Wall clock time and date at job start Tue Mar 31 2020 19:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46798 * 2 1 4 4 H 1.08998 * 110.54053 * 307.61700 * 3 2 1 5 5 C 1.54890 * 110.48368 * 70.23102 * 3 2 1 6 6 C 1.54888 * 102.74832 * 156.61868 * 5 3 2 7 7 C 1.54269 * 104.19660 * 322.05769 * 6 5 3 8 8 C 1.53871 * 106.59788 * 23.60574 * 7 6 5 9 9 H 1.08994 * 110.03715 * 240.66863 * 8 7 6 10 10 N 1.46507 * 110.03146 * 119.28821 * 8 7 6 11 11 C 1.34777 * 119.99929 * 86.72602 * 10 8 7 12 12 O 1.21345 * 120.00116 * 359.73310 * 11 10 8 13 13 C 1.49449 * 119.99649 * 179.72355 * 11 10 8 14 14 O 1.21349 * 120.00370 * 6.71520 * 13 11 10 15 15 N 1.34781 * 119.99727 * 186.70672 * 13 11 10 16 16 C 1.47073 * 120.87914 * 7.83867 * 15 13 11 17 17 C 1.53700 * 108.27588 * 128.75318 * 16 15 13 18 18 N 1.46896 * 109.25565 * 54.08267 * 17 16 15 19 19 C 1.46905 * 111.00075 * 172.60826 * 18 17 16 20 20 C 1.50693 * 109.47189 * 294.30002 * 19 18 17 21 21 H 1.08006 * 119.99860 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00552 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00459 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99355 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47447 * 89.99913 * 24 22 20 26 26 H 1.48501 * 109.46983 * 209.99722 * 24 22 20 27 27 H 1.48501 * 109.47474 * 329.99577 * 24 22 20 28 28 C 1.46902 * 111.26940 * 296.75583 * 18 17 16 29 29 C 1.47080 * 120.87867 * 188.11578 * 15 13 11 30 30 H 1.08992 * 109.47491 * 59.99815 * 1 2 3 31 31 H 1.09004 * 109.47234 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46853 * 299.99488 * 1 2 3 33 33 H 1.08999 * 109.46853 * 240.00512 * 2 1 3 34 34 H 1.08992 * 109.47491 * 120.00185 * 2 1 3 35 35 H 1.08998 * 110.75913 * 38.30154 * 5 3 2 36 36 H 1.09000 * 110.75135 * 274.93180 * 5 3 2 37 37 H 1.08999 * 110.48471 * 203.37621 * 6 5 3 38 38 H 1.09005 * 110.60068 * 80.79160 * 6 5 3 39 39 H 1.09003 * 110.02882 * 264.32420 * 7 6 5 40 40 H 1.09000 * 110.03353 * 142.89262 * 7 6 5 41 41 H 0.96998 * 119.99872 * 266.45800 * 10 8 7 42 42 H 1.09002 * 109.63299 * 248.51902 * 16 15 13 43 43 H 1.09004 * 109.63465 * 9.10023 * 16 15 13 44 44 H 1.09000 * 109.64968 * 294.07740 * 17 16 15 45 45 H 1.09001 * 109.44505 * 173.95900 * 17 16 15 46 46 H 1.09004 * 109.47102 * 54.30040 * 19 18 17 47 47 H 1.08999 * 109.47416 * 174.29910 * 19 18 17 48 48 H 0.97002 * 120.00243 * 180.02562 * 23 22 20 49 49 H 1.09005 * 109.49234 * 303.14935 * 28 18 17 50 50 H 1.08993 * 109.51543 * 183.08141 * 28 18 17 51 51 H 1.08996 * 109.62976 * 350.89603 * 29 15 13 52 52 H 1.09001 * 109.62708 * 111.28689 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5800 2.0108 -0.8085 5 6 1.7579 2.1171 1.3654 6 6 2.8152 3.2480 1.4129 7 6 4.0701 2.6197 0.7723 8 6 3.5772 1.4717 -0.1260 9 1 3.9984 0.5253 0.2128 10 7 3.9620 1.7224 -1.5172 11 6 5.1707 1.3273 -1.9637 12 8 5.9422 0.7683 -1.2121 13 6 5.5608 1.5775 -3.3845 14 8 4.8431 2.2420 -4.1028 15 7 6.7099 1.0653 -3.8681 16 6 7.5082 0.1198 -3.0732 17 6 7.8026 -1.1127 -3.9431 18 7 8.4247 -0.6800 -5.2015 19 6 8.8819 -1.8342 -5.9869 20 6 9.9949 -2.5339 -5.2503 21 1 10.3295 -2.1584 -4.2945 22 6 10.5861 -3.6533 -5.7964 23 7 11.5578 -4.2636 -5.1538 24 14 10.0079 -4.3023 -7.4499 25 1 10.7939 -3.6625 -8.5352 26 1 10.2020 -5.7737 -7.4995 27 1 8.5679 -3.9867 -7.6295 28 6 7.5112 0.1617 -5.9858 29 6 7.2017 1.4417 -5.2021 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.9090 1.4124 2.1831 36 1 0.7494 2.5299 1.3913 37 1 3.0177 3.5379 2.4439 38 1 2.4819 4.1093 0.8339 39 1 4.7299 2.2302 1.5476 40 1 4.5956 3.3633 0.1732 41 1 3.3453 2.1693 -2.1180 42 1 8.4438 0.5921 -2.7735 43 1 6.9466 -0.1805 -2.1886 44 1 6.8731 -1.6393 -4.1591 45 1 8.4826 -1.7782 -3.4112 46 1 8.0521 -2.5258 -6.1333 47 1 9.2459 -1.4931 -6.9561 48 1 11.9740 -5.0510 -5.5382 49 1 6.5856 -0.3827 -6.1733 50 1 7.9795 0.4208 -6.9353 51 1 6.4373 2.0158 -5.7256 52 1 8.1064 2.0415 -5.1030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602268770.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:29 Heat of formation + Delta-G solvation = -60.355015 kcal Electronic energy + Delta-G solvation = -30095.014096 eV Core-core repulsion = 26094.464788 eV Total energy + Delta-G solvation = -4000.549308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.03847 -39.57760 -38.21640 -37.65486 -34.87655 -33.98491 -33.34639 -32.37577 -30.85484 -28.94074 -28.36428 -28.03759 -26.17300 -24.23842 -23.35686 -22.82955 -21.62647 -21.08687 -20.53243 -20.21798 -19.27567 -17.54918 -17.20464 -16.81945 -16.47775 -15.98436 -15.50301 -15.36215 -14.95353 -14.70114 -14.58568 -14.27677 -14.20950 -14.01741 -13.86900 -13.54414 -13.46952 -13.44419 -12.87466 -12.46899 -12.41655 -12.32748 -12.25628 -11.84485 -11.59939 -11.55319 -11.43485 -11.27137 -11.17393 -11.07417 -10.94338 -10.89561 -10.83282 -10.76041 -10.56215 -10.35032 -9.91728 -9.48370 -9.34502 -9.09702 -8.63654 -8.59100 -7.45921 -6.07840 -4.05725 1.37443 2.27531 3.14738 3.26510 3.34164 3.35863 3.44368 3.99823 4.16459 4.27650 4.38174 4.39466 4.67877 4.73559 4.85216 4.91600 5.02754 5.10105 5.16172 5.19761 5.22301 5.23831 5.26961 5.35439 5.39595 5.50227 5.53400 5.58050 5.63865 5.65492 5.69476 5.72163 5.78525 5.83341 5.85887 5.88192 5.97396 6.03305 6.11760 6.23439 6.42545 6.47323 6.55726 6.80719 6.91791 6.95317 7.30973 7.53445 7.67387 7.81577 7.95278 7.96157 8.61058 9.00055 9.53503 11.05024 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017574 B = 0.002324 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.878670 B =12042.725341 C =12422.885709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.098 4.098 4 H 0.082 0.918 5 C -0.117 4.117 6 C -0.125 4.125 7 C -0.136 4.136 8 C 0.141 3.859 9 H 0.098 0.902 10 N -0.696 5.696 11 C 0.509 3.491 12 O -0.505 6.505 13 C 0.503 3.497 14 O -0.537 6.537 15 N -0.573 5.573 16 C 0.077 3.923 17 C 0.050 3.950 18 N -0.528 5.528 19 C 0.162 3.838 20 C -0.511 4.511 21 H 0.082 0.918 22 C 0.069 3.931 23 N -0.898 5.898 24 Si 0.875 3.125 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.269 1.269 28 C 0.039 3.961 29 C 0.114 3.886 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.410 0.590 42 H 0.078 0.922 43 H 0.132 0.868 44 H 0.023 0.977 45 H 0.104 0.896 46 H -0.011 1.011 47 H 0.026 0.974 48 H 0.264 0.736 49 H 0.028 0.972 50 H 0.084 0.916 51 H 0.091 0.909 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.886 14.177 11.666 28.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.117 4.117 4 H 0.101 0.899 5 C -0.154 4.154 6 C -0.163 4.163 7 C -0.175 4.175 8 C 0.037 3.963 9 H 0.116 0.884 10 N -0.349 5.349 11 C 0.291 3.709 12 O -0.381 6.381 13 C 0.285 3.715 14 O -0.415 6.415 15 N -0.305 5.305 16 C -0.044 4.044 17 C -0.079 4.079 18 N -0.253 5.253 19 C 0.036 3.964 20 C -0.549 4.549 21 H 0.100 0.900 22 C -0.133 4.133 23 N -0.537 5.537 24 Si 0.702 3.298 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.194 1.194 28 C -0.090 4.090 29 C -0.008 4.008 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.247 0.753 42 H 0.096 0.904 43 H 0.149 0.851 44 H 0.042 0.958 45 H 0.122 0.878 46 H 0.006 0.994 47 H 0.044 0.956 48 H 0.074 0.926 49 H 0.046 0.954 50 H 0.102 0.898 51 H 0.109 0.891 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.145 14.230 11.922 28.138 hybrid contribution -0.985 -0.771 -1.560 2.000 sum -22.130 13.459 10.361 27.897 Atomic orbital electron populations 1.21771 0.95523 1.01772 1.01824 1.21589 0.96157 0.95342 1.02561 1.22328 0.93424 0.97117 0.98822 0.89931 1.22543 0.99072 0.97471 0.96354 1.22363 0.95019 0.97959 1.00915 1.22589 0.98036 0.97640 0.99207 1.21871 0.94545 0.99772 0.80130 0.88446 1.45979 1.16617 1.59442 1.12898 1.20286 0.82612 0.79254 0.88736 1.90567 1.49898 1.40234 1.57440 1.19997 0.82230 0.81400 0.87837 1.90717 1.51170 1.40607 1.59021 1.48169 1.21284 1.43058 1.17994 1.23142 0.96698 0.89071 0.95475 1.22514 0.97834 0.95532 0.92027 1.61938 1.36107 1.22198 1.05009 1.20180 0.95300 0.87080 0.93809 1.21013 1.16405 1.10116 1.07405 0.89992 1.24893 0.94722 0.96408 0.97240 1.69888 1.24602 1.20530 1.38712 0.86872 0.79628 0.78311 0.84991 1.20117 1.21186 1.19354 1.22432 0.95480 0.94012 0.97091 1.21913 0.99724 0.97374 0.81766 0.92752 0.92677 0.92583 0.91712 0.91489 0.90910 0.91096 0.91368 0.91517 0.90723 0.91118 0.75310 0.90375 0.85082 0.95844 0.87760 0.99376 0.95638 0.92616 0.95386 0.89817 0.89098 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.79 37.16 0.36 -0.48 16 2 C -0.12 -0.77 5.28 -26.73 -0.14 -0.91 16 3 C -0.10 -0.61 2.55 -88.96 -0.23 -0.84 16 4 H 0.08 0.49 7.73 -51.93 -0.40 0.09 16 5 C -0.12 -0.61 5.67 -24.74 -0.14 -0.75 16 6 C -0.12 -0.73 6.83 -25.07 -0.17 -0.90 16 7 C -0.14 -1.06 6.59 -25.61 -0.17 -1.23 16 8 C 0.14 1.17 2.80 -66.81 -0.19 0.99 16 9 H 0.10 0.95 7.30 -51.93 -0.38 0.57 16 10 N -0.70 -6.90 4.98 -53.15 -0.26 -7.16 16 11 C 0.51 6.67 7.73 -11.59 -0.09 6.58 16 12 O -0.51 -7.49 12.87 5.50 0.07 -7.42 16 13 C 0.50 7.45 7.75 -11.58 -0.09 7.36 16 14 O -0.54 -8.51 15.96 5.50 0.09 -8.42 16 15 N -0.57 -8.91 3.00 -172.69 -0.52 -9.43 16 16 C 0.08 1.26 6.14 -3.37 -0.02 1.24 16 17 C 0.05 0.95 5.47 -3.46 -0.02 0.93 16 18 N -0.53 -10.87 4.62 -235.46 -1.09 -11.95 16 19 C 0.16 3.89 3.79 -4.98 -0.02 3.87 16 20 C -0.51 -14.28 8.96 -34.44 -0.31 -14.59 16 21 H 0.08 2.48 7.37 -52.48 -0.39 2.09 16 22 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 23 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 24 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 28 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 29 C 0.11 1.71 6.61 -3.60 -0.02 1.69 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.27 7.55 -51.93 -0.39 -0.12 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.42 8.02 -51.93 -0.42 0.01 16 35 H 0.07 0.37 7.97 -51.93 -0.41 -0.04 16 36 H 0.07 0.32 8.06 -51.93 -0.42 -0.10 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.63 7.92 -51.93 -0.41 0.22 16 41 H 0.41 3.63 7.83 -40.82 -0.32 3.31 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.13 2.10 4.44 -54.23 -0.24 1.86 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 2.20 6.67 -51.93 -0.35 1.85 16 46 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 47 H 0.03 0.61 7.40 -51.93 -0.38 0.22 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.08 1.32 7.99 -51.93 -0.41 0.91 16 51 H 0.09 1.28 7.05 -51.93 -0.37 0.91 16 52 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 400.87 15.07 6.04 6.04 Total: -1.00 -31.50 400.87 -9.99 -41.48 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -9.06 Total: 1.18 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -1.36 Total: 5.49 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -1.10 Total: -55.03 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.16 Total: -15.84 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.50 -9.99 -41.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602268770.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.872 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds