 5.310 16 C -0.054 4.054 17 C -0.076 4.076 18 N -0.249 5.249 19 C 0.034 3.966 20 C -0.595 4.595 21 H 0.049 0.951 22 C -0.188 4.188 23 N -0.589 5.589 24 Si 0.776 3.224 25 H -0.192 1.192 26 H -0.211 1.211 27 H -0.164 1.164 28 C -0.074 4.074 29 C 0.000 4.000 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.169 0.831 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.021 0.979 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.075 0.925 49 H 0.027 0.973 50 H 0.105 0.895 51 H 0.110 0.890 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.603 -7.757 21.961 27.490 hybrid contribution 0.530 1.168 -1.672 2.107 sum -14.073 -6.589 20.289 25.556 Atomic orbital electron populations 1.21683 0.93109 1.02706 1.02509 1.21850 0.97891 0.95085 1.02134 1.22030 0.77644 0.97677 1.00058 0.91405 1.22860 0.98447 0.99271 0.94354 1.22481 0.93517 0.93958 1.01855 0.86124 1.21767 1.02834 0.96444 0.99159 1.22904 0.97589 0.96724 0.85425 1.48503 1.08554 1.56187 1.17868 1.19793 0.87825 0.79207 0.82818 1.90312 1.70448 1.48519 1.31355 1.20151 0.88668 0.79725 0.82961 1.90665 1.70940 1.46335 1.33817 1.48162 1.08011 1.49997 1.24858 1.23338 1.02365 0.95914 0.83775 1.22282 0.88763 0.98545 0.98028 1.62492 1.05644 1.51274 1.05481 1.20078 0.96285 0.92757 0.87500 1.21954 1.45392 0.94009 0.98173 0.95090 1.25993 0.94765 0.96524 1.01567 1.70094 1.50213 1.14038 1.24580 0.85614 0.78958 0.79444 0.78336 1.19202 1.21056 1.16437 1.22242 1.00046 0.94069 0.91072 1.21921 0.78098 1.03518 0.96413 0.90482 0.93194 0.91849 0.93402 0.90927 0.87837 0.88162 0.90208 0.92581 0.95029 0.89874 0.90364 0.83103 0.89345 0.89324 0.97909 0.94505 0.94861 0.92482 0.97325 0.89487 0.88952 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.83 71.98 0.71 -1.00 16 2 C -0.13 -2.19 5.41 30.59 0.17 -2.02 16 3 C 0.13 2.27 2.54 45.34 0.12 2.39 16 4 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 5 C -0.11 -1.12 5.06 31.78 0.16 -0.96 16 6 C -0.10 -1.21 3.71 -9.33 -0.03 -1.25 16 7 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 8 C -0.14 -2.12 9.22 71.98 0.66 -1.46 16 9 C 0.10 1.85 5.47 86.93 0.48 2.32 16 10 N -0.58 -13.67 3.05 -789.19 -2.41 -16.07 16 11 C 0.52 15.84 7.52 87.27 0.66 16.50 16 12 O -0.53 -17.63 12.29 -3.25 -0.04 -17.67 16 13 C 0.50 16.67 7.72 87.27 0.67 17.34 16 14 O -0.54 -18.46 13.34 -3.24 -0.04 -18.50 16 15 N -0.58 -19.51 3.01 -819.50 -2.47 -21.98 16 16 C 0.07 2.20 6.46 86.35 0.56 2.75 16 17 C 0.05 2.10 5.36 86.39 0.46 2.57 16 18 N -0.53 -21.89 4.83 -899.86 -4.35 -26.24 16 19 C 0.16 7.67 4.27 85.55 0.37 8.03 16 20 C -0.56 -32.18 8.48 25.60 0.22 -31.96 16 21 H 0.03 2.03 6.11 -2.91 -0.02 2.01 16 22 C 0.01 0.55 5.47 84.65 0.46 1.02 16 23 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 24 Si 0.95 44.07 27.38 68.60 1.88 45.94 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 26 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.24 -10.21 6.68 99.48 0.66 -9.55 16 28 C 0.05 2.21 4.98 86.39 0.43 2.64 16 29 C 0.12 4.00 6.58 86.35 0.57 4.57 16 30 H 0.08 0.61 7.37 -2.38 -0.02 0.59 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.05 1.09 6.88 -2.39 -0.02 1.07 16 34 H 0.07 1.08 8.00 -2.39 -0.02 1.06 16 35 H 0.10 0.72 8.05 -2.38 -0.02 0.70 16 36 H 0.10 0.68 7.75 -2.39 -0.02 0.66 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.03 0.62 7.91 -2.39 -0.02 0.60 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.08 1.92 6.23 -2.39 -0.01 1.91 16 42 H 0.15 5.07 3.80 -77.34 -0.29 4.77 16 43 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.09 3.28 7.95 -2.39 -0.02 3.26 16 45 H 0.00 0.12 7.73 -2.39 -0.02 0.10 16 46 H 0.04 1.72 7.53 -2.39 -0.02 1.70 16 47 H 0.03 1.54 7.05 -2.39 -0.02 1.52 16 48 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 49 H 0.01 0.42 6.22 -2.39 -0.01 0.40 16 50 H 0.09 3.37 8.11 -2.39 -0.02 3.35 16 51 H 0.09 2.97 7.11 -2.38 -0.02 2.95 16 52 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 Total: -1.00 -72.47 392.24 0.10 -72.37 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.57 Total: 20.60 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: 6.65 Total: 21.48 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -8.92 Total: -124.23 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -0.08 Total: -36.17 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.94 kcal Total: -72.47 0.10 -72.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601461286.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.614 kcal (2) G-P(sol) polarization free energy of solvation -72.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds