Wall clock time and date at job start Tue Mar 31 2020 19:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47021 * 2 1 4 4 H 1.08998 * 110.81767 * 51.66692 * 3 2 1 5 5 C 1.54889 * 110.75665 * 288.32570 * 3 2 1 6 6 C 1.54258 * 104.19770 * 203.74279 * 5 3 2 7 7 C 1.53883 * 106.59789 * 23.61489 * 6 5 3 8 8 C 1.54265 * 106.59676 * 359.97438 * 7 6 5 9 9 H 1.08996 * 110.48787 * 95.20575 * 8 7 6 10 10 N 1.46502 * 110.48657 * 217.71700 * 8 7 6 11 11 C 1.34780 * 119.99744 * 273.54488 * 10 8 7 12 12 O 1.21350 * 119.99864 * 0.02562 * 11 10 8 13 13 C 1.49451 * 119.99939 * 179.97438 * 11 10 8 14 14 O 1.21338 * 120.00067 * 6.47808 * 13 11 10 15 15 N 1.34781 * 119.99654 * 186.48286 * 13 11 10 16 16 C 1.47081 * 120.87841 * 178.42129 * 15 13 11 17 17 C 1.53237 * 108.51877 * 231.20495 * 16 15 13 18 18 N 1.46897 * 109.34255 * 306.16858 * 17 16 15 19 19 C 1.46899 * 110.99831 * 187.25499 * 18 17 16 20 20 C 1.50704 * 109.46688 * 170.00323 * 19 18 17 21 21 H 1.07991 * 120.00484 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99790 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00074 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00026 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47269 * 89.99905 * 24 22 20 26 26 H 1.48503 * 109.47170 * 209.99960 * 24 22 20 27 27 H 1.48502 * 109.47356 * 330.00137 * 24 22 20 28 28 C 1.46902 * 111.26756 * 63.10559 * 18 17 16 29 29 C 1.47078 * 120.88403 * 358.44619 * 15 13 11 30 30 H 1.08998 * 109.46755 * 60.00025 * 1 2 3 31 31 H 1.09002 * 109.46997 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46758 * 299.99899 * 1 2 3 33 33 H 1.08998 * 109.46932 * 239.99579 * 2 1 3 34 34 H 1.08998 * 109.46755 * 119.99975 * 2 1 3 35 35 H 1.09001 * 110.48430 * 85.06141 * 5 3 2 36 36 H 1.09001 * 110.59650 * 322.48346 * 5 3 2 37 37 H 1.08993 * 110.03432 * 264.32940 * 6 5 3 38 38 H 1.09003 * 110.03349 * 142.89111 * 6 5 3 39 39 H 1.09002 * 110.02671 * 240.71762 * 7 6 5 40 40 H 1.08989 * 110.07519 * 119.30473 * 7 6 5 41 41 H 0.96993 * 120.00378 * 93.54685 * 10 8 7 42 42 H 1.09000 * 109.62839 * 111.49735 * 16 15 13 43 43 H 1.09001 * 109.78712 * 351.01043 * 16 15 13 44 44 H 1.09001 * 109.49105 * 186.20771 * 17 16 15 45 45 H 1.09003 * 109.51420 * 66.14495 * 17 16 15 46 46 H 1.09003 * 109.47550 * 289.99825 * 19 18 17 47 47 H 1.08996 * 109.47224 * 50.00348 * 19 18 17 48 48 H 0.96999 * 120.00404 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.49127 * 56.85510 * 28 18 17 50 50 H 1.08997 * 109.49244 * 176.93281 * 28 18 17 51 51 H 1.09004 * 109.62289 * 248.50417 * 29 15 13 52 52 H 1.08998 * 109.62941 * 8.88409 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5734 2.0184 0.7992 5 6 1.7936 2.1119 -1.3749 6 6 2.8428 3.2408 -1.4395 7 6 3.9809 2.8385 -0.4851 8 6 3.5831 1.4793 0.1267 9 1 4.0331 0.6614 -0.4359 10 7 3.9842 1.4135 1.5342 11 6 5.2265 1.0068 1.8625 12 8 6.0129 0.6955 0.9923 13 6 5.6359 0.9401 3.2983 14 8 4.8177 1.1379 4.1723 15 7 6.9139 0.6604 3.6223 16 6 7.3456 0.6239 5.0279 17 6 8.5884 1.5077 5.1784 18 7 9.6052 1.0873 4.2052 19 6 10.8733 1.7939 4.4303 20 6 11.9533 1.1690 3.5852 21 1 11.7211 0.3307 2.9453 22 6 13.2383 1.6670 3.6299 23 7 14.1809 1.1214 2.8928 24 14 13.6402 3.1166 4.7373 25 1 14.0522 2.6188 6.0744 26 1 14.7481 3.9042 4.1393 27 1 12.4398 3.9793 4.8788 28 6 9.1342 1.2773 2.8267 29 6 7.9139 0.3841 2.5798 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.7859 2.5243 -1.4232 36 1 1.9515 1.3975 -2.1829 37 1 2.3990 4.1821 -1.1155 38 1 3.2248 3.3379 -2.4558 39 1 4.0891 3.5845 0.3022 40 1 4.9153 2.7405 -1.0374 41 1 3.3558 1.6626 2.2297 42 1 7.5886 -0.4006 5.3098 43 1 6.5485 1.0007 5.6686 44 1 8.9869 1.4060 6.1878 45 1 8.3193 2.5483 4.9968 46 1 10.7586 2.8426 4.1562 47 1 11.1478 1.7213 5.4827 48 1 15.0850 1.4715 2.9245 49 1 8.8572 2.3209 2.6776 50 1 9.9287 1.0084 2.1306 51 1 8.2115 -0.6635 2.6264 52 1 7.4901 0.6010 1.5993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602268773.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:37 Heat of formation + Delta-G solvation = -78.889546 kcal Electronic energy + Delta-G solvation = -30111.747289 eV Core-core repulsion = 26110.394264 eV Total energy + Delta-G solvation = -4001.353025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.15379 -40.49497 -39.22935 -38.99884 -36.25119 -35.01752 -34.38016 -33.97843 -32.23809 -30.63590 -29.20242 -28.55863 -27.68918 -25.45363 -24.71076 -23.56994 -23.10249 -22.16047 -21.52304 -20.99426 -20.38599 -18.97446 -18.69686 -18.24943 -17.42763 -17.13349 -16.57337 -16.45864 -16.14712 -16.06309 -15.74169 -15.55278 -15.39561 -15.33724 -15.06929 -14.52518 -14.44467 -14.30176 -14.14498 -13.87100 -13.79916 -13.34994 -13.15415 -13.02163 -12.81228 -12.74818 -12.49609 -12.42779 -12.26378 -12.13615 -12.06798 -11.93467 -11.86721 -11.74955 -11.57033 -11.43919 -11.32718 -11.31125 -10.78557 -10.30368 -10.23418 -9.94731 -9.10733 -8.28419 -6.31977 0.24428 1.19884 1.34500 1.35735 1.45981 2.02622 2.33173 2.34767 3.03578 3.14067 3.17334 3.47126 3.60996 3.83414 3.90521 3.99309 4.16132 4.19551 4.26133 4.34300 4.35681 4.38909 4.44837 4.53768 4.54893 4.62058 4.68122 4.68453 4.75318 4.78643 4.79327 4.88847 4.95497 4.97715 5.05590 5.05897 5.13266 5.20268 5.22663 5.22802 5.26237 5.31192 5.42055 5.48704 5.52815 5.56468 5.85701 5.98152 6.15719 6.26422 6.58950 6.61373 6.74170 6.86951 7.31338 8.87862 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019669 B = 0.002326 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.234356 B =12032.948809 C =12720.096885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.089 4.089 4 H 0.093 0.907 5 C -0.111 4.111 6 C -0.119 4.119 7 C -0.139 4.139 8 C 0.137 3.863 9 H 0.087 0.913 10 N -0.676 5.676 11 C 0.512 3.488 12 O -0.524 6.524 13 C 0.505 3.495 14 O -0.544 6.544 15 N -0.576 5.576 16 C 0.118 3.882 17 C 0.040 3.960 18 N -0.541 5.541 19 C 0.172 3.828 20 C -0.516 4.516 21 H 0.041 0.959 22 C 0.008 3.992 23 N -0.946 5.946 24 Si 0.947 3.053 25 H -0.263 1.263 26 H -0.283 1.283 27 H -0.254 1.254 28 C 0.057 3.943 29 C 0.072 3.928 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.419 0.581 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.027 0.973 46 H -0.015 1.015 47 H 0.034 0.966 48 H 0.267 0.733 49 H 0.020 0.980 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.638 2.925 -5.331 31.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.108 4.108 4 H 0.111 0.889 5 C -0.149 4.149 6 C -0.157 4.157 7 C -0.177 4.177 8 C 0.034 3.966 9 H 0.105 0.895 10 N -0.327 5.327 11 C 0.294 3.706 12 O -0.403 6.403 13 C 0.288 3.712 14 O -0.423 6.423 15 N -0.308 5.308 16 C -0.004 4.004 17 C -0.089 4.089 18 N -0.266 5.266 19 C 0.045 3.955 20 C -0.554 4.554 21 H 0.059 0.941 22 C -0.189 4.189 23 N -0.586 5.586 24 Si 0.770 3.230 25 H -0.188 1.188 26 H -0.208 1.208 27 H -0.178 1.178 28 C -0.072 4.072 29 C -0.049 4.049 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.257 0.743 42 H 0.105 0.895 43 H 0.125 0.875 44 H 0.118 0.882 45 H 0.045 0.955 46 H 0.002 0.998 47 H 0.053 0.947 48 H 0.076 0.924 49 H 0.038 0.962 50 H 0.092 0.908 51 H 0.090 0.910 52 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -30.263 2.320 -5.458 30.839 hybrid contribution 0.924 1.303 0.589 1.703 sum -29.339 3.623 -4.869 29.960 Atomic orbital electron populations 1.21751 0.94588 1.01924 1.02381 1.21539 0.96895 0.95161 1.01942 1.22414 0.91420 0.97307 0.99672 0.88883 1.22369 0.99694 0.97207 0.95629 1.22076 0.95075 0.99230 0.99304 1.22549 0.99545 0.96178 0.99458 1.22227 0.96300 0.98567 0.79522 0.89502 1.45835 1.12443 1.64196 1.10276 1.20087 0.83590 0.78241 0.88730 1.90367 1.49672 1.49388 1.50855 1.20174 0.82864 0.78473 0.89724 1.90709 1.50752 1.50537 1.50317 1.48209 1.08216 1.65241 1.09154 1.21912 0.95970 1.01517 0.80963 1.22541 0.92076 0.96442 0.97839 1.61861 1.03384 1.58228 1.03129 1.19950 0.87580 0.91420 0.96585 1.21229 0.93369 1.16037 1.24797 0.94065 1.25829 0.96027 0.99909 0.97149 1.70041 1.02654 1.43643 1.42305 0.85723 0.78443 0.79468 0.79319 1.18792 1.20846 1.17830 1.22282 0.96829 0.96933 0.91145 1.23278 0.87267 0.99706 0.94655 0.91748 0.92759 0.92480 0.91718 0.92837 0.89572 0.90825 0.90763 0.91142 0.91740 0.92356 0.74309 0.89483 0.87529 0.88238 0.95474 0.99755 0.94750 0.92418 0.96187 0.90849 0.91021 0.82721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.81 71.98 0.71 -0.52 16 2 C -0.12 -1.24 5.43 30.60 0.17 -1.07 16 3 C -0.09 -0.90 2.46 -9.51 -0.02 -0.93 16 4 H 0.09 0.82 8.02 -2.39 -0.02 0.80 16 5 C -0.11 -0.92 5.69 31.67 0.18 -0.74 16 6 C -0.12 -1.24 6.80 31.32 0.21 -1.02 16 7 C -0.14 -2.14 6.53 31.32 0.20 -1.93 16 8 C 0.14 2.13 2.60 46.06 0.12 2.25 16 9 H 0.09 1.62 7.57 -2.39 -0.02 1.60 16 10 N -0.68 -12.47 5.11 -438.81 -2.24 -14.71 16 11 C 0.51 12.96 7.80 87.27 0.68 13.64 16 12 O -0.52 -15.39 12.74 -3.25 -0.04 -15.44 16 13 C 0.50 14.27 7.77 87.27 0.68 14.95 16 14 O -0.54 -16.11 15.95 -3.21 -0.05 -16.16 16 15 N -0.58 -17.40 3.01 -819.54 -2.47 -19.87 16 16 C 0.12 3.34 6.59 86.35 0.57 3.91 16 17 C 0.04 1.29 5.62 86.38 0.49 1.77 16 18 N -0.54 -22.37 4.62 -899.83 -4.16 -26.53 16 19 C 0.17 8.21 3.79 85.56 0.32 8.53 16 20 C -0.52 -29.75 8.96 25.60 0.23 -29.52 16 21 H 0.04 2.64 7.37 -2.92 -0.02 2.62 16 22 C 0.01 0.49 5.47 84.66 0.46 0.95 16 23 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 24 Si 0.95 44.01 27.47 68.60 1.88 45.89 16 25 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 27 H -0.25 -11.14 6.54 99.48 0.65 -10.48 16 28 C 0.06 2.25 5.46 86.38 0.47 2.73 16 29 C 0.07 2.39 6.36 86.35 0.55 2.94 16 30 H 0.06 0.43 7.65 -2.39 -0.02 0.41 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.70 7.99 -2.39 -0.02 0.68 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.09 0.50 8.09 -2.39 -0.02 0.48 16 36 H 0.07 0.60 7.94 -2.39 -0.02 0.58 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.06 1.06 8.04 -2.39 -0.02 1.04 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.42 6.57 8.02 -92.71 -0.74 5.83 16 42 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.11 2.72 7.08 -2.39 -0.02 2.70 16 44 H 0.10 2.91 7.99 -2.39 -0.02 2.89 16 45 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 46 H -0.02 -0.74 7.18 -2.39 -0.02 -0.75 16 47 H 0.03 1.59 7.40 -2.39 -0.02 1.57 16 48 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 49 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 50 H 0.07 3.32 6.67 -2.39 -0.02 3.31 16 51 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 52 H 0.16 5.07 3.91 -75.83 -0.30 4.77 16 Total: -1.00 -68.73 401.41 -0.94 -69.67 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -0.18 Total: 19.99 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 6.02 Total: 15.94 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -8.57 Total: -119.90 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.09 Total: -31.60 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Total: -68.73 -0.94 -69.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602268773.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.222 kcal (2) G-P(sol) polarization free energy of solvation -68.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds