Wall clock time and date at job start Tue Mar 31 2020 20:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47167 * 2 1 4 4 H 1.08996 * 109.99692 * 61.30705 * 3 2 1 5 5 C 1.54336 * 109.98822 * 300.26993 * 3 2 1 6 6 C 1.55156 * 103.01877 * 218.66441 * 5 3 2 7 7 H 1.09004 * 111.00090 * 277.23268 * 6 5 3 8 8 C 1.53005 * 111.03496 * 153.40105 * 6 5 3 9 9 C 1.54897 * 101.58345 * 35.31054 * 6 5 3 10 10 N 1.47015 * 109.88464 * 182.40736 * 3 2 1 11 11 C 1.34781 * 125.64790 * 298.39289 * 10 3 2 12 12 O 1.21357 * 119.99625 * 3.91970 * 11 10 3 13 13 C 1.49449 * 120.00423 * 183.91702 * 11 10 3 14 14 O 1.21351 * 119.99860 * 353.55080 * 13 11 10 15 15 N 1.34773 * 119.99759 * 173.54965 * 13 11 10 16 16 C 1.47075 * 120.88653 * 353.97644 * 15 13 11 17 17 C 1.53241 * 108.52281 * 231.20895 * 16 15 13 18 18 N 1.46900 * 109.33870 * 306.16961 * 17 16 15 19 19 C 1.46904 * 111.00015 * 187.25556 * 18 17 16 20 20 C 1.50704 * 109.47013 * 169.99861 * 19 18 17 21 21 H 1.07993 * 120.00059 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99727 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00116 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99777 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47455 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46968 * 120.00706 * 24 22 20 27 27 H 1.48498 * 109.47353 * 240.00408 * 24 22 20 28 28 C 1.46896 * 111.27115 * 63.10180 * 18 17 16 29 29 C 1.47087 * 120.87815 * 173.99988 * 15 13 11 30 30 H 1.08999 * 109.47136 * 305.07830 * 1 2 3 31 31 H 1.09002 * 109.47355 * 65.07794 * 1 2 3 32 32 H 1.09002 * 109.47242 * 185.07837 * 1 2 3 33 33 H 1.09000 * 109.47160 * 240.00449 * 2 1 3 34 34 H 1.08995 * 109.47331 * 120.00163 * 2 1 3 35 35 H 1.09005 * 110.85063 * 100.19782 * 5 3 2 36 36 H 1.08996 * 110.67488 * 337.05072 * 5 3 2 37 37 H 1.08994 * 109.46951 * 306.32902 * 8 6 5 38 38 H 1.08996 * 109.47335 * 66.32876 * 8 6 5 39 39 H 1.08999 * 109.46846 * 186.33070 * 8 6 5 40 40 H 1.09003 * 110.37168 * 204.15484 * 9 6 5 41 41 H 1.08994 * 110.36983 * 81.82787 * 9 6 5 42 42 H 1.08994 * 109.62804 * 111.49682 * 16 15 13 43 43 H 1.09000 * 109.62751 * 350.91310 * 16 15 13 44 44 H 1.09001 * 109.49271 * 186.20998 * 17 16 15 45 45 H 1.09000 * 109.49338 * 66.12917 * 17 16 15 46 46 H 1.09003 * 109.46446 * 289.99678 * 19 18 17 47 47 H 1.08996 * 109.46826 * 49.99691 * 19 18 17 48 48 H 0.96992 * 120.00349 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.49076 * 56.85737 * 28 18 17 50 50 H 1.09001 * 109.49588 * 176.90637 * 28 18 17 51 51 H 1.09006 * 109.62897 * 9.08377 * 29 15 13 52 52 H 1.09000 * 109.78712 * 248.59707 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7006 1.9579 0.8985 5 6 1.5266 2.1836 -1.2526 6 6 2.7408 3.0576 -1.6639 7 1 2.7717 3.9807 -1.0851 8 6 2.7201 3.3552 -3.1646 9 6 3.9281 2.1326 -1.2977 10 7 3.5090 1.4535 -0.0581 11 6 4.3356 0.9252 0.8661 12 8 3.8787 0.3202 1.8137 13 6 5.8148 1.0843 0.7239 14 8 6.2774 1.5854 -0.2798 15 7 6.6348 0.6713 1.7105 16 6 6.0932 0.1833 2.9878 17 6 6.7904 0.9305 4.1296 18 7 8.2458 0.7975 3.9808 19 6 8.9471 1.3522 5.1463 20 6 10.4065 0.9828 5.0771 21 1 10.7760 0.3945 4.2503 22 6 11.2700 1.3960 6.0695 23 7 10.8199 2.1120 7.0766 24 14 13.0788 0.9375 5.9841 25 1 13.3285 0.1337 4.7607 26 1 13.9011 2.1733 5.9404 27 1 13.4448 0.1415 7.1831 28 6 8.7138 1.4242 2.7374 29 6 8.0954 0.6972 1.5386 30 1 -0.3633 0.5906 0.8410 31 1 -0.3634 0.4330 -0.9320 32 1 -0.3634 -1.0236 0.0910 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.6669 2.8080 -1.0089 36 1 1.2756 1.4759 -2.0426 37 1 2.6458 2.4200 -3.7195 38 1 1.8620 3.9854 -3.3982 39 1 3.6377 3.8723 -3.4452 40 1 4.8280 2.7219 -1.1217 41 1 4.0997 1.4039 -2.0899 42 1 6.2821 -0.8861 3.0809 43 1 5.0206 0.3733 3.0272 44 1 6.4821 0.5050 5.0846 45 1 6.5162 1.9849 4.0952 46 1 8.8467 2.4376 5.1480 47 1 8.5122 0.9456 6.0593 48 1 11.4272 2.4024 7.7749 49 1 8.4128 2.4717 2.7223 50 1 9.8004 1.3573 2.6828 51 1 8.3466 1.2270 0.6196 52 1 8.4794 -0.3218 1.4903 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601461288.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:13 Heat of formation + Delta-G solvation = -47.095931 kcal Electronic energy + Delta-G solvation = -30535.275788 eV Core-core repulsion = 26535.301437 eV Total energy + Delta-G solvation = -3999.974351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.15327 -39.54441 -37.96481 -37.56970 -34.49674 -34.15579 -33.00548 -32.36848 -30.78268 -28.90949 -28.45086 -26.82504 -25.99163 -24.98651 -23.75831 -22.83304 -21.90308 -21.16258 -20.79079 -19.89823 -18.92129 -17.42185 -17.07347 -16.57353 -16.30065 -15.84833 -15.32822 -15.14074 -14.75162 -14.54038 -14.44051 -14.28749 -14.03001 -13.84808 -13.66972 -13.51884 -13.48521 -13.07895 -12.92545 -12.75242 -12.52739 -12.30977 -12.06602 -12.02440 -11.83809 -11.54627 -11.39448 -11.25466 -11.16969 -11.02912 -10.88492 -10.81792 -10.73500 -10.68536 -10.55967 -10.45618 -9.88273 -9.32687 -9.06744 -8.91444 -8.54865 -8.44964 -7.30710 -6.05297 -4.07087 1.40990 2.18182 3.17015 3.29780 3.33899 3.37407 3.41938 4.01850 4.10913 4.35062 4.38426 4.40521 4.68708 4.82269 4.88178 4.90827 4.99936 5.11842 5.12777 5.28461 5.30330 5.32587 5.36738 5.39842 5.45887 5.51454 5.57917 5.62460 5.68056 5.70436 5.73740 5.76201 5.81834 5.83638 5.88481 5.92964 5.96383 6.10123 6.23512 6.29969 6.44189 6.50356 6.62482 7.02278 7.23547 7.29385 7.34819 7.63993 7.76051 7.99979 8.03179 8.13650 8.49281 9.00493 9.57452 11.05602 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023344 B = 0.002343 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.157052 B =11949.879389 C =12600.879500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.136 3.864 4 H 0.080 0.920 5 C -0.123 4.123 6 C -0.111 4.111 7 H 0.085 0.915 8 C -0.140 4.140 9 C 0.101 3.899 10 N -0.589 5.589 11 C 0.524 3.476 12 O -0.509 6.509 13 C 0.505 3.495 14 O -0.531 6.531 15 N -0.571 5.571 16 C 0.075 3.925 17 C 0.041 3.959 18 N -0.537 5.537 19 C 0.193 3.807 20 C -0.508 4.508 21 H 0.064 0.936 22 C 0.055 3.945 23 N -0.898 5.898 24 Si 0.898 3.102 25 H -0.272 1.272 26 H -0.285 1.285 27 H -0.284 1.284 28 C 0.052 3.948 29 C 0.111 3.889 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.135 0.865 44 H 0.083 0.917 45 H 0.024 0.976 46 H -0.009 1.009 47 H 0.032 0.968 48 H 0.261 0.739 49 H 0.025 0.975 50 H 0.099 0.901 51 H 0.090 0.910 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.054 0.074 -18.996 28.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.033 3.967 4 H 0.098 0.902 5 C -0.161 4.161 6 C -0.130 4.130 7 H 0.104 0.896 8 C -0.197 4.197 9 C -0.022 4.022 10 N -0.322 5.322 11 C 0.309 3.691 12 O -0.387 6.387 13 C 0.287 3.713 14 O -0.409 6.409 15 N -0.303 5.303 16 C -0.047 4.047 17 C -0.089 4.089 18 N -0.262 5.262 19 C 0.068 3.932 20 C -0.547 4.547 21 H 0.083 0.917 22 C -0.146 4.146 23 N -0.537 5.537 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.211 1.211 27 H -0.210 1.210 28 C -0.077 4.077 29 C -0.011 4.011 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.152 0.848 44 H 0.101 0.899 45 H 0.042 0.958 46 H 0.009 0.991 47 H 0.050 0.950 48 H 0.071 0.929 49 H 0.043 0.957 50 H 0.117 0.883 51 H 0.108 0.892 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.801 -0.437 -18.796 28.038 hybrid contribution 0.934 0.647 0.320 1.180 sum -19.867 0.209 -18.475 27.131 Atomic orbital electron populations 1.21724 0.94954 1.02022 1.01822 1.21907 0.96244 0.95833 1.03494 1.21782 0.78744 0.96923 0.99237 0.90190 1.22838 0.97964 0.98576 0.96720 1.22447 0.94484 0.98426 0.97633 0.89640 1.21675 1.02324 1.01931 0.93800 1.22756 0.98592 0.95447 0.85359 1.48373 1.06521 1.55569 1.21762 1.20006 0.87533 0.79579 0.82005 1.90495 1.77130 1.40792 1.30235 1.19853 0.87141 0.80147 0.84130 1.90672 1.76942 1.43509 1.29801 1.48137 1.07201 1.60140 1.14806 1.23046 1.01931 0.99131 0.80546 1.22442 0.90403 0.97843 0.98182 1.62114 1.02263 1.57994 1.03865 1.19734 0.93752 0.92821 0.86873 1.21183 0.92379 1.33026 1.08101 0.91742 1.25000 0.99104 0.95197 0.95344 1.69964 1.35304 1.37095 1.11371 0.86436 0.84757 0.78121 0.78075 1.19622 1.21128 1.21001 1.22320 1.01458 0.94739 0.89160 1.22037 0.77189 1.02167 0.99661 0.92505 0.92601 0.92428 0.91831 0.90136 0.89879 0.90124 0.92299 0.92125 0.91977 0.87899 0.90924 0.90676 0.84832 0.89907 0.95778 0.99132 0.94986 0.92938 0.95713 0.88273 0.89167 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.57 37.16 0.36 -0.59 16 2 C -0.14 -1.18 5.35 -26.73 -0.14 -1.33 16 3 C 0.14 1.20 3.00 -66.95 -0.20 1.00 16 4 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 5 C -0.12 -0.76 4.95 -24.89 -0.12 -0.88 16 6 C -0.11 -0.76 3.64 -88.48 -0.32 -1.08 16 7 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 8 C -0.14 -0.75 9.30 37.16 0.35 -0.40 16 9 C 0.10 0.97 5.58 -2.53 -0.01 0.96 16 10 N -0.59 -6.66 3.06 -163.52 -0.50 -7.16 16 11 C 0.52 7.37 7.60 -11.58 -0.09 7.28 16 12 O -0.51 -7.70 12.06 5.49 0.07 -7.64 16 13 C 0.50 7.87 7.72 -11.59 -0.09 7.78 16 14 O -0.53 -8.67 13.24 5.50 0.07 -8.59 16 15 N -0.57 -9.27 3.01 -172.97 -0.52 -9.79 16 16 C 0.07 1.20 6.16 -3.60 -0.02 1.18 16 17 C 0.04 0.75 5.62 -3.70 -0.02 0.73 16 18 N -0.54 -11.55 4.62 -235.76 -1.09 -12.64 16 19 C 0.19 5.01 4.72 -4.97 -0.02 4.98 16 20 C -0.51 -14.09 8.41 -34.44 -0.29 -14.38 16 21 H 0.06 1.76 7.13 -52.49 -0.37 1.38 16 22 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 23 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 24 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 C 0.05 1.02 5.46 -3.70 -0.02 1.00 16 29 C 0.11 1.83 6.61 -3.60 -0.02 1.81 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.29 7.21 -51.93 -0.37 -0.08 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.89 6.79 -51.93 -0.35 0.54 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.44 7.40 -51.93 -0.38 0.06 16 37 H 0.06 0.30 8.11 -51.93 -0.42 -0.12 16 38 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.10 1.19 6.09 -51.93 -0.32 0.87 16 41 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.13 2.09 4.31 -54.91 -0.24 1.86 16 44 H 0.08 1.48 7.99 -51.93 -0.41 1.07 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 47 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 48 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.10 2.03 6.67 -51.93 -0.35 1.68 16 51 H 0.09 1.41 7.04 -51.93 -0.37 1.05 16 52 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 398.18 15.07 6.00 6.00 Total: -1.00 -31.02 398.18 -10.08 -41.10 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -9.05 Total: -1.40 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -0.78 Total: 9.51 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -1.37 Total: -55.46 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.14 Total: -16.23 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.02 -10.08 -41.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601461288.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.992 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds