Wall clock time and date at job start Tue Mar 31 2020 19:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46798 * 2 1 4 4 H 1.08998 * 110.54053 * 307.61700 * 3 2 1 5 5 C 1.54890 * 110.48368 * 70.23102 * 3 2 1 6 6 C 1.54888 * 102.74832 * 156.61868 * 5 3 2 7 7 C 1.54269 * 104.19660 * 322.05769 * 6 5 3 8 8 C 1.53871 * 106.59788 * 23.60574 * 7 6 5 9 9 H 1.08994 * 110.03715 * 240.66863 * 8 7 6 10 10 N 1.46507 * 110.03146 * 119.28821 * 8 7 6 11 11 C 1.34777 * 119.99929 * 86.72602 * 10 8 7 12 12 O 1.21345 * 120.00116 * 359.73310 * 11 10 8 13 13 C 1.49449 * 119.99649 * 179.72355 * 11 10 8 14 14 O 1.21349 * 120.00370 * 6.71520 * 13 11 10 15 15 N 1.34781 * 119.99727 * 186.70672 * 13 11 10 16 16 C 1.47073 * 120.87914 * 7.83867 * 15 13 11 17 17 C 1.53700 * 108.27588 * 128.75318 * 16 15 13 18 18 N 1.46896 * 109.25565 * 54.08267 * 17 16 15 19 19 C 1.46905 * 111.00075 * 172.60826 * 18 17 16 20 20 C 1.50693 * 109.47189 * 294.30002 * 19 18 17 21 21 H 1.08006 * 119.99860 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00552 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00459 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99355 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47447 * 89.99913 * 24 22 20 26 26 H 1.48501 * 109.46983 * 209.99722 * 24 22 20 27 27 H 1.48501 * 109.47474 * 329.99577 * 24 22 20 28 28 C 1.46902 * 111.26940 * 296.75583 * 18 17 16 29 29 C 1.47080 * 120.87867 * 188.11578 * 15 13 11 30 30 H 1.08992 * 109.47491 * 59.99815 * 1 2 3 31 31 H 1.09004 * 109.47234 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46853 * 299.99488 * 1 2 3 33 33 H 1.08999 * 109.46853 * 240.00512 * 2 1 3 34 34 H 1.08992 * 109.47491 * 120.00185 * 2 1 3 35 35 H 1.08998 * 110.75913 * 38.30154 * 5 3 2 36 36 H 1.09000 * 110.75135 * 274.93180 * 5 3 2 37 37 H 1.08999 * 110.48471 * 203.37621 * 6 5 3 38 38 H 1.09005 * 110.60068 * 80.79160 * 6 5 3 39 39 H 1.09003 * 110.02882 * 264.32420 * 7 6 5 40 40 H 1.09000 * 110.03353 * 142.89262 * 7 6 5 41 41 H 0.96998 * 119.99872 * 266.45800 * 10 8 7 42 42 H 1.09002 * 109.63299 * 248.51902 * 16 15 13 43 43 H 1.09004 * 109.63465 * 9.10023 * 16 15 13 44 44 H 1.09000 * 109.64968 * 294.07740 * 17 16 15 45 45 H 1.09001 * 109.44505 * 173.95900 * 17 16 15 46 46 H 1.09004 * 109.47102 * 54.30040 * 19 18 17 47 47 H 1.08999 * 109.47416 * 174.29910 * 19 18 17 48 48 H 0.97002 * 120.00243 * 180.02562 * 23 22 20 49 49 H 1.09005 * 109.49234 * 303.14935 * 28 18 17 50 50 H 1.08993 * 109.51543 * 183.08141 * 28 18 17 51 51 H 1.08996 * 109.62976 * 350.89603 * 29 15 13 52 52 H 1.09001 * 109.62708 * 111.28689 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5800 2.0108 -0.8085 5 6 1.7579 2.1171 1.3654 6 6 2.8152 3.2480 1.4129 7 6 4.0701 2.6197 0.7723 8 6 3.5772 1.4717 -0.1260 9 1 3.9984 0.5253 0.2128 10 7 3.9620 1.7224 -1.5172 11 6 5.1707 1.3273 -1.9637 12 8 5.9422 0.7683 -1.2121 13 6 5.5608 1.5775 -3.3845 14 8 4.8431 2.2420 -4.1028 15 7 6.7099 1.0653 -3.8681 16 6 7.5082 0.1198 -3.0732 17 6 7.8026 -1.1127 -3.9431 18 7 8.4247 -0.6800 -5.2015 19 6 8.8819 -1.8342 -5.9869 20 6 9.9949 -2.5339 -5.2503 21 1 10.3295 -2.1584 -4.2945 22 6 10.5861 -3.6533 -5.7964 23 7 11.5578 -4.2636 -5.1538 24 14 10.0079 -4.3023 -7.4499 25 1 10.7939 -3.6625 -8.5352 26 1 10.2020 -5.7737 -7.4995 27 1 8.5679 -3.9867 -7.6295 28 6 7.5112 0.1617 -5.9858 29 6 7.2017 1.4417 -5.2021 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.9090 1.4124 2.1831 36 1 0.7494 2.5299 1.3913 37 1 3.0177 3.5379 2.4439 38 1 2.4819 4.1093 0.8339 39 1 4.7299 2.2302 1.5476 40 1 4.5956 3.3633 0.1732 41 1 3.3453 2.1693 -2.1180 42 1 8.4438 0.5921 -2.7735 43 1 6.9466 -0.1805 -2.1886 44 1 6.8731 -1.6393 -4.1591 45 1 8.4826 -1.7782 -3.4112 46 1 8.0521 -2.5258 -6.1333 47 1 9.2459 -1.4931 -6.9561 48 1 11.9740 -5.0510 -5.5382 49 1 6.5856 -0.3827 -6.1733 50 1 7.9795 0.4208 -6.9353 51 1 6.4373 2.0158 -5.7256 52 1 8.1064 2.0415 -5.1030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602268770.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:28 Heat of formation + Delta-G solvation = -81.761732 kcal Electronic energy + Delta-G solvation = -30095.942361 eV Core-core repulsion = 26094.464788 eV Total energy + Delta-G solvation = -4001.477573 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.13408 -40.52327 -39.23076 -38.96582 -36.24615 -35.01061 -34.38661 -33.91513 -32.23783 -30.62935 -29.20189 -28.54969 -27.69256 -25.46218 -24.72131 -23.55802 -23.09351 -22.21435 -21.43233 -21.04542 -20.35091 -18.97061 -18.67711 -18.22239 -17.51928 -17.04170 -16.56329 -16.44026 -16.15020 -16.05870 -15.73639 -15.53591 -15.44465 -15.23858 -15.12781 -14.61203 -14.48265 -14.25319 -14.08208 -13.96234 -13.72754 -13.24853 -13.03194 -12.97837 -12.80461 -12.79050 -12.50106 -12.43504 -12.26877 -12.18993 -11.98209 -11.93186 -11.86367 -11.76675 -11.59645 -11.44447 -11.43618 -11.32762 -10.78367 -10.46368 -10.18267 -9.95211 -9.10849 -8.28265 -6.31889 0.24934 1.21134 1.34903 1.36053 1.46286 2.01869 2.33464 2.35056 3.03800 3.14237 3.19608 3.46383 3.61764 3.84363 3.89407 3.97778 4.15336 4.18312 4.25273 4.33620 4.35641 4.39012 4.46884 4.53158 4.56259 4.62413 4.68953 4.70483 4.75298 4.77948 4.79877 4.88091 4.92719 4.97741 5.03833 5.05605 5.11536 5.16558 5.21744 5.23850 5.24483 5.29905 5.41675 5.47247 5.51455 5.55191 5.84884 5.98036 6.15603 6.25943 6.58741 6.60168 6.74381 6.86843 7.31576 8.88020 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017574 B = 0.002324 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.878670 B =12042.725341 C =12422.885709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.091 4.091 4 H 0.091 0.909 5 C -0.111 4.111 6 C -0.120 4.120 7 C -0.136 4.136 8 C 0.137 3.863 9 H 0.082 0.918 10 N -0.679 5.679 11 C 0.509 3.491 12 O -0.527 6.527 13 C 0.505 3.495 14 O -0.544 6.544 15 N -0.579 5.579 16 C 0.094 3.906 17 C 0.054 3.946 18 N -0.541 5.541 19 C 0.172 3.828 20 C -0.516 4.516 21 H 0.041 0.959 22 C 0.009 3.991 23 N -0.946 5.946 24 Si 0.946 3.054 25 H -0.263 1.263 26 H -0.283 1.283 27 H -0.254 1.254 28 C 0.040 3.960 29 C 0.119 3.881 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.418 0.582 42 H 0.074 0.926 43 H 0.138 0.862 44 H 0.022 0.978 45 H 0.074 0.926 46 H -0.015 1.015 47 H 0.035 0.965 48 H 0.267 0.733 49 H 0.027 0.973 50 H 0.100 0.900 51 H 0.106 0.894 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.472 15.576 10.934 31.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.110 4.110 4 H 0.109 0.891 5 C -0.149 4.149 6 C -0.157 4.157 7 C -0.174 4.174 8 C 0.034 3.966 9 H 0.100 0.900 10 N -0.331 5.331 11 C 0.291 3.709 12 O -0.406 6.406 13 C 0.288 3.712 14 O -0.423 6.423 15 N -0.312 5.312 16 C -0.027 4.027 17 C -0.074 4.074 18 N -0.265 5.265 19 C 0.045 3.955 20 C -0.555 4.555 21 H 0.060 0.940 22 C -0.188 4.188 23 N -0.587 5.587 24 Si 0.770 3.230 25 H -0.188 1.188 26 H -0.209 1.209 27 H -0.178 1.178 28 C -0.089 4.089 29 C -0.003 4.003 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.256 0.744 42 H 0.092 0.908 43 H 0.155 0.845 44 H 0.040 0.960 45 H 0.093 0.907 46 H 0.003 0.997 47 H 0.053 0.947 48 H 0.076 0.924 49 H 0.045 0.955 50 H 0.118 0.882 51 H 0.124 0.876 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.782 15.673 11.196 30.603 hybrid contribution -0.196 -1.148 -1.234 1.697 sum -23.978 14.525 9.962 29.751 Atomic orbital electron populations 1.21752 0.94569 1.01901 1.02418 1.21576 0.96948 0.95286 1.01822 1.22306 0.91482 0.97257 0.99932 0.89123 1.22538 0.99673 0.97144 0.95517 1.22345 0.93950 0.98153 1.01268 1.22564 0.98963 0.97091 0.98821 1.22041 0.96179 0.99367 0.79055 0.89968 1.45982 1.15443 1.57972 1.13704 1.20062 0.83411 0.79566 0.87902 1.90552 1.50759 1.41661 1.57585 1.20243 0.81641 0.80832 0.88451 1.90709 1.51212 1.40855 1.59485 1.48188 1.21569 1.43150 1.18253 1.22903 0.96823 0.88035 0.94970 1.22413 0.96698 0.96531 0.91798 1.61848 1.38040 1.21190 1.05471 1.19948 0.93740 0.87928 0.93887 1.21234 1.17425 1.10520 1.06289 0.94028 1.25820 0.94761 0.96696 1.01571 1.70043 1.26312 1.21363 1.40956 0.85729 0.79892 0.77598 0.79777 1.18808 1.20878 1.17790 1.22531 0.94686 0.94012 0.97628 1.21924 1.00599 0.96398 0.81365 0.92594 0.92851 0.91513 0.93232 0.91561 0.90665 0.89541 0.90544 0.90929 0.91323 0.92254 0.74439 0.90782 0.84518 0.96012 0.90729 0.99732 0.94731 0.92417 0.95468 0.88224 0.87559 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.79 71.98 0.70 -0.69 16 2 C -0.12 -1.38 5.28 30.60 0.16 -1.22 16 3 C -0.09 -0.97 2.55 -9.72 -0.02 -1.00 16 4 H 0.09 0.86 7.73 -2.39 -0.02 0.84 16 5 C -0.11 -0.89 5.67 31.89 0.18 -0.71 16 6 C -0.12 -1.14 6.83 31.67 0.22 -0.92 16 7 C -0.14 -1.98 6.59 31.32 0.21 -1.78 16 8 C 0.14 2.16 2.80 45.71 0.13 2.29 16 9 H 0.08 1.59 7.30 -2.39 -0.02 1.57 16 10 N -0.68 -12.75 4.98 -440.43 -2.19 -14.95 16 11 C 0.51 13.02 7.73 87.27 0.67 13.69 16 12 O -0.53 -15.62 12.87 -3.23 -0.04 -15.66 16 13 C 0.51 14.36 7.75 87.27 0.68 15.04 16 14 O -0.54 -16.23 15.96 -3.24 -0.05 -16.29 16 15 N -0.58 -17.45 3.00 -818.62 -2.46 -19.90 16 16 C 0.09 3.10 6.14 86.51 0.53 3.63 16 17 C 0.05 2.13 5.47 86.54 0.47 2.61 16 18 N -0.54 -22.18 4.62 -898.86 -4.15 -26.33 16 19 C 0.17 8.17 3.79 85.55 0.32 8.50 16 20 C -0.52 -29.64 8.96 25.60 0.23 -29.41 16 21 H 0.04 2.66 7.37 -2.91 -0.02 2.63 16 22 C 0.01 0.52 5.47 84.65 0.46 0.99 16 23 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 24 Si 0.95 43.86 27.47 68.60 1.88 45.74 16 25 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 27 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 28 C 0.04 1.29 5.62 86.38 0.49 1.78 16 29 C 0.12 3.34 6.61 86.35 0.57 3.91 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.49 7.55 -2.39 -0.02 0.47 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.78 8.02 -2.39 -0.02 0.76 16 35 H 0.07 0.60 7.97 -2.39 -0.02 0.58 16 36 H 0.09 0.49 8.06 -2.39 -0.02 0.47 16 37 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.01 7.92 -2.39 -0.02 0.99 16 41 H 0.42 6.72 7.83 -92.71 -0.73 5.99 16 42 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.14 4.43 4.44 -38.94 -0.17 4.26 16 44 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 3.34 6.67 -2.39 -0.02 3.32 16 46 H -0.01 -0.72 7.18 -2.38 -0.02 -0.74 16 47 H 0.03 1.59 7.40 -2.39 -0.02 1.57 16 48 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 49 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 50 H 0.10 2.90 7.99 -2.39 -0.02 2.88 16 51 H 0.11 2.71 7.05 -2.39 -0.02 2.69 16 52 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -68.64 400.87 -0.75 -69.39 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.04 Total: 19.98 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 6.00 Total: 16.71 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -8.51 Total: -119.87 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.09 Total: -31.95 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.74 kcal Total: -68.64 -0.75 -69.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602268770.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.374 kcal (2) G-P(sol) polarization free energy of solvation -68.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds