Wall clock time and date at job start Tue Mar 31 2020 20:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47341 * 2 1 4 4 H 1.08992 * 109.87456 * 301.73412 * 3 2 1 5 5 C 1.54333 * 109.87848 * 62.90895 * 3 2 1 6 6 C 1.55155 * 102.94042 * 141.61183 * 5 3 2 7 7 H 1.08999 * 111.00717 * 82.57407 * 6 5 3 8 8 C 1.53005 * 111.00306 * 206.42501 * 6 5 3 9 9 C 1.54916 * 101.58433 * 324.49486 * 6 5 3 10 10 N 1.47021 * 109.88475 * 180.71600 * 3 2 1 11 11 C 1.34772 * 125.64791 * 61.60958 * 10 3 2 12 12 O 1.21348 * 119.99914 * 355.30877 * 11 10 3 13 13 C 1.49454 * 120.00193 * 175.31166 * 11 10 3 14 14 O 1.21349 * 119.99709 * 6.72116 * 13 11 10 15 15 N 1.34774 * 120.00251 * 186.71687 * 13 11 10 16 16 C 1.47083 * 120.88054 * 6.65321 * 15 13 11 17 17 C 1.53690 * 108.27929 * 128.75083 * 16 15 13 18 18 N 1.46896 * 109.25790 * 54.07861 * 17 16 15 19 19 C 1.46893 * 111.00241 * 172.60642 * 18 17 16 20 20 C 1.50702 * 109.47477 * 294.30416 * 19 18 17 21 21 H 1.08002 * 119.99677 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00280 * 179.97438 * 20 19 18 23 23 N 1.31506 * 120.00156 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99807 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47301 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47027 * 120.00268 * 24 22 20 27 27 H 1.48504 * 109.46858 * 239.99792 * 24 22 20 28 28 C 1.46898 * 111.27133 * 296.75866 * 18 17 16 29 29 C 1.47074 * 120.88312 * 186.92208 * 15 13 11 30 30 H 1.09003 * 109.47206 * 184.96371 * 1 2 3 31 31 H 1.08995 * 109.47165 * 304.96712 * 1 2 3 32 32 H 1.08995 * 109.47123 * 64.96484 * 1 2 3 33 33 H 1.09011 * 109.47118 * 240.00055 * 2 1 3 34 34 H 1.09006 * 109.47432 * 120.00352 * 2 1 3 35 35 H 1.08998 * 110.71826 * 23.24409 * 5 3 2 36 36 H 1.08998 * 110.71758 * 259.97678 * 5 3 2 37 37 H 1.08997 * 109.46970 * 173.65096 * 8 6 5 38 38 H 1.08997 * 109.46668 * 293.64884 * 8 6 5 39 39 H 1.08994 * 109.46844 * 53.64649 * 8 6 5 40 40 H 1.08996 * 110.36962 * 155.84417 * 9 6 5 41 41 H 1.08998 * 110.36568 * 278.06662 * 9 6 5 42 42 H 1.09003 * 109.62739 * 248.52205 * 16 15 13 43 43 H 1.08999 * 109.62696 * 9.09534 * 16 15 13 44 44 H 1.09000 * 109.64577 * 294.07506 * 17 16 15 45 45 H 1.09002 * 109.41894 * 173.94908 * 17 16 15 46 46 H 1.08992 * 109.47278 * 54.30321 * 19 18 17 47 47 H 1.09002 * 109.47347 * 174.30899 * 19 18 17 48 48 H 0.97001 * 120.00254 * 179.97438 * 23 22 20 49 49 H 1.08989 * 109.49278 * 303.14310 * 28 18 17 50 50 H 1.09006 * 109.49322 * 183.06044 * 28 18 17 51 51 H 1.09002 * 109.63029 * 350.90221 * 29 15 13 52 52 H 1.09001 * 109.62910 * 111.28558 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6553 1.9715 -0.8718 5 6 1.5918 2.1576 1.2921 6 6 2.8237 3.0295 1.6519 7 1 2.8212 3.9615 1.0866 8 6 2.8814 3.3032 3.1561 9 6 3.9926 2.1145 1.2088 10 7 3.5101 1.4531 -0.0173 11 6 4.2879 0.9420 -0.9921 12 8 3.7837 0.3420 -1.9186 13 6 5.7713 1.1142 -0.9320 14 8 6.2857 1.6052 0.0512 15 7 6.5376 0.7240 -1.9698 16 6 5.9284 0.2620 -3.2263 17 6 6.5674 1.0411 -4.3868 18 7 8.0281 0.9020 -4.3174 19 6 8.6693 1.4834 -5.5044 20 6 8.2835 0.6873 -6.7244 21 1 7.6279 -0.1655 -6.6277 22 6 8.7675 1.0477 -7.9641 23 7 9.5661 2.0858 -8.0819 24 14 8.2886 0.0613 -9.4765 25 1 7.3877 -1.0498 -9.0780 26 1 7.5881 0.9451 -10.4426 27 1 9.5102 -0.4959 -10.1112 28 6 8.5623 1.4979 -3.0856 29 6 8.0050 0.7433 -1.8738 30 1 -0.3634 -1.0238 0.0889 31 1 -0.3633 0.5889 0.8421 32 1 -0.3633 0.4349 -0.9311 33 1 1.8934 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8900 35 1 1.3871 1.4346 2.0818 36 1 0.7187 2.7824 1.1040 37 1 3.8112 3.8189 3.3962 38 1 2.0352 3.9266 3.4447 39 1 2.8390 2.3591 3.6990 40 1 4.8802 2.7098 0.9945 41 1 4.2094 1.3756 1.9803 42 1 6.1128 -0.8049 -3.3520 43 1 4.8551 0.4507 -3.2039 44 1 6.2984 2.0948 -4.3129 45 1 6.2083 0.6392 -5.3343 46 1 8.3413 2.5157 -5.6255 47 1 9.7521 1.4581 -5.3816 48 1 9.9069 2.3392 -8.9540 49 1 8.2656 2.5451 -3.0298 50 1 9.6500 1.4272 -3.0893 51 1 8.3054 1.2503 -0.9569 52 1 8.3851 -0.2783 -1.8686 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601461287.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:09 Heat of formation + Delta-G solvation = -66.979681 kcal Electronic energy + Delta-G solvation = -30600.722311 eV Core-core repulsion = 26599.885736 eV Total energy + Delta-G solvation = -4000.836575 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.24125 -40.61993 -39.04119 -38.99477 -36.08920 -34.77624 -34.46614 -33.77456 -32.23748 -30.20073 -29.47997 -27.89721 -27.34363 -26.05628 -24.86428 -24.35347 -23.43359 -22.27025 -21.50973 -21.01900 -20.10863 -18.54253 -18.37582 -18.21976 -17.70443 -17.01645 -16.66656 -16.30154 -16.04463 -15.82427 -15.64941 -15.57023 -15.37804 -15.13343 -14.82779 -14.55791 -14.38964 -14.10270 -14.01346 -13.73888 -13.60101 -13.44495 -13.09012 -13.03751 -12.88592 -12.75084 -12.69303 -12.61523 -12.41141 -12.36610 -12.16862 -12.15378 -12.11077 -11.82701 -11.60338 -11.44429 -11.36300 -11.29983 -10.64310 -10.24995 -10.02600 -9.78955 -9.11515 -8.22290 -6.32341 0.23827 1.11069 1.41123 1.41800 1.55583 1.99162 2.22422 2.39833 2.98673 3.10039 3.20763 3.47317 3.62197 3.80662 3.88649 3.97459 4.05862 4.16288 4.18339 4.25045 4.30524 4.37373 4.41265 4.51260 4.54233 4.63646 4.68237 4.73109 4.75442 4.82377 4.86934 4.89408 4.91479 4.97810 5.05668 5.08972 5.13558 5.15521 5.15876 5.20672 5.25049 5.31358 5.34447 5.46408 5.47720 5.62184 5.93747 6.00699 6.12629 6.24223 6.49071 6.53138 6.81965 6.83308 7.37532 8.89278 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.002539 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.176142 B =11025.992344 C =12008.274889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.128 3.872 4 H 0.074 0.926 5 C -0.112 4.112 6 C -0.103 4.103 7 H 0.084 0.916 8 C -0.136 4.136 9 C 0.096 3.904 10 N -0.584 5.584 11 C 0.518 3.482 12 O -0.527 6.527 13 C 0.505 3.495 14 O -0.537 6.537 15 N -0.579 5.579 16 C 0.091 3.909 17 C 0.055 3.945 18 N -0.540 5.540 19 C 0.208 3.792 20 C -0.522 4.522 21 H 0.066 0.934 22 C 0.001 3.999 23 N -0.935 5.935 24 Si 0.970 3.030 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.278 1.278 28 C 0.043 3.957 29 C 0.124 3.876 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.139 0.861 44 H 0.011 0.989 45 H 0.083 0.917 46 H -0.041 1.041 47 H 0.010 0.990 48 H 0.265 0.735 49 H 0.017 0.983 50 H 0.090 0.910 51 H 0.104 0.896 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.457 -0.158 24.062 30.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.026 3.974 4 H 0.092 0.908 5 C -0.150 4.150 6 C -0.122 4.122 7 H 0.102 0.898 8 C -0.193 4.193 9 C -0.026 4.026 10 N -0.316 5.316 11 C 0.302 3.698 12 O -0.406 6.406 13 C 0.288 3.712 14 O -0.416 6.416 15 N -0.312 5.312 16 C -0.030 4.030 17 C -0.074 4.074 18 N -0.265 5.265 19 C 0.082 3.918 20 C -0.561 4.561 21 H 0.084 0.916 22 C -0.197 4.197 23 N -0.575 5.575 24 Si 0.794 3.206 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.204 1.204 28 C -0.086 4.086 29 C 0.002 3.998 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.156 0.844 44 H 0.029 0.971 45 H 0.101 0.899 46 H -0.023 1.023 47 H 0.028 0.972 48 H 0.073 0.927 49 H 0.035 0.965 50 H 0.108 0.892 51 H 0.122 0.878 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.188 -0.647 23.929 30.063 hybrid contribution 0.477 0.663 -1.480 1.690 sum -17.711 0.017 22.449 28.595 Atomic orbital electron populations 1.21698 0.93054 1.02612 1.02678 1.21857 0.97866 0.95319 1.02068 1.22045 0.77233 0.97587 1.00537 0.90773 1.22864 0.98325 0.98826 0.94935 1.22424 0.93307 0.97810 0.98665 0.89786 1.21661 1.02840 1.02555 0.92268 1.22878 0.98747 0.96128 0.84861 1.48514 1.07896 1.55009 1.20179 1.19756 0.87344 0.80284 0.82436 1.90498 1.74861 1.41835 1.33381 1.20158 0.88155 0.79375 0.83471 1.90661 1.74772 1.43708 1.32443 1.48183 1.07519 1.61568 1.13928 1.22994 1.01115 0.98943 0.79957 1.22426 0.88377 0.97161 0.99437 1.62048 1.04688 1.57494 1.02297 1.19385 0.93399 0.91399 0.87592 1.21480 1.29314 1.13408 0.91857 0.91595 1.25918 0.94971 0.96279 1.02495 1.70089 1.34343 1.27948 1.25170 0.85321 0.78207 0.78624 0.78402 1.18565 1.20520 1.20390 1.22454 1.00647 0.95314 0.90209 1.21874 0.77408 1.02271 0.98260 0.92125 0.90502 0.92782 0.93053 0.91717 0.88702 0.87688 0.92342 0.90612 0.91729 0.89865 0.90412 0.90261 0.84391 0.97058 0.89871 1.02319 0.97218 0.92667 0.96461 0.89158 0.87779 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.80 71.98 0.71 -0.94 16 2 C -0.13 -2.23 5.36 30.59 0.16 -2.06 16 3 C 0.13 2.14 2.97 45.34 0.13 2.27 16 4 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 5 C -0.11 -1.06 4.82 31.79 0.15 -0.91 16 6 C -0.10 -1.18 3.64 -9.40 -0.03 -1.21 16 7 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 8 C -0.14 -1.06 9.29 71.98 0.67 -0.39 16 9 C 0.10 1.74 5.60 86.86 0.49 2.23 16 10 N -0.58 -12.97 3.07 -789.59 -2.42 -15.39 16 11 C 0.52 14.74 7.60 87.27 0.66 15.41 16 12 O -0.53 -16.55 12.01 -3.24 -0.04 -16.58 16 13 C 0.51 15.56 7.71 87.27 0.67 16.24 16 14 O -0.54 -16.97 13.24 -3.24 -0.04 -17.01 16 15 N -0.58 -18.63 3.00 -818.64 -2.46 -21.09 16 16 C 0.09 3.08 6.17 86.50 0.53 3.62 16 17 C 0.05 2.23 5.47 86.54 0.47 2.70 16 18 N -0.54 -23.81 4.62 -898.93 -4.15 -27.96 16 19 C 0.21 11.24 4.72 85.56 0.40 11.65 16 20 C -0.52 -29.68 8.41 25.60 0.22 -29.47 16 21 H 0.07 3.66 7.13 -2.91 -0.02 3.64 16 22 C 0.00 0.08 5.46 84.66 0.46 0.54 16 23 N -0.93 -56.60 13.29 21.44 0.28 -56.32 16 24 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 25 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 28 C 0.04 1.57 5.62 86.38 0.49 2.06 16 29 C 0.12 3.79 6.61 86.35 0.57 4.36 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.58 7.10 -2.39 -0.02 0.56 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 1.18 6.67 -2.38 -0.02 1.17 16 34 H 0.06 1.05 8.12 -2.38 -0.02 1.03 16 35 H 0.09 0.70 7.61 -2.39 -0.02 0.68 16 36 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.06 0.45 8.11 -2.39 -0.02 0.43 16 40 H 0.08 1.87 6.07 -2.39 -0.01 1.85 16 41 H 0.08 1.35 8.03 -2.39 -0.02 1.33 16 42 H 0.08 2.62 8.14 -2.39 -0.02 2.61 16 43 H 0.14 4.61 4.36 -45.52 -0.20 4.41 16 44 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.08 3.60 6.67 -2.39 -0.02 3.58 16 46 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 47 H 0.01 0.56 7.97 -2.39 -0.02 0.54 16 48 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 49 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.09 3.17 7.99 -2.38 -0.02 3.15 16 51 H 0.10 2.93 7.04 -2.39 -0.02 2.91 16 52 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -68.29 398.21 0.66 -67.63 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.70 Total: 14.15 kcal Atomic # 6 Polarization: 19.31 SS G_CDS: 6.76 Total: 26.07 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -8.75 Total: -120.75 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.08 Total: -33.59 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -68.29 0.66 -67.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601461287.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.648 kcal (2) G-P(sol) polarization free energy of solvation -68.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds