Wall clock time and date at job start Tue Mar 31 2020 20:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47169 * 2 1 4 4 H 1.08992 * 109.99987 * 61.29297 * 3 2 1 5 5 C 1.54339 * 109.98960 * 300.25842 * 3 2 1 6 6 C 1.55156 * 103.02322 * 218.66615 * 5 3 2 7 7 H 1.08994 * 111.00408 * 153.37954 * 6 5 3 8 8 C 1.52998 * 111.03757 * 277.22164 * 6 5 3 9 9 C 1.54916 * 101.57954 * 35.30443 * 6 5 3 10 10 N 1.47018 * 109.88291 * 182.39685 * 3 2 1 11 11 C 1.34780 * 125.64374 * 298.38632 * 10 3 2 12 12 O 1.21347 * 119.99921 * 3.92568 * 11 10 3 13 13 C 1.49450 * 120.00036 * 183.91880 * 11 10 3 14 14 O 1.21349 * 120.00119 * 353.55733 * 13 11 10 15 15 N 1.34778 * 120.00216 * 173.54977 * 13 11 10 16 16 C 1.47083 * 120.88068 * 354.00376 * 15 13 11 17 17 C 1.53238 * 108.52235 * 231.20505 * 16 15 13 18 18 N 1.46897 * 109.33916 * 306.17061 * 17 16 15 19 19 C 1.46902 * 110.99957 * 187.25492 * 18 17 16 20 20 C 1.50700 * 109.47115 * 170.00172 * 19 18 17 21 21 H 1.08000 * 120.00241 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00067 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99867 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00213 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46842 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46993 * 119.99765 * 24 22 20 27 27 H 1.48500 * 109.47238 * 240.00000 * 24 22 20 28 28 C 1.46902 * 111.27094 * 63.10578 * 18 17 16 29 29 C 1.47077 * 120.88389 * 174.02439 * 15 13 11 30 30 H 1.08999 * 109.47078 * 185.07651 * 1 2 3 31 31 H 1.09001 * 109.47378 * 305.08168 * 1 2 3 32 32 H 1.09002 * 109.46878 * 65.07553 * 1 2 3 33 33 H 1.09001 * 109.47283 * 239.99774 * 2 1 3 34 34 H 1.08998 * 109.46917 * 119.99523 * 2 1 3 35 35 H 1.08998 * 110.84941 * 100.19544 * 5 3 2 36 36 H 1.08997 * 110.51430 * 336.97793 * 5 3 2 37 37 H 1.08996 * 109.47394 * 173.66496 * 8 6 5 38 38 H 1.09000 * 109.47034 * 293.66870 * 8 6 5 39 39 H 1.09002 * 109.47391 * 53.65949 * 8 6 5 40 40 H 1.08997 * 110.36627 * 204.15272 * 9 6 5 41 41 H 1.08999 * 110.45747 * 81.87772 * 9 6 5 42 42 H 1.09002 * 109.62605 * 111.49350 * 16 15 13 43 43 H 1.08998 * 109.62663 * 350.91734 * 16 15 13 44 44 H 1.08994 * 109.49125 * 186.20751 * 17 16 15 45 45 H 1.09006 * 109.51246 * 66.14366 * 17 16 15 46 46 H 1.09001 * 109.46668 * 290.00007 * 19 18 17 47 47 H 1.08996 * 109.47079 * 49.99950 * 19 18 17 48 48 H 0.97000 * 120.00450 * 180.02562 * 23 22 20 49 49 H 1.08999 * 109.49423 * 56.84986 * 28 18 17 50 50 H 1.08995 * 109.49573 * 176.93451 * 28 18 17 51 51 H 1.08993 * 109.63095 * 248.50911 * 29 15 13 52 52 H 1.09009 * 109.62464 * 9.08463 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7005 1.9580 0.8983 5 6 1.5268 2.1836 -1.2528 6 6 2.7411 3.0575 -1.6640 7 1 2.7262 3.2688 -2.7332 8 6 2.7850 4.3537 -0.8523 9 6 3.9284 2.1324 -1.2973 10 7 3.5090 1.4535 -0.0578 11 6 4.3354 0.9252 0.8666 12 8 3.8784 0.3204 1.8141 13 6 5.8146 1.0843 0.7247 14 8 6.2775 1.5853 -0.2789 15 7 6.6346 0.6715 1.7115 16 6 6.0926 0.1831 2.9886 17 6 6.7893 0.9304 4.1307 18 7 8.2447 0.7978 3.9823 19 6 8.9454 1.3526 5.1482 20 6 10.4050 0.9837 5.0794 21 1 10.7750 0.3956 4.2526 22 6 11.2680 1.3970 6.0721 23 7 10.8176 2.1136 7.0787 24 14 13.0770 0.9392 5.9873 25 1 13.3274 0.1356 4.7638 26 1 13.8989 2.1753 5.9439 27 1 13.4430 0.1432 7.1864 28 6 8.7130 1.4250 2.7392 29 6 8.0951 0.6979 1.5401 30 1 -0.3633 -1.0236 0.0909 31 1 -0.3634 0.5906 0.8410 32 1 -0.3633 0.4331 -0.9320 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.6672 2.8079 -1.0093 36 1 1.2781 1.4735 -2.0415 37 1 3.7041 4.8937 -1.0793 38 1 1.9262 4.9733 -1.1105 39 1 2.7556 4.1174 0.2114 40 1 4.8282 2.7218 -1.1213 41 1 4.1020 1.4035 -2.0890 42 1 6.2818 -0.8863 3.0816 43 1 5.0199 0.3727 3.0276 44 1 6.4807 0.5047 5.0854 45 1 6.5147 1.9848 4.0968 46 1 8.8447 2.4379 5.1500 47 1 8.5104 0.9457 6.0610 48 1 11.4247 2.4047 7.7769 49 1 8.4115 2.4723 2.7242 50 1 9.7995 1.3579 2.6848 51 1 8.4768 -0.3220 1.4938 52 1 8.3464 1.2279 0.6212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601461289.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:16 Heat of formation + Delta-G solvation = -46.317262 kcal Electronic energy + Delta-G solvation = -30721.253692 eV Core-core repulsion = 26721.313106 eV Total energy + Delta-G solvation = -3999.940585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.18174 -39.58832 -37.97829 -37.56934 -34.48866 -34.10071 -32.82611 -32.35916 -30.78139 -28.73171 -28.42992 -27.04440 -26.05720 -25.00170 -23.75092 -22.89632 -21.98648 -21.41343 -20.48595 -19.81965 -18.90544 -17.30242 -16.97105 -16.52356 -16.32906 -15.80266 -15.63962 -14.93633 -14.72045 -14.59734 -14.42060 -14.14361 -13.96605 -13.88168 -13.78534 -13.67497 -13.50828 -13.18353 -12.90317 -12.60210 -12.47604 -12.22240 -12.06090 -12.00593 -11.79170 -11.49549 -11.38288 -11.26133 -11.21457 -11.04312 -10.89984 -10.82097 -10.73158 -10.67351 -10.55945 -10.45386 -9.88254 -9.32656 -9.05854 -8.90260 -8.54583 -8.44910 -7.30710 -6.05325 -4.07115 1.41697 2.19240 3.17642 3.29758 3.34970 3.37385 3.41924 4.01908 4.11972 4.33234 4.40492 4.44623 4.68872 4.81643 4.85628 4.88412 5.02458 5.12403 5.16835 5.25775 5.30269 5.34771 5.38121 5.45928 5.50846 5.57130 5.62361 5.63319 5.66545 5.69964 5.73639 5.76347 5.82661 5.84076 5.88726 5.93168 5.98527 6.10454 6.24167 6.30028 6.44291 6.50362 6.62631 7.03066 7.23558 7.29423 7.35195 7.64714 7.76011 8.00501 8.03211 8.13647 8.49289 9.00453 9.57438 11.05560 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023175 B = 0.002390 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.921479 B =11711.686474 C =12123.668922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.137 3.863 4 H 0.079 0.921 5 C -0.123 4.123 6 C -0.110 4.110 7 H 0.092 0.908 8 C -0.144 4.144 9 C 0.100 3.900 10 N -0.586 5.586 11 C 0.524 3.476 12 O -0.510 6.510 13 C 0.505 3.495 14 O -0.531 6.531 15 N -0.571 5.571 16 C 0.075 3.925 17 C 0.041 3.959 18 N -0.537 5.537 19 C 0.193 3.807 20 C -0.508 4.508 21 H 0.064 0.936 22 C 0.055 3.945 23 N -0.898 5.898 24 Si 0.898 3.102 25 H -0.272 1.272 26 H -0.285 1.285 27 H -0.284 1.284 28 C 0.052 3.948 29 C 0.111 3.889 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.135 0.865 44 H 0.082 0.918 45 H 0.024 0.976 46 H -0.009 1.009 47 H 0.032 0.968 48 H 0.261 0.739 49 H 0.025 0.975 50 H 0.099 0.901 51 H 0.079 0.921 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.029 0.337 -18.373 27.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.034 3.966 4 H 0.097 0.903 5 C -0.161 4.161 6 C -0.129 4.129 7 H 0.111 0.889 8 C -0.201 4.201 9 C -0.023 4.023 10 N -0.320 5.320 11 C 0.309 3.691 12 O -0.387 6.387 13 C 0.287 3.713 14 O -0.409 6.409 15 N -0.303 5.303 16 C -0.047 4.047 17 C -0.089 4.089 18 N -0.262 5.262 19 C 0.068 3.932 20 C -0.547 4.547 21 H 0.083 0.917 22 C -0.146 4.146 23 N -0.537 5.537 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.211 1.211 27 H -0.210 1.210 28 C -0.077 4.077 29 C -0.010 4.010 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.152 0.848 44 H 0.101 0.899 45 H 0.042 0.958 46 H 0.009 0.991 47 H 0.050 0.950 48 H 0.071 0.929 49 H 0.043 0.957 50 H 0.117 0.883 51 H 0.097 0.903 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.778 -0.168 -18.174 27.605 hybrid contribution 0.936 0.628 0.289 1.164 sum -19.841 0.460 -17.885 26.716 Atomic orbital electron populations 1.21724 0.94974 1.02008 1.01813 1.21913 0.96231 0.95880 1.03494 1.21760 0.78768 0.96796 0.99248 0.90258 1.22822 0.97989 0.98508 0.96791 1.22436 0.94466 0.95094 1.00878 0.88930 1.21754 1.02117 0.96021 1.00209 1.22758 0.98653 0.95390 0.85455 1.48358 1.06464 1.55474 1.21715 1.19992 0.87524 0.79600 0.82019 1.90491 1.77117 1.40831 1.30266 1.19861 0.87158 0.80132 0.84124 1.90671 1.76936 1.43507 1.29814 1.48143 1.07201 1.60151 1.14817 1.23047 1.01935 0.99115 0.80555 1.22440 0.90406 0.97840 0.98182 1.62116 1.02266 1.57978 1.03866 1.19732 0.93756 0.92819 0.86868 1.21183 0.92383 1.33043 1.08079 0.91744 1.25000 0.99099 0.95197 0.95341 1.69967 1.35305 1.37058 1.11410 0.86438 0.84763 0.78122 0.78077 1.19621 1.21126 1.20997 1.22321 1.01456 0.94734 0.89164 1.22046 0.77200 1.02142 0.99659 0.92439 0.92523 0.92605 0.91823 0.90149 0.89771 0.90203 0.92055 0.92278 0.92559 0.87794 0.90967 0.90691 0.84826 0.89921 0.95787 0.99134 0.94993 0.92939 0.95713 0.88281 0.90296 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.57 37.16 0.36 -0.59 16 2 C -0.14 -1.18 5.34 -26.73 -0.14 -1.32 16 3 C 0.14 1.20 2.64 -66.95 -0.18 1.02 16 4 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.12 -0.75 4.99 -24.89 -0.12 -0.87 16 6 C -0.11 -0.73 3.72 -88.47 -0.33 -1.06 16 7 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 8 C -0.14 -1.01 9.24 37.16 0.34 -0.67 16 9 C 0.10 0.95 5.58 -2.53 -0.01 0.94 16 10 N -0.59 -6.53 3.05 -163.52 -0.50 -7.03 16 11 C 0.52 7.31 7.60 -11.58 -0.09 7.22 16 12 O -0.51 -7.68 12.06 5.50 0.07 -7.61 16 13 C 0.50 7.83 7.72 -11.58 -0.09 7.74 16 14 O -0.53 -8.62 13.24 5.50 0.07 -8.55 16 15 N -0.57 -9.25 3.01 -172.97 -0.52 -9.77 16 16 C 0.07 1.20 6.17 -3.60 -0.02 1.18 16 17 C 0.04 0.75 5.62 -3.70 -0.02 0.73 16 18 N -0.54 -11.54 4.62 -235.77 -1.09 -12.63 16 19 C 0.19 5.00 4.72 -4.98 -0.02 4.98 16 20 C -0.51 -14.09 8.41 -34.44 -0.29 -14.38 16 21 H 0.06 1.76 7.13 -52.49 -0.37 1.38 16 22 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 23 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 24 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 C 0.05 1.02 5.46 -3.70 -0.02 1.00 16 29 C 0.11 1.83 6.61 -3.60 -0.02 1.81 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.29 7.21 -51.93 -0.37 -0.09 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.89 6.79 -51.93 -0.35 0.53 16 35 H 0.08 0.41 8.05 -51.93 -0.42 -0.01 16 36 H 0.08 0.42 7.53 -51.93 -0.39 0.03 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.48 7.83 -51.93 -0.41 0.07 16 40 H 0.10 1.19 6.00 -51.93 -0.31 0.88 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.13 2.09 4.31 -54.92 -0.24 1.86 16 44 H 0.08 1.48 7.99 -51.93 -0.41 1.06 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 47 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 48 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.10 2.03 6.67 -51.93 -0.35 1.68 16 51 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 52 H 0.09 1.41 7.04 -51.92 -0.37 1.05 16 LS Contribution 397.60 15.07 5.99 5.99 Total: -1.00 -30.97 397.60 -10.06 -41.03 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -9.04 Total: -1.22 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -0.76 Total: 9.18 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -1.37 Total: -55.29 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.14 Total: -16.16 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.97 -10.06 -41.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601461289.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.283 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds