Wall clock time and date at job start Tue Mar 31 2020 20:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 55.00475 * 3 2 1 5 5 C 1.53006 * 109.47127 * 295.00521 * 3 2 1 6 6 C 1.52997 * 109.47232 * 175.00399 * 3 2 1 7 7 O 1.42911 * 109.47095 * 185.00182 * 6 3 2 8 8 N 1.41603 * 113.99880 * 179.97438 * 7 6 3 9 9 C 1.34774 * 119.99547 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00533 * 359.97438 * 9 8 7 11 11 C 1.50702 * 119.99666 * 179.97438 * 9 8 7 12 12 C 1.52993 * 109.47228 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47228 * 179.97438 * 12 11 9 14 14 C 1.39870 * 126.03802 * 90.02763 * 13 12 11 15 15 C 1.50704 * 125.90117 * 359.95590 * 14 13 12 16 16 N 1.30840 * 108.20126 * 179.97438 * 14 13 12 17 17 N 1.40083 * 108.20397 * 359.97438 * 16 14 13 18 18 C 1.46505 * 126.03670 * 180.02562 * 17 16 14 19 19 C 1.50696 * 109.46883 * 90.02178 * 18 17 16 20 20 H 1.07994 * 120.00581 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99749 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00092 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00095 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47396 * 90.00284 * 23 21 19 25 25 H 1.48510 * 109.47275 * 210.00086 * 23 21 19 26 26 H 1.48501 * 109.47126 * 330.00106 * 23 21 19 27 27 C 1.34946 * 107.92631 * 359.75632 * 17 16 14 28 28 C 1.50702 * 126.12807 * 180.23849 * 27 17 16 29 29 H 1.09002 * 109.46818 * 300.00038 * 1 2 3 30 30 H 1.08994 * 109.47281 * 59.99487 * 1 2 3 31 31 H 1.09004 * 109.47031 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46818 * 239.99962 * 2 1 3 33 33 H 1.09004 * 109.47686 * 120.00185 * 2 1 3 34 34 H 1.09001 * 109.47002 * 299.99574 * 5 3 2 35 35 H 1.08993 * 109.46955 * 60.00011 * 5 3 2 36 36 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 37 37 H 1.09000 * 109.47278 * 304.99661 * 6 3 2 38 38 H 1.08994 * 109.47510 * 65.00170 * 6 3 2 39 39 H 0.97001 * 119.99658 * 359.97438 * 8 7 6 40 40 H 1.09002 * 109.47387 * 300.00212 * 11 9 8 41 41 H 1.08999 * 109.47226 * 59.99935 * 11 9 8 42 42 H 1.09002 * 109.47131 * 300.00394 * 12 11 9 43 43 H 1.08999 * 109.47049 * 59.99852 * 12 11 9 44 44 H 1.09000 * 109.47194 * 90.00094 * 15 14 13 45 45 H 1.09000 * 109.47097 * 210.00367 * 15 14 13 46 46 H 1.08998 * 109.46469 * 330.00034 * 15 14 13 47 47 H 1.08996 * 109.47072 * 210.02842 * 18 17 16 48 48 H 1.09001 * 109.46728 * 330.02684 * 18 17 16 49 49 H 0.97001 * 120.00321 * 179.97438 * 22 21 19 50 50 H 1.09011 * 109.46964 * 270.18178 * 28 27 17 51 51 H 1.09005 * 109.46826 * 30.17769 * 28 27 17 52 52 H 1.09000 * 109.47255 * 150.18050 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1256 7 8 4.0316 2.7899 0.2428 8 7 5.4377 2.9031 0.3657 9 6 6.0081 4.1185 0.4834 10 8 5.3172 5.1153 0.4834 11 6 7.5045 4.2390 0.6148 12 6 7.8890 5.7153 0.7314 13 6 9.3854 5.8357 0.8634 14 6 10.2966 5.9664 -0.1897 15 6 9.9519 6.0103 -1.6561 16 7 11.4999 6.0435 0.3182 17 7 11.3922 5.9648 1.7127 18 6 12.5028 6.0123 2.6670 19 6 12.7622 7.4425 3.0650 20 1 12.1599 8.2365 2.6491 21 6 13.7680 7.7371 3.9609 22 7 14.5012 6.7701 4.4677 23 14 14.0891 9.5097 4.4548 24 1 13.2687 9.8482 5.6455 25 1 15.5280 9.6799 4.7805 26 1 13.7261 10.4102 3.3312 27 6 10.0843 5.8436 2.0221 28 6 9.5060 5.7323 3.4093 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.0698 1.5876 -2.1492 35 1 0.5489 2.1253 -1.3968 36 1 1.9982 3.1544 -1.3071 37 1 3.8571 0.8800 1.0112 38 1 4.0029 0.9836 -0.7597 39 1 5.9903 2.1059 0.3653 40 1 7.8351 3.7056 1.5060 41 1 7.9824 3.8079 -0.2649 42 1 7.5584 6.2483 -0.1601 43 1 7.4111 6.1468 1.6108 44 1 9.7814 7.0435 -1.9585 45 1 10.7756 5.5934 -2.2356 46 1 9.0495 5.4257 -1.8348 47 1 12.2468 5.4296 3.5517 48 1 13.3975 5.5960 2.2041 49 1 15.2090 6.9773 5.0978 50 1 9.4533 4.6824 3.6978 51 1 10.1417 6.2708 4.1122 52 1 8.5048 6.1631 3.4212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816977213.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:17 Heat of formation + Delta-G solvation = -18.366573 kcal Electronic energy + Delta-G solvation = -28524.121436 eV Core-core repulsion = 24525.392884 eV Total energy + Delta-G solvation = -3998.728552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.13439 -40.53905 -38.93386 -36.78808 -36.07390 -34.85821 -34.16868 -33.30833 -31.61050 -30.65102 -30.36925 -28.10372 -27.60895 -27.50668 -25.32523 -24.18789 -23.82625 -21.76398 -20.80989 -20.29491 -20.12801 -19.07359 -18.81080 -18.00610 -17.25384 -17.01305 -16.40713 -16.21464 -16.07809 -15.68435 -15.54816 -15.26031 -14.74727 -14.67833 -14.53818 -14.36991 -14.05840 -13.98485 -13.81409 -13.55267 -13.38827 -13.22775 -13.20890 -13.11952 -12.91211 -12.85340 -12.74432 -12.65507 -12.61171 -12.55750 -12.21752 -11.95610 -11.86703 -11.82910 -11.70720 -11.58949 -11.44782 -11.14641 -10.93892 -10.74415 -9.89281 -9.81379 -9.02248 -8.34530 -6.52159 0.90264 1.20924 1.35721 1.37058 1.48332 1.65885 1.95429 1.97618 2.33466 2.94929 3.42206 3.71631 3.81408 3.85353 3.90887 3.96607 4.10376 4.23621 4.25890 4.34580 4.35777 4.38239 4.56951 4.62258 4.63685 4.69846 4.72569 4.75349 4.78144 4.80367 4.82442 4.87634 4.90127 4.97589 5.05817 5.08050 5.10831 5.17675 5.18638 5.19504 5.33489 5.41850 5.45268 5.50562 5.51145 5.58509 5.81189 5.83848 6.07375 6.33204 6.36871 6.63578 7.13938 7.19414 7.33437 8.71248 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.001729 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.444386 B =16187.121272 C =16635.493893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.084 4.084 4 H 0.070 0.930 5 C -0.148 4.148 6 C 0.031 3.969 7 O -0.176 6.176 8 N -0.591 5.591 9 C 0.527 3.473 10 O -0.573 6.573 11 C -0.109 4.109 12 C -0.005 4.005 13 C -0.257 4.257 14 C 0.055 3.945 15 C -0.063 4.063 16 N -0.350 5.350 17 N -0.355 5.355 18 C 0.275 3.725 19 C -0.554 4.554 20 H 0.046 0.954 21 C 0.024 3.976 22 N -0.917 5.917 23 Si 0.969 3.031 24 H -0.264 1.264 25 H -0.273 1.273 26 H -0.277 1.277 27 C 0.081 3.919 28 C -0.088 4.088 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.425 0.575 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.099 0.901 47 H 0.048 0.952 48 H 0.020 0.980 49 H 0.273 0.727 50 H 0.095 0.905 51 H 0.057 0.943 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.485 -16.526 -8.909 30.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.104 4.104 4 H 0.088 0.912 5 C -0.205 4.205 6 C -0.045 4.045 7 O -0.181 6.181 8 N -0.294 5.294 9 C 0.316 3.684 10 O -0.451 6.451 11 C -0.149 4.149 12 C -0.044 4.044 13 C -0.269 4.269 14 C -0.110 4.110 15 C -0.122 4.122 16 N -0.173 5.173 17 N -0.135 5.135 18 C 0.156 3.844 19 C -0.593 4.593 20 H 0.065 0.935 21 C -0.178 4.178 22 N -0.555 5.555 23 Si 0.793 3.207 24 H -0.189 1.189 25 H -0.198 1.198 26 H -0.202 1.202 27 C -0.049 4.049 28 C -0.146 4.146 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.268 0.732 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.118 0.882 47 H 0.066 0.934 48 H 0.038 0.962 49 H 0.083 0.917 50 H 0.114 0.886 51 H 0.076 0.924 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -23.556 -15.599 -8.931 29.631 hybrid contribution 0.178 0.352 0.654 0.763 sum -23.379 -15.247 -8.277 29.113 Atomic orbital electron populations 1.21817 0.95043 1.02284 1.02072 1.21478 0.96592 0.93664 1.03122 1.21147 0.91543 0.98296 0.99374 0.91176 1.21854 1.02011 0.99943 0.96667 1.23316 0.95985 0.82821 1.02418 1.90583 1.03048 1.27939 1.96493 1.47641 0.95442 1.09756 1.76552 1.21463 0.91010 0.81112 0.74798 1.90711 1.65285 1.37840 1.51230 1.21621 0.86935 0.99559 1.06834 1.19377 0.87574 0.94550 1.02946 1.19638 0.96627 1.20417 0.90220 1.22794 0.89943 0.99775 0.98483 1.20219 1.02771 1.03408 0.85791 1.77214 1.23867 1.27038 0.89214 1.49001 1.06549 1.53557 1.04413 1.19120 0.82653 0.97420 0.85194 1.21448 1.18376 0.92467 1.26975 0.93542 1.25715 0.94600 1.02301 0.95143 1.69996 1.21001 1.33917 1.30614 0.85389 0.77965 0.78693 0.78643 1.18906 1.19791 1.20233 1.21459 0.84415 1.00488 0.98551 1.20502 1.01321 1.03853 0.88960 0.92950 0.92302 0.91734 0.90744 0.90962 0.91887 0.91376 0.94204 0.90665 0.90606 0.73223 0.86664 0.86158 0.90945 0.91609 0.90492 0.91076 0.88194 0.93427 0.96224 0.91744 0.88640 0.92377 0.88286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 71.98 0.70 -0.41 16 2 C -0.11 -0.79 5.40 30.59 0.17 -0.62 16 3 C -0.08 -0.94 2.63 -10.79 -0.03 -0.97 16 4 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 5 C -0.15 -1.85 8.85 71.98 0.64 -1.22 16 6 C 0.03 0.37 5.61 71.98 0.40 0.77 16 7 O -0.18 -3.65 10.64 -21.39 -0.23 -3.88 16 8 N -0.59 -10.23 6.39 -173.54 -1.11 -11.34 16 9 C 0.53 12.03 7.97 87.66 0.70 12.73 16 10 O -0.57 -18.99 16.39 14.38 0.24 -18.75 16 11 C -0.11 -2.03 5.68 29.85 0.17 -1.86 16 12 C -0.01 -0.14 4.45 29.85 0.13 -0.01 16 13 C -0.26 -8.62 5.35 -20.14 -0.11 -8.73 16 14 C 0.05 2.00 7.22 43.10 0.31 2.31 16 15 C -0.06 -1.63 10.12 71.24 0.72 -0.91 16 16 N -0.35 -16.17 12.58 -47.38 -0.60 -16.76 16 17 N -0.36 -16.79 3.60 -338.40 -1.22 -18.01 16 18 C 0.28 14.64 5.81 85.63 0.50 15.14 16 19 C -0.55 -31.54 9.39 25.60 0.24 -31.30 16 20 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 21 C 0.02 1.30 5.46 84.65 0.46 1.76 16 22 N -0.92 -52.16 13.29 21.45 0.28 -51.87 16 23 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 27 C 0.08 3.12 6.93 41.41 0.29 3.40 16 28 C -0.09 -2.77 9.68 71.24 0.69 -2.08 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.43 6.56 -2.39 -0.02 0.41 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.72 6.56 -2.39 -0.02 0.71 16 36 H 0.04 0.70 7.82 -2.39 -0.02 0.68 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.64 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.42 3.77 8.54 -92.71 -0.79 2.97 16 40 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 1.90 7.88 -2.39 -0.02 1.88 16 43 H 0.07 1.80 7.09 -2.39 -0.02 1.78 16 44 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.10 1.91 7.92 -2.39 -0.02 1.89 16 47 H 0.05 2.50 7.68 -2.39 -0.02 2.48 16 48 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 50 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 51 H 0.06 2.11 7.74 -2.38 -0.02 2.09 16 52 H 0.10 2.60 7.14 -2.39 -0.02 2.59 16 Total: -1.00 -77.04 429.01 5.48 -71.56 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.11 Total: 15.35 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 5.98 Total: -11.99 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -2.64 Total: -97.98 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: 0.01 Total: -22.63 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -77.04 5.48 -71.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816977213.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.198 kcal (2) G-P(sol) polarization free energy of solvation -77.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds