Wall clock time and date at job start Tue Mar 31 2020 20:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47478 * 2 1 4 4 H 1.09005 * 109.46597 * 304.99962 * 3 2 1 5 5 C 1.52997 * 109.47553 * 64.99527 * 3 2 1 6 6 C 1.52999 * 109.47074 * 185.00318 * 3 2 1 7 7 O 1.42906 * 109.46744 * 174.99588 * 6 3 2 8 8 N 1.41599 * 113.99883 * 179.97438 * 7 6 3 9 9 C 1.34780 * 120.00021 * 180.02562 * 8 7 6 10 10 O 1.21273 * 119.99822 * 359.97438 * 9 8 7 11 11 C 1.50695 * 119.99639 * 179.97438 * 9 8 7 12 12 C 1.52999 * 109.46918 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47451 * 180.02562 * 12 11 9 14 14 C 1.39866 * 126.04287 * 89.96846 * 13 12 11 15 15 C 1.50705 * 125.89802 * 0.03191 * 14 13 12 16 16 N 1.30837 * 108.20458 * 180.02562 * 14 13 12 17 17 N 1.40086 * 108.20700 * 0.02562 * 16 14 13 18 18 C 1.46491 * 126.04129 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.46957 * 90.02579 * 18 17 16 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48501 * 109.47188 * 90.00793 * 23 21 19 25 25 H 1.48501 * 109.47085 * 210.00372 * 23 21 19 26 26 H 1.48498 * 109.47634 * 330.00608 * 23 21 19 27 27 C 1.34955 * 107.92007 * 0.26426 * 17 16 14 28 28 C 1.50708 * 126.12162 * 179.73553 * 27 17 16 29 29 H 1.09000 * 109.47117 * 60.00356 * 1 2 3 30 30 H 1.09002 * 109.47049 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46786 * 300.00184 * 1 2 3 32 32 H 1.08998 * 109.46971 * 239.99145 * 2 1 3 33 33 H 1.09005 * 109.46734 * 119.99400 * 2 1 3 34 34 H 1.08999 * 109.47131 * 300.00469 * 5 3 2 35 35 H 1.09004 * 109.46579 * 60.00075 * 5 3 2 36 36 H 1.08998 * 109.47325 * 180.02562 * 5 3 2 37 37 H 1.08988 * 109.47704 * 54.99465 * 6 3 2 38 38 H 1.08996 * 109.46976 * 294.98726 * 6 3 2 39 39 H 0.97005 * 119.99786 * 359.97438 * 8 7 6 40 40 H 1.08997 * 109.47366 * 60.00063 * 11 9 8 41 41 H 1.09000 * 109.47755 * 299.99776 * 11 9 8 42 42 H 1.09001 * 109.47356 * 60.00206 * 12 11 9 43 43 H 1.09002 * 109.47319 * 299.99905 * 12 11 9 44 44 H 1.08999 * 109.46544 * 269.99193 * 15 14 13 45 45 H 1.09000 * 109.47294 * 29.99156 * 15 14 13 46 46 H 1.08993 * 109.46794 * 149.99571 * 15 14 13 47 47 H 1.09004 * 109.47166 * 330.02845 * 18 17 16 48 48 H 1.08994 * 109.47507 * 210.02551 * 18 17 16 49 49 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.47042 * 90.02700 * 28 27 17 51 51 H 1.09007 * 109.46511 * 210.02061 * 28 27 17 52 52 H 1.08991 * 109.47237 * 330.02091 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3072 6 6 3.5649 1.4442 -0.1258 7 8 4.0316 2.7898 -0.2430 8 7 5.4378 2.9031 -0.3650 9 6 6.0082 4.1185 -0.4826 10 8 5.3172 5.1151 -0.4844 11 6 7.5048 4.2391 -0.6118 12 6 7.8892 5.7152 -0.7300 13 6 9.3858 5.8359 -0.8599 14 6 10.1107 5.8350 -2.0560 15 6 9.5299 5.7138 -3.4413 16 7 11.3803 5.9578 -1.7645 17 7 11.5036 6.0402 -0.3716 18 6 12.7552 6.1845 0.3759 19 6 13.0647 7.6479 0.5597 20 1 12.3957 8.3957 0.1600 21 6 14.1987 8.0322 1.2434 22 7 15.0131 7.1216 1.7304 23 14 14.5783 9.8461 1.4778 24 1 13.9570 10.3228 2.7396 25 1 16.0491 10.0392 1.5466 26 1 14.0305 10.6184 0.3338 27 6 10.2662 5.9567 0.1605 28 6 9.9257 5.9958 1.6281 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.5490 2.1254 1.3968 35 1 2.0699 1.5876 2.1491 36 1 1.9983 3.1544 1.3070 37 1 3.8571 0.8799 -1.0112 38 1 4.0030 0.9836 0.7596 39 1 5.9905 2.1060 -0.3632 40 1 7.8368 3.7051 -1.5021 41 1 7.9815 3.8086 0.2689 42 1 7.5572 6.2496 0.1601 43 1 7.4126 6.1454 -1.6110 44 1 9.4766 4.6619 -3.7220 45 1 8.5287 6.1445 -3.4545 46 1 10.1643 6.2471 -4.1492 47 1 13.5653 5.7084 -0.1766 48 1 12.6526 5.7096 1.3515 49 1 15.8111 7.3919 2.2112 50 1 9.7535 7.0278 1.9338 51 1 9.0251 5.4086 1.8078 52 1 10.7519 5.5793 2.2040 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816977212.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:15 Heat of formation + Delta-G solvation = 1.736128 kcal Electronic energy + Delta-G solvation = -28528.882663 eV Core-core repulsion = 24531.025829 eV Total energy + Delta-G solvation = -3997.856834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.63522 -39.58980 -38.25041 -36.16327 -34.40298 -33.42877 -32.49367 -32.41190 -30.44905 -29.84522 -28.96380 -27.19157 -26.58755 -25.88027 -23.97884 -23.60560 -22.25039 -20.96959 -20.18892 -18.83808 -18.66800 -18.32183 -17.05552 -16.69866 -16.38955 -15.69327 -15.42762 -15.12463 -14.96343 -14.66437 -14.43825 -14.22946 -13.85322 -13.67751 -13.26668 -13.08351 -12.93013 -12.73284 -12.57936 -12.49390 -12.44270 -12.32978 -12.18106 -12.16278 -11.80093 -11.67350 -11.43112 -11.34785 -11.32071 -11.27429 -11.11581 -10.98644 -10.97548 -10.81401 -10.74345 -10.26424 -9.96906 -9.73796 -9.62173 -9.06773 -8.65380 -8.19451 -7.49952 -6.27257 -4.34442 1.67713 2.59362 2.75776 3.20748 3.27347 3.32651 3.35243 3.59946 4.04180 4.28885 4.29308 4.30772 4.56923 4.61290 4.73016 4.86537 4.98088 5.06467 5.12527 5.14126 5.15261 5.19692 5.23818 5.31753 5.37976 5.49227 5.51696 5.55752 5.63764 5.65440 5.67767 5.80510 5.85042 5.93571 5.94899 5.96641 6.00992 6.04730 6.23258 6.36449 6.42099 6.53106 6.62685 6.83657 7.01851 7.10448 7.11922 7.50161 7.65730 7.87515 8.04361 8.17923 8.65741 8.74699 9.32114 10.80348 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023018 B = 0.001741 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.125399 B =16079.925350 C =16570.579940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.085 4.085 4 H 0.082 0.918 5 C -0.150 4.150 6 C 0.035 3.965 7 O -0.146 6.146 8 N -0.605 5.605 9 C 0.524 3.476 10 O -0.520 6.520 11 C -0.120 4.120 12 C -0.011 4.011 13 C -0.270 4.270 14 C 0.051 3.949 15 C -0.065 4.065 16 N -0.296 5.296 17 N -0.324 5.324 18 C 0.257 3.743 19 C -0.536 4.536 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.892 5.892 23 Si 0.906 3.094 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.272 1.272 27 C 0.095 3.905 28 C -0.087 4.087 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.405 0.595 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.051 0.949 48 H 0.051 0.949 49 H 0.268 0.732 50 H 0.077 0.923 51 H 0.071 0.929 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.820 -15.962 -2.275 28.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.104 4.104 4 H 0.101 0.899 5 C -0.207 4.207 6 C -0.042 4.042 7 O -0.150 6.150 8 N -0.309 5.309 9 C 0.312 3.688 10 O -0.393 6.393 11 C -0.161 4.161 12 C -0.050 4.050 13 C -0.282 4.282 14 C -0.113 4.113 15 C -0.124 4.124 16 N -0.120 5.120 17 N -0.104 5.104 18 C 0.139 3.861 19 C -0.574 4.574 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.530 5.530 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.197 1.197 27 C -0.037 4.037 28 C -0.145 4.145 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.245 0.755 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.096 0.904 51 H 0.090 0.910 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.906 -14.978 -2.559 27.488 hybrid contribution -0.098 0.121 0.594 0.614 sum -23.004 -14.858 -1.965 27.455 Atomic orbital electron populations 1.21802 0.95122 1.01839 1.02296 1.21509 0.96578 0.94987 1.02352 1.21126 0.91799 0.97282 1.00240 0.89916 1.21880 1.01488 1.01365 0.95985 1.23083 0.95809 0.84335 1.00987 1.90583 1.02770 1.25272 1.96384 1.47866 0.95269 1.09547 1.78188 1.21308 0.90694 0.81200 0.75618 1.90724 1.64097 1.36005 1.48522 1.21741 0.87855 1.01694 1.04794 1.19410 0.90404 0.92064 1.03082 1.19303 0.94960 1.22403 0.91572 1.21956 0.91239 1.02377 0.95751 1.20036 1.00038 1.01732 0.90582 1.77283 1.18074 1.24298 0.92374 1.49249 1.07078 1.50604 1.03435 1.19657 0.77528 0.98560 0.90359 1.21312 1.08677 0.90950 1.36481 0.91775 1.24924 0.95389 0.98589 0.94852 1.69920 1.13356 1.33343 1.36382 0.86355 0.77579 0.84012 0.78766 1.20300 1.20853 1.19655 1.20794 0.86022 1.00919 0.95945 1.20364 1.01738 1.03156 0.89253 0.92528 0.92523 0.92208 0.91692 0.91598 0.92134 0.92661 0.91666 0.92199 0.92136 0.75518 0.88481 0.88562 0.91100 0.90967 0.91578 0.91163 0.91553 0.93068 0.93080 0.92268 0.90387 0.91039 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.67 37.16 0.36 -0.31 16 2 C -0.12 -0.53 5.40 -26.73 -0.14 -0.68 16 3 C -0.08 -0.53 2.63 -90.62 -0.24 -0.77 16 4 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 5 C -0.15 -1.02 8.85 37.16 0.33 -0.70 16 6 C 0.04 0.25 5.61 37.16 0.21 0.45 16 7 O -0.15 -1.62 10.64 -29.66 -0.32 -1.94 16 8 N -0.61 -5.97 6.39 31.22 0.20 -5.77 16 9 C 0.52 6.53 7.97 -10.99 -0.09 6.44 16 10 O -0.52 -8.85 16.39 -12.63 -0.21 -9.05 16 11 C -0.12 -1.30 5.68 -27.89 -0.16 -1.46 16 12 C -0.01 -0.15 4.41 -27.88 -0.12 -0.27 16 13 C -0.27 -4.71 5.35 -105.05 -0.56 -5.27 16 14 C 0.05 0.95 7.22 -82.40 -0.59 0.36 16 15 C -0.07 -0.91 10.26 36.01 0.37 -0.54 16 16 N -0.30 -6.72 12.58 33.67 0.42 -6.30 16 17 N -0.32 -7.46 3.60 -58.31 -0.21 -7.67 16 18 C 0.26 6.52 6.00 -5.20 -0.03 6.49 16 19 C -0.54 -14.77 9.39 -34.44 -0.32 -15.09 16 20 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 21 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 23 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 27 C 0.09 1.84 6.93 -82.26 -0.57 1.27 16 28 C -0.09 -1.39 9.72 36.01 0.35 -1.04 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.26 6.57 -51.93 -0.34 -0.08 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 37 H 0.06 0.34 8.14 -51.94 -0.42 -0.09 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.41 2.46 8.54 -40.82 -0.35 2.11 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.03 7.75 -51.93 -0.40 0.63 16 43 H 0.07 1.02 7.21 -51.93 -0.37 0.65 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.86 7.25 -51.93 -0.38 0.48 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 48 H 0.05 1.28 7.04 -51.93 -0.37 0.91 16 49 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 50 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 51 H 0.07 0.91 7.79 -51.93 -0.40 0.51 16 52 H 0.07 1.19 7.07 -51.93 -0.37 0.83 16 LS Contribution 428.01 15.07 6.45 6.45 Total: -1.00 -34.15 428.01 -8.45 -42.60 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -9.19 Total: -0.79 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -1.31 Total: -9.42 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 1.15 Total: -44.01 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -0.52 Total: -10.99 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -34.15 -8.45 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816977212.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.335 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds