Wall clock time and date at job start Tue Mar 31 2020 20:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47167 * 2 1 4 4 H 1.08996 * 109.99692 * 61.30705 * 3 2 1 5 5 C 1.54336 * 109.98822 * 300.26993 * 3 2 1 6 6 C 1.55156 * 103.01877 * 218.66441 * 5 3 2 7 7 H 1.09004 * 111.00090 * 277.23268 * 6 5 3 8 8 C 1.53005 * 111.03496 * 153.40105 * 6 5 3 9 9 C 1.54897 * 101.58345 * 35.31054 * 6 5 3 10 10 N 1.47015 * 109.88464 * 182.40736 * 3 2 1 11 11 C 1.34781 * 125.64790 * 298.39289 * 10 3 2 12 12 O 1.21357 * 119.99625 * 3.91970 * 11 10 3 13 13 C 1.49449 * 120.00423 * 183.91702 * 11 10 3 14 14 O 1.21351 * 119.99860 * 353.55080 * 13 11 10 15 15 N 1.34773 * 119.99759 * 173.54965 * 13 11 10 16 16 C 1.47075 * 120.88653 * 353.97644 * 15 13 11 17 17 C 1.53241 * 108.52281 * 231.20895 * 16 15 13 18 18 N 1.46900 * 109.33870 * 306.16961 * 17 16 15 19 19 C 1.46904 * 111.00015 * 187.25556 * 18 17 16 20 20 C 1.50704 * 109.47013 * 169.99861 * 19 18 17 21 21 H 1.07993 * 120.00059 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99727 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00116 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99777 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47455 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46968 * 120.00706 * 24 22 20 27 27 H 1.48498 * 109.47353 * 240.00408 * 24 22 20 28 28 C 1.46896 * 111.27115 * 63.10180 * 18 17 16 29 29 C 1.47087 * 120.87815 * 173.99988 * 15 13 11 30 30 H 1.08999 * 109.47136 * 305.07830 * 1 2 3 31 31 H 1.09002 * 109.47355 * 65.07794 * 1 2 3 32 32 H 1.09002 * 109.47242 * 185.07837 * 1 2 3 33 33 H 1.09000 * 109.47160 * 240.00449 * 2 1 3 34 34 H 1.08995 * 109.47331 * 120.00163 * 2 1 3 35 35 H 1.09005 * 110.85063 * 100.19782 * 5 3 2 36 36 H 1.08996 * 110.67488 * 337.05072 * 5 3 2 37 37 H 1.08994 * 109.46951 * 306.32902 * 8 6 5 38 38 H 1.08996 * 109.47335 * 66.32876 * 8 6 5 39 39 H 1.08999 * 109.46846 * 186.33070 * 8 6 5 40 40 H 1.09003 * 110.37168 * 204.15484 * 9 6 5 41 41 H 1.08994 * 110.36983 * 81.82787 * 9 6 5 42 42 H 1.08994 * 109.62804 * 111.49682 * 16 15 13 43 43 H 1.09000 * 109.62751 * 350.91310 * 16 15 13 44 44 H 1.09001 * 109.49271 * 186.20998 * 17 16 15 45 45 H 1.09000 * 109.49338 * 66.12917 * 17 16 15 46 46 H 1.09003 * 109.46446 * 289.99678 * 19 18 17 47 47 H 1.08996 * 109.46826 * 49.99691 * 19 18 17 48 48 H 0.96992 * 120.00349 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.49076 * 56.85737 * 28 18 17 50 50 H 1.09001 * 109.49588 * 176.90637 * 28 18 17 51 51 H 1.09006 * 109.62897 * 9.08377 * 29 15 13 52 52 H 1.09000 * 109.78712 * 248.59707 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7006 1.9579 0.8985 5 6 1.5266 2.1836 -1.2526 6 6 2.7408 3.0576 -1.6639 7 1 2.7717 3.9807 -1.0851 8 6 2.7201 3.3552 -3.1646 9 6 3.9281 2.1326 -1.2977 10 7 3.5090 1.4535 -0.0581 11 6 4.3356 0.9252 0.8661 12 8 3.8787 0.3202 1.8137 13 6 5.8148 1.0843 0.7239 14 8 6.2774 1.5854 -0.2798 15 7 6.6348 0.6713 1.7105 16 6 6.0932 0.1833 2.9878 17 6 6.7904 0.9305 4.1296 18 7 8.2458 0.7975 3.9808 19 6 8.9471 1.3522 5.1463 20 6 10.4065 0.9828 5.0771 21 1 10.7760 0.3945 4.2503 22 6 11.2700 1.3960 6.0695 23 7 10.8199 2.1120 7.0766 24 14 13.0788 0.9375 5.9841 25 1 13.3285 0.1337 4.7607 26 1 13.9011 2.1733 5.9404 27 1 13.4448 0.1415 7.1831 28 6 8.7138 1.4242 2.7374 29 6 8.0954 0.6972 1.5386 30 1 -0.3633 0.5906 0.8410 31 1 -0.3634 0.4330 -0.9320 32 1 -0.3634 -1.0236 0.0910 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.6669 2.8080 -1.0089 36 1 1.2756 1.4759 -2.0426 37 1 2.6458 2.4200 -3.7195 38 1 1.8620 3.9854 -3.3982 39 1 3.6377 3.8723 -3.4452 40 1 4.8280 2.7219 -1.1217 41 1 4.0997 1.4039 -2.0899 42 1 6.2821 -0.8861 3.0809 43 1 5.0206 0.3733 3.0272 44 1 6.4821 0.5050 5.0846 45 1 6.5162 1.9849 4.0952 46 1 8.8467 2.4376 5.1480 47 1 8.5122 0.9456 6.0593 48 1 11.4272 2.4024 7.7749 49 1 8.4128 2.4717 2.7223 50 1 9.8004 1.3573 2.6828 51 1 8.3466 1.2270 0.6196 52 1 8.4794 -0.3218 1.4903 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601461288.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:12 Heat of formation + Delta-G solvation = -66.690669 kcal Electronic energy + Delta-G solvation = -30536.125480 eV Core-core repulsion = 26535.301437 eV Total energy + Delta-G solvation = -4000.824042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.24541 -40.62380 -39.04872 -38.99878 -36.09492 -34.77514 -34.45389 -33.78009 -32.24804 -30.27546 -29.45807 -27.82256 -27.29567 -26.21686 -24.92123 -24.13949 -23.54321 -22.27229 -21.50565 -20.99359 -20.11657 -18.59406 -18.40713 -18.15114 -17.69532 -17.02261 -16.65685 -16.29504 -16.11280 -15.83779 -15.68122 -15.52134 -15.33839 -15.15439 -14.84693 -14.54754 -14.35629 -14.13655 -14.06943 -13.72785 -13.57612 -13.44159 -13.12516 -13.03237 -12.81253 -12.74477 -12.70219 -12.59451 -12.43400 -12.35923 -12.25934 -12.11693 -12.09145 -11.78874 -11.58181 -11.49466 -11.36472 -11.30405 -10.64862 -10.23667 -10.02991 -9.79605 -9.11650 -8.22097 -6.32423 0.23613 1.10417 1.41408 1.42115 1.55678 1.99059 2.22115 2.39936 2.98198 3.10036 3.20699 3.47212 3.62359 3.80790 3.89797 3.98329 4.05400 4.16446 4.18197 4.25242 4.30974 4.36565 4.41507 4.50088 4.54313 4.62954 4.69742 4.71949 4.78422 4.82066 4.87407 4.87621 4.91390 4.97565 5.05855 5.07613 5.14157 5.15795 5.17880 5.18344 5.23701 5.32503 5.34666 5.46584 5.47576 5.62086 5.93842 6.00451 6.13474 6.23430 6.49278 6.52730 6.81372 6.83361 7.37460 8.89511 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023344 B = 0.002343 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.157052 B =11949.879389 C =12600.879500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.128 3.872 4 H 0.076 0.924 5 C -0.112 4.112 6 C -0.103 4.103 7 H 0.084 0.916 8 C -0.136 4.136 9 C 0.095 3.905 10 N -0.583 5.583 11 C 0.520 3.480 12 O -0.526 6.526 13 C 0.504 3.496 14 O -0.539 6.539 15 N -0.579 5.579 16 C 0.090 3.910 17 C 0.041 3.959 18 N -0.540 5.540 19 C 0.208 3.792 20 C -0.522 4.522 21 H 0.068 0.932 22 C 0.000 4.000 23 N -0.935 5.935 24 Si 0.971 3.029 25 H -0.261 1.261 26 H -0.280 1.280 27 H -0.279 1.279 28 C 0.056 3.944 29 C 0.123 3.877 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.144 0.856 44 H 0.086 0.914 45 H 0.016 0.984 46 H -0.041 1.041 47 H 0.008 0.992 48 H 0.264 0.736 49 H 0.012 0.988 50 H 0.088 0.912 51 H 0.101 0.899 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.235 -0.295 -21.273 30.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.027 3.973 4 H 0.094 0.906 5 C -0.150 4.150 6 C -0.122 4.122 7 H 0.102 0.898 8 C -0.194 4.194 9 C -0.026 4.026 10 N -0.315 5.315 11 C 0.304 3.696 12 O -0.405 6.405 13 C 0.287 3.713 14 O -0.417 6.417 15 N -0.311 5.311 16 C -0.031 4.031 17 C -0.088 4.088 18 N -0.265 5.265 19 C 0.082 3.918 20 C -0.560 4.560 21 H 0.086 0.914 22 C -0.198 4.198 23 N -0.576 5.576 24 Si 0.796 3.204 25 H -0.185 1.185 26 H -0.206 1.206 27 H -0.205 1.205 28 C -0.073 4.073 29 C 0.001 3.999 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.160 0.840 44 H 0.104 0.896 45 H 0.034 0.966 46 H -0.023 1.023 47 H 0.026 0.974 48 H 0.073 0.927 49 H 0.030 0.970 50 H 0.106 0.894 51 H 0.119 0.881 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.019 -0.798 -21.123 30.523 hybrid contribution 1.230 0.813 0.982 1.771 sum -20.789 0.014 -20.141 28.946 Atomic orbital electron populations 1.21696 0.92963 1.02408 1.02917 1.21840 0.97904 0.95236 1.02041 1.22053 0.77045 0.97538 1.00712 0.90633 1.22859 0.98086 0.98571 0.95453 1.22419 0.93257 0.97717 0.98810 0.89767 1.21662 1.02836 1.02486 0.92367 1.22872 0.99283 0.95797 0.84669 1.48521 1.07595 1.54088 1.21332 1.19708 0.86995 0.80250 0.82658 1.90470 1.77015 1.41919 1.31089 1.20191 0.87972 0.79426 0.83703 1.90669 1.77406 1.43592 1.30037 1.48178 1.07155 1.60653 1.15149 1.22937 1.01898 0.98851 0.79460 1.22520 0.88659 0.97862 0.99748 1.62053 1.03759 1.57591 1.03104 1.19391 0.93843 0.90719 0.87840 1.21479 0.93275 1.33005 1.08258 0.91433 1.25941 1.04067 0.94934 0.94824 1.70093 1.37144 1.38157 1.12195 0.85300 0.78646 0.78002 0.78462 1.18452 1.20556 1.20485 1.22286 1.01062 0.94439 0.89486 1.21882 0.77445 1.02350 0.98242 0.92390 0.90646 0.92298 0.91919 0.92950 0.87659 0.88767 0.91748 0.90582 0.92409 0.89951 0.90475 0.90117 0.83958 0.89608 0.96610 1.02313 0.97377 0.92677 0.96973 0.89403 0.88104 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.57 71.98 0.69 -0.82 16 2 C -0.13 -2.11 5.35 30.59 0.16 -1.95 16 3 C 0.13 2.06 3.00 45.35 0.14 2.20 16 4 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 5 C -0.11 -1.03 4.95 31.79 0.16 -0.87 16 6 C -0.10 -1.17 3.64 -9.40 -0.03 -1.20 16 7 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 8 C -0.14 -1.07 9.30 71.98 0.67 -0.41 16 9 C 0.10 1.74 5.58 86.85 0.48 2.22 16 10 N -0.58 -12.70 3.06 -789.62 -2.42 -15.12 16 11 C 0.52 14.47 7.60 87.27 0.66 15.13 16 12 O -0.53 -15.84 12.06 -3.27 -0.04 -15.88 16 13 C 0.50 15.55 7.72 87.27 0.67 16.22 16 14 O -0.54 -17.35 13.24 -3.25 -0.04 -17.40 16 15 N -0.58 -18.65 3.01 -819.51 -2.47 -21.12 16 16 C 0.09 2.88 6.16 86.35 0.53 3.41 16 17 C 0.04 1.55 5.62 86.38 0.49 2.04 16 18 N -0.54 -23.84 4.62 -899.81 -4.16 -28.00 16 19 C 0.21 11.25 4.72 85.56 0.40 11.66 16 20 C -0.52 -29.49 8.41 25.60 0.22 -29.28 16 21 H 0.07 3.70 7.13 -2.91 -0.02 3.68 16 22 C 0.00 0.02 5.46 84.66 0.46 0.48 16 23 N -0.94 -56.62 13.29 21.45 0.28 -56.34 16 24 Si 0.97 44.25 29.54 68.60 2.03 46.27 16 25 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 28 C 0.06 2.23 5.46 86.38 0.47 2.70 16 29 C 0.12 3.99 6.61 86.35 0.57 4.56 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.52 7.21 -2.39 -0.02 0.50 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.15 6.79 -2.39 -0.02 1.13 16 35 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.09 0.67 7.40 -2.39 -0.02 0.65 16 37 H 0.06 0.46 8.11 -2.39 -0.02 0.44 16 38 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.08 1.87 6.09 -2.39 -0.01 1.86 16 41 H 0.08 1.35 8.04 -2.39 -0.02 1.33 16 42 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.14 4.45 4.31 -49.67 -0.21 4.23 16 44 H 0.09 3.16 7.99 -2.39 -0.02 3.14 16 45 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 46 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 47 H 0.01 0.47 7.97 -2.39 -0.02 0.45 16 48 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 49 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.09 3.67 6.67 -2.39 -0.02 3.65 16 51 H 0.10 3.08 7.04 -2.38 -0.02 3.07 16 52 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -68.05 398.18 0.62 -67.43 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.69 Total: 14.05 kcal Atomic # 6 Polarization: 19.36 SS G_CDS: 6.74 Total: 26.10 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -8.76 Total: -120.57 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.08 Total: -33.28 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -68.05 0.62 -67.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601461288.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.742 kcal (2) G-P(sol) polarization free energy of solvation -68.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds