Wall clock time and date at job start Tue Mar 31 2020 19:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47484 * 2 1 4 4 C 1.50692 * 109.47497 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00010 * 0.02562 * 4 3 2 6 6 N 1.34782 * 120.00021 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99755 * 180.02562 * 6 4 3 8 8 C 1.53039 * 109.45707 * 155.00088 * 7 6 4 9 9 C 1.53194 * 109.31218 * 181.38282 * 8 7 6 10 10 N 1.46927 * 108.77615 * 305.36600 * 9 8 7 11 11 C 1.34779 * 120.62966 * 233.58737 * 10 9 8 12 12 O 1.21587 * 119.99753 * 354.92960 * 11 10 9 13 13 N 1.34772 * 119.99718 * 174.93365 * 11 10 9 14 14 C 1.46505 * 119.99855 * 185.02528 * 13 11 10 15 15 C 1.52997 * 109.47084 * 185.00915 * 14 13 11 16 16 C 1.50703 * 115.54846 * 275.57191 * 15 14 13 17 17 H 1.08001 * 120.00046 * 114.79809 * 16 15 14 18 18 C 1.37880 * 119.99936 * 294.79176 * 16 15 14 19 19 N 1.31514 * 120.00012 * 352.06984 * 18 16 15 20 20 Si 1.86794 * 119.99842 * 172.06663 * 18 16 15 21 21 H 1.48501 * 109.47441 * 60.00153 * 20 18 16 22 22 H 1.48505 * 109.47213 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47335 * 300.00057 * 20 18 16 24 24 C 1.53003 * 117.49998 * 129.86847 * 15 14 13 25 25 C 1.52994 * 117.50220 * 61.24592 * 15 14 13 26 26 C 1.46926 * 118.73969 * 53.85627 * 10 9 8 27 27 C 1.53040 * 109.45658 * 275.06550 * 7 6 4 28 28 H 1.09003 * 109.47163 * 300.00247 * 1 2 3 29 29 H 1.09008 * 109.46883 * 60.00142 * 1 2 3 30 30 H 1.08998 * 109.47225 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47824 * 240.00007 * 2 1 3 32 32 H 1.09004 * 109.47262 * 119.99577 * 2 1 3 33 33 H 1.09003 * 109.47122 * 59.99728 * 3 2 1 34 34 H 1.08995 * 109.46800 * 300.00040 * 3 2 1 35 35 H 0.96999 * 119.99530 * 0.02562 * 6 4 3 36 36 H 1.08993 * 109.46213 * 35.02565 * 7 6 4 37 37 H 1.09001 * 109.49922 * 61.42854 * 8 7 6 38 38 H 1.09003 * 109.52569 * 301.34788 * 8 7 6 39 39 H 1.08996 * 109.58666 * 185.57697 * 9 8 7 40 40 H 1.08999 * 109.70414 * 65.22323 * 9 8 7 41 41 H 0.97002 * 120.00388 * 5.02743 * 13 11 10 42 42 H 1.09005 * 109.47002 * 305.01105 * 14 13 11 43 43 H 1.08996 * 109.46975 * 65.00432 * 14 13 11 44 44 H 0.97003 * 119.99721 * 185.00083 * 19 18 16 45 45 H 1.09000 * 117.49407 * 359.97438 * 24 15 14 46 46 H 1.08999 * 117.50286 * 145.01905 * 24 15 14 47 47 H 1.09003 * 117.50192 * 214.98195 * 25 15 14 48 48 H 1.09004 * 117.49779 * 359.97169 * 25 15 14 49 49 H 1.09002 * 109.58439 * 65.93114 * 26 10 9 50 50 H 1.08998 * 109.58820 * 186.35679 * 26 10 9 51 51 H 1.09001 * 109.49637 * 298.56549 * 27 7 6 52 52 H 1.09000 * 109.49727 * 58.63741 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2209 2.6098 0.0002 7 6 5.6859 2.6097 0.0003 8 6 6.1958 3.9172 -0.6100 9 6 7.7273 3.8990 -0.6400 10 7 8.2237 3.6325 0.7169 11 6 9.1179 4.4584 1.2956 12 8 9.5910 5.3821 0.6620 13 7 9.4876 4.2604 2.5764 14 6 10.3738 5.2201 3.2397 15 6 10.7359 4.7014 4.6328 16 6 9.7396 5.0103 5.7205 17 1 9.2036 4.2079 6.2056 18 6 9.5125 6.3172 6.0966 19 7 10.2720 7.2798 5.6209 20 14 8.1260 6.7206 7.2815 21 1 8.3511 6.0115 8.5667 22 1 8.0918 8.1855 7.5232 23 1 6.8323 6.2857 6.6962 24 6 12.2170 4.6805 5.0159 25 6 11.4852 3.3703 4.7183 26 6 7.7314 2.4452 1.4288 27 6 6.1956 2.4828 1.4377 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7358 3.4498 -0.0001 36 1 6.0490 1.7679 -0.5892 37 1 5.8536 4.7581 -0.0067 38 1 5.8132 4.0188 -1.6256 39 1 8.0976 4.8657 -0.9813 40 1 8.0724 3.1164 -1.3156 41 1 9.1671 3.4825 3.0590 42 1 11.2825 5.3432 2.6502 43 1 9.8666 6.1806 3.3300 44 1 10.1598 8.1888 5.9403 45 1 12.9335 5.0359 4.2753 46 1 12.4712 4.8903 6.0549 47 1 11.2579 2.7180 5.5615 48 1 11.7199 2.8638 3.7821 49 1 8.0747 1.5450 0.9190 50 1 8.1044 2.4524 2.4530 51 1 5.8535 3.3372 2.0217 52 1 5.8125 1.5630 1.8797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797563156.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:34 Heat of formation + Delta-G solvation = -75.209980 kcal Electronic energy + Delta-G solvation = -29808.120393 eV Core-core repulsion = 25806.926925 eV Total energy + Delta-G solvation = -4001.193468 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.56935 -40.74510 -38.94120 -38.19861 -35.74202 -35.21837 -34.96911 -34.05039 -32.28269 -32.02140 -28.93193 -28.10189 -27.10269 -25.45930 -24.35497 -23.08752 -22.80338 -21.95798 -21.22843 -21.21080 -20.42535 -19.40742 -18.00434 -17.91098 -17.31380 -16.95848 -16.80626 -16.69500 -16.44046 -15.84687 -15.45013 -15.33944 -15.18829 -15.05310 -14.94703 -14.57872 -14.23976 -14.15553 -13.90920 -13.56891 -13.38463 -13.33158 -13.05283 -12.92073 -12.85880 -12.78329 -12.61574 -12.38606 -12.31224 -12.06941 -12.03821 -12.01082 -11.65737 -11.60406 -11.47556 -11.17458 -10.95550 -10.83472 -10.51425 -10.11014 -10.07143 -10.04202 -9.43466 -8.10476 -6.21930 1.42635 1.44299 1.51057 1.67715 1.70721 2.12117 2.28955 2.42056 2.97604 3.15952 3.54331 3.64806 3.75365 3.85632 4.00122 4.03529 4.09789 4.15019 4.21870 4.27765 4.37861 4.49941 4.54868 4.58627 4.65798 4.72282 4.72818 4.77168 4.79549 4.79959 4.84368 4.88317 4.93497 4.95919 5.02848 5.07459 5.21920 5.24687 5.27173 5.29712 5.45617 5.53195 5.55423 5.57725 5.59961 5.72113 5.82034 5.98704 6.36730 6.60311 6.82305 7.07549 7.31029 7.45429 7.62896 8.96885 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012034 B = 0.002602 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.266671 B =10757.472455 C =11941.411896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.135 4.135 4 C 0.507 3.493 5 O -0.585 6.585 6 N -0.717 5.717 7 C 0.152 3.848 8 C -0.128 4.128 9 C 0.129 3.871 10 N -0.627 5.627 11 C 0.698 3.302 12 O -0.642 6.642 13 N -0.721 5.721 14 C 0.201 3.799 15 C 0.009 3.991 16 C -0.506 4.506 17 H 0.062 0.938 18 C 0.024 3.976 19 N -0.906 5.906 20 Si 0.950 3.050 21 H -0.270 1.270 22 H -0.290 1.290 23 H -0.271 1.271 24 C -0.174 4.174 25 C -0.173 4.173 26 C 0.114 3.886 27 C -0.136 4.136 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.415 0.585 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.403 0.597 42 H 0.026 0.974 43 H 0.035 0.965 44 H 0.260 0.740 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.081 0.919 51 H 0.064 0.936 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.188 -11.747 -13.106 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.175 4.175 4 C 0.296 3.704 5 O -0.465 6.465 6 N -0.369 5.369 7 C 0.047 3.953 8 C -0.166 4.166 9 C 0.006 3.994 10 N -0.365 5.365 11 C 0.400 3.600 12 O -0.524 6.524 13 N -0.377 5.377 14 C 0.076 3.924 15 C 0.008 3.992 16 C -0.543 4.543 17 H 0.080 0.920 18 C -0.177 4.177 19 N -0.544 5.544 20 Si 0.776 3.224 21 H -0.195 1.195 22 H -0.216 1.216 23 H -0.196 1.196 24 C -0.212 4.212 25 C -0.210 4.210 26 C -0.009 4.009 27 C -0.176 4.176 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.251 0.749 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.241 0.759 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.107 0.893 48 H 0.106 0.894 49 H 0.105 0.895 50 H 0.099 0.901 51 H 0.082 0.918 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.445 -11.593 -13.581 24.963 hybrid contribution -0.413 0.734 1.165 1.437 sum -17.858 -10.859 -12.416 24.310 Atomic orbital electron populations 1.21765 0.93911 1.02283 1.02669 1.21252 0.96554 0.95072 1.01964 1.21771 0.89174 1.00050 1.06477 1.21390 0.91653 0.83067 0.74291 1.90693 1.71621 1.32892 1.51327 1.46062 1.06652 1.09270 1.74883 1.20793 0.80150 0.98742 0.95648 1.22121 0.94688 0.96622 1.03202 1.21499 0.93367 1.02930 0.81579 1.47329 1.44710 1.26711 1.17769 1.16117 0.80015 0.82035 0.81874 1.90831 1.60923 1.36043 1.64631 1.45259 1.52538 1.28986 1.10919 1.20373 0.90581 0.90597 0.90860 1.19079 0.91543 0.96307 0.92289 1.20677 1.22476 0.92061 1.19127 0.92034 1.25705 0.97858 0.96407 0.97689 1.70088 1.39578 1.01158 1.43537 0.85740 0.80334 0.76761 0.79560 1.19476 1.21588 1.19638 1.22668 0.96731 1.01806 1.00013 1.22878 1.05886 0.90439 1.01783 1.21802 0.94074 0.87481 0.97579 1.22293 0.94763 1.02748 0.97766 0.91921 0.91579 0.92524 0.92739 0.93130 0.86989 0.86412 0.74856 0.90026 0.91249 0.87532 0.90326 0.89849 0.75878 0.95554 0.94676 0.93091 0.91218 0.91314 0.89296 0.89365 0.89456 0.90056 0.91771 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 71.98 0.71 -0.58 16 2 C -0.11 -1.44 5.22 30.59 0.16 -1.28 16 3 C -0.14 -1.35 5.70 29.85 0.17 -1.18 16 4 C 0.51 8.74 7.79 87.65 0.68 9.42 16 5 O -0.59 -15.42 15.64 -3.03 -0.05 -15.46 16 6 N -0.72 -9.84 5.08 -442.42 -2.25 -12.09 16 7 C 0.15 2.62 2.41 45.02 0.11 2.72 16 8 C -0.13 -2.07 5.55 30.67 0.17 -1.90 16 9 C 0.13 2.93 6.42 86.36 0.55 3.48 16 10 N -0.63 -17.76 2.97 -836.05 -2.48 -20.24 16 11 C 0.70 27.24 8.29 179.06 1.49 28.72 16 12 O -0.64 -30.40 15.76 -3.99 -0.06 -30.46 16 13 N -0.72 -28.67 5.37 -478.53 -2.57 -31.24 16 14 C 0.20 9.63 5.53 86.38 0.48 10.11 16 15 C 0.01 0.41 1.32 -52.93 -0.07 0.34 16 16 C -0.51 -26.13 8.82 25.60 0.23 -25.91 16 17 H 0.06 3.08 7.83 -2.91 -0.02 3.06 16 18 C 0.02 1.30 5.22 84.66 0.44 1.74 16 19 N -0.91 -51.61 12.60 21.45 0.27 -51.34 16 20 Si 0.95 42.25 29.55 68.60 2.03 44.27 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 C -0.17 -7.87 9.88 30.59 0.30 -7.57 16 25 C -0.17 -6.81 9.78 30.59 0.30 -6.51 16 26 C 0.11 2.58 6.46 86.51 0.56 3.14 16 27 C -0.14 -2.78 5.67 30.82 0.17 -2.60 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 32 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 33 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.41 3.38 8.60 -92.71 -0.80 2.58 16 36 H 0.08 1.61 7.58 -2.39 -0.02 1.60 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 2.14 7.03 -2.39 -0.02 2.12 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.40 14.12 5.87 -92.71 -0.54 13.57 16 42 H 0.03 1.30 7.87 -2.38 -0.02 1.29 16 43 H 0.03 1.97 7.26 -2.39 -0.02 1.95 16 44 H 0.26 14.30 8.32 -92.71 -0.77 13.53 16 45 H 0.07 3.05 8.06 -2.39 -0.02 3.03 16 46 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 47 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 48 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 49 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.08 1.92 5.56 -2.39 -0.01 1.91 16 51 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -72.17 416.43 0.92 -71.26 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: -0.43 Total: 33.16 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 6.46 Total: 12.15 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -7.03 Total: -114.91 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -0.11 Total: -45.93 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -72.17 0.92 -71.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563156.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.954 kcal (2) G-P(sol) polarization free energy of solvation -72.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds