Wall clock time and date at job start Tue Mar 31 2020 20:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 55.00475 * 3 2 1 5 5 C 1.53006 * 109.47127 * 295.00521 * 3 2 1 6 6 C 1.52997 * 109.47232 * 175.00399 * 3 2 1 7 7 O 1.42911 * 109.47095 * 185.00182 * 6 3 2 8 8 N 1.41603 * 113.99880 * 179.97438 * 7 6 3 9 9 C 1.34774 * 119.99547 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00533 * 359.97438 * 9 8 7 11 11 C 1.50702 * 119.99666 * 179.97438 * 9 8 7 12 12 C 1.52993 * 109.47228 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47228 * 179.97438 * 12 11 9 14 14 C 1.39870 * 126.03802 * 90.02763 * 13 12 11 15 15 C 1.50704 * 125.90117 * 359.95590 * 14 13 12 16 16 N 1.30840 * 108.20126 * 179.97438 * 14 13 12 17 17 N 1.40083 * 108.20397 * 359.97438 * 16 14 13 18 18 C 1.46505 * 126.03670 * 180.02562 * 17 16 14 19 19 C 1.50696 * 109.46883 * 90.02178 * 18 17 16 20 20 H 1.07994 * 120.00581 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99749 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00092 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00095 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47396 * 90.00284 * 23 21 19 25 25 H 1.48510 * 109.47275 * 210.00086 * 23 21 19 26 26 H 1.48501 * 109.47126 * 330.00106 * 23 21 19 27 27 C 1.34946 * 107.92631 * 359.75632 * 17 16 14 28 28 C 1.50702 * 126.12807 * 180.23849 * 27 17 16 29 29 H 1.09002 * 109.46818 * 300.00038 * 1 2 3 30 30 H 1.08994 * 109.47281 * 59.99487 * 1 2 3 31 31 H 1.09004 * 109.47031 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46818 * 239.99962 * 2 1 3 33 33 H 1.09004 * 109.47686 * 120.00185 * 2 1 3 34 34 H 1.09001 * 109.47002 * 299.99574 * 5 3 2 35 35 H 1.08993 * 109.46955 * 60.00011 * 5 3 2 36 36 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 37 37 H 1.09000 * 109.47278 * 304.99661 * 6 3 2 38 38 H 1.08994 * 109.47510 * 65.00170 * 6 3 2 39 39 H 0.97001 * 119.99658 * 359.97438 * 8 7 6 40 40 H 1.09002 * 109.47387 * 300.00212 * 11 9 8 41 41 H 1.08999 * 109.47226 * 59.99935 * 11 9 8 42 42 H 1.09002 * 109.47131 * 300.00394 * 12 11 9 43 43 H 1.08999 * 109.47049 * 59.99852 * 12 11 9 44 44 H 1.09000 * 109.47194 * 90.00094 * 15 14 13 45 45 H 1.09000 * 109.47097 * 210.00367 * 15 14 13 46 46 H 1.08998 * 109.46469 * 330.00034 * 15 14 13 47 47 H 1.08996 * 109.47072 * 210.02842 * 18 17 16 48 48 H 1.09001 * 109.46728 * 330.02684 * 18 17 16 49 49 H 0.97001 * 120.00321 * 179.97438 * 22 21 19 50 50 H 1.09011 * 109.46964 * 270.18178 * 28 27 17 51 51 H 1.09005 * 109.46826 * 30.17769 * 28 27 17 52 52 H 1.09000 * 109.47255 * 150.18050 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1256 7 8 4.0316 2.7899 0.2428 8 7 5.4377 2.9031 0.3657 9 6 6.0081 4.1185 0.4834 10 8 5.3172 5.1153 0.4834 11 6 7.5045 4.2390 0.6148 12 6 7.8890 5.7153 0.7314 13 6 9.3854 5.8357 0.8634 14 6 10.2966 5.9664 -0.1897 15 6 9.9519 6.0103 -1.6561 16 7 11.4999 6.0435 0.3182 17 7 11.3922 5.9648 1.7127 18 6 12.5028 6.0123 2.6670 19 6 12.7622 7.4425 3.0650 20 1 12.1599 8.2365 2.6491 21 6 13.7680 7.7371 3.9609 22 7 14.5012 6.7701 4.4677 23 14 14.0891 9.5097 4.4548 24 1 13.2687 9.8482 5.6455 25 1 15.5280 9.6799 4.7805 26 1 13.7261 10.4102 3.3312 27 6 10.0843 5.8436 2.0221 28 6 9.5060 5.7323 3.4093 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.0698 1.5876 -2.1492 35 1 0.5489 2.1253 -1.3968 36 1 1.9982 3.1544 -1.3071 37 1 3.8571 0.8800 1.0112 38 1 4.0029 0.9836 -0.7597 39 1 5.9903 2.1059 0.3653 40 1 7.8351 3.7056 1.5060 41 1 7.9824 3.8079 -0.2649 42 1 7.5584 6.2483 -0.1601 43 1 7.4111 6.1468 1.6108 44 1 9.7814 7.0435 -1.9585 45 1 10.7756 5.5934 -2.2356 46 1 9.0495 5.4257 -1.8348 47 1 12.2468 5.4296 3.5517 48 1 13.3975 5.5960 2.2041 49 1 15.2090 6.9773 5.0978 50 1 9.4533 4.6824 3.6978 51 1 10.1417 6.2708 4.1122 52 1 8.5048 6.1631 3.4212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816977213.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:18 Heat of formation + Delta-G solvation = 1.425044 kcal Electronic energy + Delta-G solvation = -28523.263207 eV Core-core repulsion = 24525.392884 eV Total energy + Delta-G solvation = -3997.870324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.63160 -39.58869 -38.24980 -36.16315 -34.40410 -33.42206 -32.48677 -32.41281 -30.45480 -29.84923 -28.95919 -27.18911 -26.56766 -25.88719 -23.98113 -23.60758 -22.24402 -20.96932 -20.18953 -18.83463 -18.66647 -18.32067 -17.05198 -16.70476 -16.39215 -15.65999 -15.43009 -15.18005 -14.89932 -14.68568 -14.41407 -14.23711 -13.88385 -13.63417 -13.27112 -13.09631 -12.91565 -12.67964 -12.59163 -12.53770 -12.46148 -12.30860 -12.17965 -12.15496 -11.85776 -11.63376 -11.42832 -11.36493 -11.32213 -11.23357 -11.11765 -10.98654 -10.95814 -10.81562 -10.75646 -10.26567 -9.97052 -9.73801 -9.62004 -9.06752 -8.65756 -8.18994 -7.50165 -6.27431 -4.34921 1.67760 2.59444 2.75711 3.20564 3.27219 3.32640 3.35282 3.60810 4.04218 4.28805 4.29067 4.30770 4.57009 4.61339 4.73036 4.86457 4.98111 5.06026 5.12191 5.13917 5.15185 5.20249 5.23765 5.32554 5.36450 5.49038 5.51489 5.55796 5.65142 5.66077 5.68709 5.83822 5.85011 5.92807 5.96050 5.96653 6.00425 6.02721 6.23497 6.35932 6.46761 6.52656 6.62691 6.86936 7.00723 7.10170 7.11975 7.50295 7.65560 7.87353 8.04629 8.17983 8.65820 8.74732 9.31833 10.80046 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.001729 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.444386 B =16187.121272 C =16635.493893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.085 4.085 4 H 0.083 0.917 5 C -0.150 4.150 6 C 0.035 3.965 7 O -0.146 6.146 8 N -0.605 5.605 9 C 0.524 3.476 10 O -0.520 6.520 11 C -0.120 4.120 12 C -0.011 4.011 13 C -0.270 4.270 14 C 0.051 3.949 15 C -0.064 4.064 16 N -0.296 5.296 17 N -0.325 5.325 18 C 0.257 3.743 19 C -0.537 4.537 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.892 5.892 23 Si 0.906 3.094 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.272 1.272 27 C 0.096 3.904 28 C -0.092 4.092 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.405 0.595 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.051 0.949 48 H 0.052 0.948 49 H 0.268 0.732 50 H 0.069 0.931 51 H 0.082 0.918 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.908 -15.311 -8.448 28.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.105 4.105 4 H 0.101 0.899 5 C -0.207 4.207 6 C -0.042 4.042 7 O -0.150 6.150 8 N -0.309 5.309 9 C 0.312 3.688 10 O -0.394 6.394 11 C -0.161 4.161 12 C -0.050 4.050 13 C -0.282 4.282 14 C -0.113 4.113 15 C -0.123 4.123 16 N -0.120 5.120 17 N -0.104 5.104 18 C 0.139 3.861 19 C -0.575 4.575 20 H 0.082 0.918 21 C -0.137 4.137 22 N -0.530 5.530 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.197 1.197 27 C -0.036 4.036 28 C -0.151 4.151 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.245 0.755 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.077 0.923 50 H 0.088 0.912 51 H 0.101 0.899 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.967 -14.316 -8.467 27.554 hybrid contribution -0.202 0.057 0.595 0.631 sum -22.169 -14.260 -7.872 27.510 Atomic orbital electron populations 1.21801 0.95120 1.01840 1.02297 1.21509 0.96579 0.94983 1.02354 1.21128 0.91805 0.97290 1.00241 0.89897 1.21879 1.01486 1.01348 0.95982 1.23084 0.95804 0.84338 1.00987 1.90584 1.02789 1.25268 1.96370 1.47863 0.95277 1.09540 1.78183 1.21311 0.90698 0.81204 0.75612 1.90725 1.64107 1.35998 1.48529 1.21740 0.87845 1.01679 1.04796 1.19413 0.90381 0.92075 1.03087 1.19309 0.95184 1.22335 0.91404 1.21961 0.90891 1.02353 0.96133 1.20028 1.01163 1.02166 0.88962 1.77276 1.21276 1.24354 0.89101 1.49261 1.06046 1.50708 1.04417 1.19656 0.82594 0.98786 0.85059 1.21321 1.17975 0.91831 1.26404 0.91765 1.24925 0.95112 0.98239 0.95466 1.69918 1.20679 1.32040 1.30317 0.86360 0.77570 0.83834 0.78973 1.20291 1.20853 1.19654 1.20780 0.85486 1.00920 0.96415 1.20419 1.01038 1.02291 0.91316 0.92522 0.92215 0.92521 0.91612 0.91676 0.92682 0.92136 0.91678 0.92178 0.92156 0.75516 0.88524 0.88520 0.91002 0.91093 0.91338 0.91622 0.91412 0.93079 0.93047 0.92259 0.91236 0.89946 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.67 37.16 0.36 -0.31 16 2 C -0.12 -0.54 5.40 -26.73 -0.14 -0.68 16 3 C -0.08 -0.53 2.63 -90.62 -0.24 -0.77 16 4 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 5 C -0.15 -1.01 8.85 37.16 0.33 -0.68 16 6 C 0.04 0.25 5.61 37.16 0.21 0.45 16 7 O -0.15 -1.62 10.64 -29.66 -0.32 -1.94 16 8 N -0.61 -5.97 6.39 31.22 0.20 -5.77 16 9 C 0.52 6.53 7.97 -10.99 -0.09 6.45 16 10 O -0.52 -8.86 16.39 -12.63 -0.21 -9.06 16 11 C -0.12 -1.30 5.68 -27.89 -0.16 -1.46 16 12 C -0.01 -0.15 4.45 -27.89 -0.12 -0.27 16 13 C -0.27 -4.71 5.35 -105.05 -0.56 -5.27 16 14 C 0.05 0.95 7.22 -82.40 -0.59 0.36 16 15 C -0.06 -0.90 10.12 36.01 0.36 -0.53 16 16 N -0.30 -6.72 12.58 33.67 0.42 -6.30 16 17 N -0.32 -7.47 3.60 -58.31 -0.21 -7.68 16 18 C 0.26 6.52 5.81 -5.19 -0.03 6.49 16 19 C -0.54 -14.77 9.39 -34.44 -0.32 -15.09 16 20 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 21 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -24.97 13.29 55.43 0.74 -24.24 16 23 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 27 C 0.10 1.86 6.93 -82.26 -0.57 1.29 16 28 C -0.09 -1.48 9.68 36.01 0.35 -1.14 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.26 6.56 -51.93 -0.34 -0.08 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 36 H 0.06 0.57 7.82 -51.93 -0.41 0.16 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.41 2.46 8.54 -40.82 -0.35 2.11 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 43 H 0.07 1.03 7.09 -51.93 -0.37 0.67 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.07 0.77 7.92 -51.93 -0.41 0.36 16 47 H 0.05 1.28 7.68 -51.93 -0.40 0.88 16 48 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 49 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 50 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 51 H 0.08 1.48 7.74 -51.93 -0.40 1.07 16 52 H 0.08 1.06 7.14 -51.93 -0.37 0.69 16 LS Contribution 429.01 15.07 6.47 6.47 Total: -1.00 -34.07 429.01 -8.51 -42.58 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -9.26 Total: -0.72 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.32 Total: -9.47 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 1.15 Total: -43.99 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.52 Total: -11.00 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -34.07 -8.51 -42.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816977213.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.009 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds