Wall clock time and date at job start Tue Mar 31 2020 20:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47341 * 2 1 4 4 H 1.08992 * 109.87456 * 301.73412 * 3 2 1 5 5 C 1.54333 * 109.87848 * 62.90895 * 3 2 1 6 6 C 1.55155 * 102.94042 * 141.61183 * 5 3 2 7 7 H 1.08999 * 111.00717 * 82.57407 * 6 5 3 8 8 C 1.53005 * 111.00306 * 206.42501 * 6 5 3 9 9 C 1.54916 * 101.58433 * 324.49486 * 6 5 3 10 10 N 1.47021 * 109.88475 * 180.71600 * 3 2 1 11 11 C 1.34772 * 125.64791 * 61.60958 * 10 3 2 12 12 O 1.21348 * 119.99914 * 355.30877 * 11 10 3 13 13 C 1.49454 * 120.00193 * 175.31166 * 11 10 3 14 14 O 1.21349 * 119.99709 * 6.72116 * 13 11 10 15 15 N 1.34774 * 120.00251 * 186.71687 * 13 11 10 16 16 C 1.47083 * 120.88054 * 6.65321 * 15 13 11 17 17 C 1.53690 * 108.27929 * 128.75083 * 16 15 13 18 18 N 1.46896 * 109.25790 * 54.07861 * 17 16 15 19 19 C 1.46893 * 111.00241 * 172.60642 * 18 17 16 20 20 C 1.50702 * 109.47477 * 294.30416 * 19 18 17 21 21 H 1.08002 * 119.99677 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00280 * 179.97438 * 20 19 18 23 23 N 1.31506 * 120.00156 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99807 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47301 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47027 * 120.00268 * 24 22 20 27 27 H 1.48504 * 109.46858 * 239.99792 * 24 22 20 28 28 C 1.46898 * 111.27133 * 296.75866 * 18 17 16 29 29 C 1.47074 * 120.88312 * 186.92208 * 15 13 11 30 30 H 1.09003 * 109.47206 * 184.96371 * 1 2 3 31 31 H 1.08995 * 109.47165 * 304.96712 * 1 2 3 32 32 H 1.08995 * 109.47123 * 64.96484 * 1 2 3 33 33 H 1.09011 * 109.47118 * 240.00055 * 2 1 3 34 34 H 1.09006 * 109.47432 * 120.00352 * 2 1 3 35 35 H 1.08998 * 110.71826 * 23.24409 * 5 3 2 36 36 H 1.08998 * 110.71758 * 259.97678 * 5 3 2 37 37 H 1.08997 * 109.46970 * 173.65096 * 8 6 5 38 38 H 1.08997 * 109.46668 * 293.64884 * 8 6 5 39 39 H 1.08994 * 109.46844 * 53.64649 * 8 6 5 40 40 H 1.08996 * 110.36962 * 155.84417 * 9 6 5 41 41 H 1.08998 * 110.36568 * 278.06662 * 9 6 5 42 42 H 1.09003 * 109.62739 * 248.52205 * 16 15 13 43 43 H 1.08999 * 109.62696 * 9.09534 * 16 15 13 44 44 H 1.09000 * 109.64577 * 294.07506 * 17 16 15 45 45 H 1.09002 * 109.41894 * 173.94908 * 17 16 15 46 46 H 1.08992 * 109.47278 * 54.30321 * 19 18 17 47 47 H 1.09002 * 109.47347 * 174.30899 * 19 18 17 48 48 H 0.97001 * 120.00254 * 179.97438 * 23 22 20 49 49 H 1.08989 * 109.49278 * 303.14310 * 28 18 17 50 50 H 1.09006 * 109.49322 * 183.06044 * 28 18 17 51 51 H 1.09002 * 109.63029 * 350.90221 * 29 15 13 52 52 H 1.09001 * 109.62910 * 111.28558 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6553 1.9715 -0.8718 5 6 1.5918 2.1576 1.2921 6 6 2.8237 3.0295 1.6519 7 1 2.8212 3.9615 1.0866 8 6 2.8814 3.3032 3.1561 9 6 3.9926 2.1145 1.2088 10 7 3.5101 1.4531 -0.0173 11 6 4.2879 0.9420 -0.9921 12 8 3.7837 0.3420 -1.9186 13 6 5.7713 1.1142 -0.9320 14 8 6.2857 1.6052 0.0512 15 7 6.5376 0.7240 -1.9698 16 6 5.9284 0.2620 -3.2263 17 6 6.5674 1.0411 -4.3868 18 7 8.0281 0.9020 -4.3174 19 6 8.6693 1.4834 -5.5044 20 6 8.2835 0.6873 -6.7244 21 1 7.6279 -0.1655 -6.6277 22 6 8.7675 1.0477 -7.9641 23 7 9.5661 2.0858 -8.0819 24 14 8.2886 0.0613 -9.4765 25 1 7.3877 -1.0498 -9.0780 26 1 7.5881 0.9451 -10.4426 27 1 9.5102 -0.4959 -10.1112 28 6 8.5623 1.4979 -3.0856 29 6 8.0050 0.7433 -1.8738 30 1 -0.3634 -1.0238 0.0889 31 1 -0.3633 0.5889 0.8421 32 1 -0.3633 0.4349 -0.9311 33 1 1.8934 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8900 35 1 1.3871 1.4346 2.0818 36 1 0.7187 2.7824 1.1040 37 1 3.8112 3.8189 3.3962 38 1 2.0352 3.9266 3.4447 39 1 2.8390 2.3591 3.6990 40 1 4.8802 2.7098 0.9945 41 1 4.2094 1.3756 1.9803 42 1 6.1128 -0.8049 -3.3520 43 1 4.8551 0.4507 -3.2039 44 1 6.2984 2.0948 -4.3129 45 1 6.2083 0.6392 -5.3343 46 1 8.3413 2.5157 -5.6255 47 1 9.7521 1.4581 -5.3816 48 1 9.9069 2.3392 -8.9540 49 1 8.2656 2.5451 -3.0298 50 1 9.6500 1.4272 -3.0893 51 1 8.3054 1.2503 -0.9569 52 1 8.3851 -0.2783 -1.8686 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601461287.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:10 Heat of formation + Delta-G solvation = -47.323255 kcal Electronic energy + Delta-G solvation = -30599.869945 eV Core-core repulsion = 26599.885736 eV Total energy + Delta-G solvation = -3999.984208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.13933 -39.53680 -37.94854 -37.56209 -34.49171 -34.13735 -32.99251 -32.37805 -30.76987 -28.89473 -28.39316 -26.81061 -26.12289 -24.88532 -23.57281 -23.04414 -21.86774 -21.11045 -20.79658 -19.91832 -18.91576 -17.39464 -17.03294 -16.55830 -16.34089 -15.83860 -15.31837 -15.11215 -14.75663 -14.55060 -14.33096 -14.32031 -14.04094 -13.80763 -13.71686 -13.52016 -13.49024 -13.03977 -12.91981 -12.75383 -12.51520 -12.30842 -12.04141 -11.93330 -11.83091 -11.51716 -11.44603 -11.27878 -11.09570 -11.04324 -11.02311 -10.78610 -10.72535 -10.68206 -10.49233 -10.46649 -9.88605 -9.26502 -9.05627 -8.92509 -8.55038 -8.44427 -7.30953 -6.04921 -4.06546 1.42161 2.19173 3.17816 3.30400 3.34824 3.37987 3.42990 4.03039 4.12086 4.36456 4.39729 4.40980 4.70545 4.84839 4.87684 4.91816 5.02178 5.12917 5.14359 5.29126 5.30534 5.32770 5.35816 5.40837 5.44049 5.51891 5.58857 5.61803 5.67348 5.69845 5.73289 5.77210 5.82356 5.86074 5.90657 5.95615 5.97609 6.12560 6.19641 6.26544 6.46800 6.54402 6.63669 7.03824 7.23434 7.29290 7.35412 7.65014 7.76572 8.00694 8.03084 8.13808 8.49445 9.01204 9.58054 11.06009 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.002539 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.176142 B =11025.992344 C =12008.274889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C 0.136 3.864 4 H 0.080 0.920 5 C -0.123 4.123 6 C -0.111 4.111 7 H 0.085 0.915 8 C -0.140 4.140 9 C 0.101 3.899 10 N -0.589 5.589 11 C 0.524 3.476 12 O -0.507 6.507 13 C 0.506 3.494 14 O -0.533 6.533 15 N -0.571 5.571 16 C 0.074 3.926 17 C 0.051 3.949 18 N -0.537 5.537 19 C 0.193 3.807 20 C -0.508 4.508 21 H 0.065 0.935 22 C 0.055 3.945 23 N -0.898 5.898 24 Si 0.898 3.102 25 H -0.271 1.271 26 H -0.285 1.285 27 H -0.284 1.284 28 C 0.042 3.958 29 C 0.115 3.885 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.133 0.867 44 H 0.022 0.978 45 H 0.098 0.902 46 H -0.009 1.009 47 H 0.032 0.968 48 H 0.261 0.739 49 H 0.027 0.973 50 H 0.083 0.917 51 H 0.090 0.910 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.401 0.450 22.367 27.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C 0.033 3.967 4 H 0.098 0.902 5 C -0.161 4.161 6 C -0.130 4.130 7 H 0.104 0.896 8 C -0.197 4.197 9 C -0.021 4.021 10 N -0.323 5.323 11 C 0.308 3.692 12 O -0.384 6.384 13 C 0.288 3.712 14 O -0.411 6.411 15 N -0.303 5.303 16 C -0.047 4.047 17 C -0.078 4.078 18 N -0.262 5.262 19 C 0.068 3.932 20 C -0.546 4.546 21 H 0.083 0.917 22 C -0.146 4.146 23 N -0.538 5.538 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.211 1.211 27 H -0.210 1.210 28 C -0.087 4.087 29 C -0.007 4.007 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.150 0.850 44 H 0.041 0.959 45 H 0.116 0.884 46 H 0.009 0.991 47 H 0.050 0.950 48 H 0.071 0.929 49 H 0.045 0.955 50 H 0.102 0.898 51 H 0.108 0.892 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.109 -0.050 22.173 27.407 hybrid contribution -0.168 0.406 -1.053 1.142 sum -16.277 0.357 21.120 26.667 Atomic orbital electron populations 1.21726 0.94962 1.01955 1.01929 1.21923 0.96271 0.95867 1.03497 1.21777 0.78897 0.97050 0.98978 0.90152 1.22841 0.98083 0.98754 0.96403 1.22450 0.94517 0.98531 0.97500 0.89633 1.21675 1.02306 1.01973 0.93767 1.22749 0.98064 0.95771 0.85565 1.48357 1.06764 1.56529 1.20641 1.19975 0.87789 0.79679 0.81757 1.90523 1.74889 1.40570 1.32405 1.19874 0.87432 0.80026 0.83861 1.90663 1.74371 1.43733 1.32349 1.48148 1.07254 1.61078 1.13866 1.23196 1.01179 0.99475 0.80894 1.22460 0.89356 0.97402 0.98575 1.62114 1.03817 1.57720 1.02588 1.19730 0.94550 0.93068 0.85823 1.21188 1.29299 1.13270 0.90888 0.91698 1.24995 0.95191 0.95275 0.99165 1.69965 1.33281 1.26366 1.24177 0.86439 0.78317 0.80031 0.82639 1.19576 1.21119 1.21014 1.22378 1.00085 0.95585 0.90671 1.21934 0.77598 1.01885 0.99317 0.92446 0.92568 0.92490 0.90047 0.91886 0.90103 0.89875 0.92003 0.92128 0.92303 0.87928 0.90960 0.90627 0.85006 0.95935 0.88365 0.99129 0.95039 0.92950 0.95489 0.89847 0.89186 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.80 37.16 0.36 -0.65 16 2 C -0.14 -1.24 5.36 -26.73 -0.14 -1.38 16 3 C 0.14 1.24 2.97 -66.95 -0.20 1.04 16 4 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 5 C -0.12 -0.78 4.82 -24.89 -0.12 -0.90 16 6 C -0.11 -0.77 3.64 -88.47 -0.32 -1.09 16 7 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 8 C -0.14 -0.75 9.29 37.16 0.35 -0.40 16 9 C 0.10 0.98 5.60 -2.52 -0.01 0.97 16 10 N -0.59 -6.79 3.07 -163.51 -0.50 -7.29 16 11 C 0.52 7.50 7.60 -11.59 -0.09 7.41 16 12 O -0.51 -7.92 12.01 5.50 0.07 -7.86 16 13 C 0.51 7.88 7.71 -11.58 -0.09 7.79 16 14 O -0.53 -8.58 13.24 5.50 0.07 -8.51 16 15 N -0.57 -9.27 3.00 -172.69 -0.52 -9.79 16 16 C 0.07 1.24 6.17 -3.37 -0.02 1.22 16 17 C 0.05 1.01 5.47 -3.47 -0.02 0.99 16 18 N -0.54 -11.54 4.62 -235.48 -1.09 -12.62 16 19 C 0.19 5.00 4.72 -4.98 -0.02 4.98 16 20 C -0.51 -14.12 8.41 -34.44 -0.29 -14.41 16 21 H 0.06 1.78 7.13 -52.49 -0.37 1.41 16 22 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 23 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 24 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 29 C 0.11 1.79 6.61 -3.61 -0.02 1.77 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.31 7.10 -51.93 -0.37 -0.06 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.94 6.67 -51.92 -0.35 0.59 16 34 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 35 H 0.08 0.46 7.61 -51.93 -0.40 0.06 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.06 0.30 8.11 -51.93 -0.42 -0.12 16 40 H 0.10 1.18 6.07 -51.93 -0.32 0.86 16 41 H 0.07 0.68 8.03 -51.93 -0.42 0.26 16 42 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.13 2.19 4.36 -54.65 -0.24 1.95 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.10 2.06 6.67 -51.93 -0.35 1.71 16 46 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 47 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 48 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 49 H 0.03 0.51 8.14 -51.94 -0.42 0.09 16 50 H 0.08 1.44 7.99 -51.93 -0.41 1.03 16 51 H 0.09 1.32 7.04 -51.93 -0.37 0.96 16 52 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 398.21 15.07 6.00 6.00 Total: -1.00 -31.09 398.21 -10.06 -41.15 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -9.05 Total: -1.27 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -0.76 Total: 9.54 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -1.37 Total: -55.60 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.14 Total: -16.36 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.09 -10.06 -41.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601461287.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.177 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds