Wall clock time and date at job start Tue Mar 31 2020 20:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47360 * 2 1 4 4 H 1.09004 * 109.47330 * 54.39111 * 3 2 1 5 5 N 1.46905 * 109.46883 * 294.39599 * 3 2 1 6 6 C 1.46902 * 111.00058 * 108.36699 * 5 3 2 7 7 C 1.50699 * 109.47356 * 174.60547 * 6 5 3 8 8 O 1.21282 * 119.99861 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99974 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99989 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47148 * 270.00268 * 10 9 7 12 12 H 1.08003 * 120.00186 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99970 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99878 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 119.99951 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47397 * 90.00088 * 15 13 11 17 17 H 1.48504 * 109.47085 * 209.99920 * 15 13 11 18 18 H 1.48502 * 109.47599 * 330.00179 * 15 13 11 19 19 C 1.46502 * 120.00060 * 0.02562 * 9 7 6 20 20 C 1.53001 * 109.47385 * 89.99566 * 19 9 7 21 21 C 1.47200 * 109.47136 * 179.97438 * 20 19 9 22 22 N 7.86690 * 63.37856 * 14.51229 * 2 1 3 23 23 C 1.52996 * 109.47448 * 174.39679 * 3 2 1 24 24 H 1.08995 * 109.52659 * 305.00085 * 23 3 2 25 25 C 1.53176 * 109.52556 * 184.87170 * 23 3 2 26 26 C 1.53174 * 109.03990 * 183.11565 * 25 23 3 27 27 C 1.53083 * 109.16403 * 56.98146 * 26 25 23 28 28 O 1.42910 * 109.41526 * 302.39413 * 27 26 25 29 29 C 1.42908 * 114.15269 * 61.12377 * 28 27 26 30 30 H 1.09004 * 109.47041 * 183.86881 * 1 2 3 31 31 H 1.08995 * 109.46944 * 303.87233 * 1 2 3 32 32 H 1.08998 * 109.46852 * 63.87357 * 1 2 3 33 33 H 1.08998 * 109.47000 * 239.99918 * 2 1 3 34 34 H 1.09002 * 109.47496 * 120.00019 * 2 1 3 35 35 H 1.00894 * 111.00141 * 344.41929 * 5 3 2 36 36 H 1.09004 * 109.47107 * 54.60377 * 6 5 3 37 37 H 1.08997 * 109.47372 * 294.61355 * 6 5 3 38 38 H 1.08994 * 109.46728 * 30.00045 * 10 9 7 39 39 H 1.08994 * 109.46816 * 149.99860 * 10 9 7 40 40 H 0.96997 * 119.99798 * 180.02562 * 14 13 11 41 41 H 1.08997 * 109.46758 * 209.99628 * 19 9 7 42 42 H 1.09003 * 109.46815 * 329.99767 * 19 9 7 43 43 H 1.09001 * 109.47051 * 300.00261 * 20 19 9 44 44 H 1.09008 * 109.46796 * 59.99838 * 20 19 9 45 45 H 1.09007 * 109.54594 * 302.98598 * 25 23 3 46 46 H 1.09007 * 109.54109 * 63.15782 * 25 23 3 47 47 H 1.09001 * 109.52427 * 176.88783 * 26 25 23 48 48 H 1.09000 * 109.51998 * 297.07814 * 26 25 23 49 49 H 1.09005 * 109.48658 * 62.37404 * 27 26 25 50 50 H 1.09003 * 109.48511 * 182.39697 * 27 26 25 51 51 H 1.09004 * 109.53223 * 178.92891 * 29 28 27 52 52 H 1.08999 * 109.42719 * 58.89321 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5971 1.9845 0.8355 5 7 1.6639 2.0948 -1.2614 6 6 0.6035 3.0880 -1.0447 7 6 0.3373 3.8274 -2.3305 8 8 0.9685 3.5536 -3.3293 9 7 -0.6021 4.7930 -2.3706 10 6 -0.8613 5.5115 -3.6207 11 6 0.0289 6.7250 -3.6965 12 1 0.7185 6.9399 -2.8936 13 6 -0.0369 7.5610 -4.7910 14 7 -0.8762 7.2991 -5.7690 15 14 1.0661 9.0656 -4.8846 16 1 2.3429 8.7028 -5.5504 17 1 0.3859 10.1302 -5.6653 18 1 1.3464 9.5602 -3.5127 19 6 -1.3642 5.1241 -1.1639 20 6 -0.6354 6.2213 -0.3855 21 6 -1.4014 6.5544 0.8266 22 7 -1.9951 6.8085 1.7624 23 6 3.5635 1.4447 0.1408 24 1 3.8480 0.8838 1.0310 25 6 4.0642 2.8872 0.2632 26 6 5.5947 2.8814 0.3251 27 6 6.1452 2.1789 -0.9186 28 8 5.6165 0.8531 -0.9886 29 6 4.1925 0.7963 -1.0951 30 1 -0.3633 -1.0254 0.0693 31 1 -0.3633 0.5727 0.8532 32 1 -0.3633 0.4525 -0.9227 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.3857 1.4137 -1.9518 36 1 0.9193 3.7951 -0.2775 37 1 -0.3065 2.5831 -0.7207 38 1 -0.6542 4.8556 -4.4663 39 1 -1.9051 5.8240 -3.6504 40 1 -0.9222 7.8870 -6.5391 41 1 -2.3562 5.4766 -1.4461 42 1 -1.4582 4.2363 -0.5386 43 1 0.3567 5.8689 -0.1034 44 1 -0.5413 7.1092 -1.0109 45 1 3.7365 3.4617 -0.6033 46 1 3.6628 3.3366 1.1716 47 1 5.9619 3.9072 0.3566 48 1 5.9210 2.3491 1.2185 49 1 5.8524 2.7344 -1.8096 50 1 7.2327 2.1341 -0.8594 51 1 3.8733 -0.2438 -1.1622 52 1 3.8742 1.3328 -1.9889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880465870.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:33 Heat of formation + Delta-G solvation = -69.124182 kcal Electronic energy + Delta-G solvation = -30754.753061 eV Core-core repulsion = 26753.823493 eV Total energy + Delta-G solvation = -4000.929568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.94000 -39.14729 -37.27646 -36.71637 -35.19495 -33.42029 -32.94017 -32.26828 -31.14336 -30.76639 -28.15786 -26.61501 -25.04385 -24.95252 -23.84796 -23.04403 -22.41118 -20.80543 -19.78962 -18.56393 -17.59504 -16.63709 -16.41118 -16.28370 -16.09564 -15.99583 -15.48856 -15.11837 -14.72412 -14.60851 -14.42002 -14.32756 -14.12061 -13.71043 -13.44336 -13.25100 -13.13676 -12.99719 -12.61989 -12.48616 -12.39929 -12.39534 -12.15098 -11.97518 -11.82563 -11.57292 -11.37897 -11.26865 -11.19987 -11.14883 -11.01860 -10.96537 -10.82793 -10.61824 -10.49507 -10.18772 -10.17214 -9.68333 -9.42766 -9.00988 -8.48955 -8.29223 -7.85477 -6.10689 -4.15646 2.78869 2.88660 3.27835 3.29807 3.34828 3.37403 3.57657 3.90067 4.08906 4.33237 4.43012 4.44661 4.68122 4.84193 4.89291 4.94405 4.98535 4.99005 5.03404 5.11426 5.20310 5.25127 5.30420 5.33444 5.37056 5.41970 5.45477 5.50338 5.57103 5.64009 5.67630 5.72180 5.79595 5.85088 5.92056 5.93322 5.96869 6.00251 6.04076 6.12902 6.15908 6.44416 6.80352 7.03334 7.24279 7.35277 7.38000 7.42520 7.65058 7.84948 8.14759 8.26306 8.82905 8.99644 9.50144 10.97463 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008952 B = 0.003600 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.106391 B = 7776.370898 C = 8909.641127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.149 4.149 3 C 0.093 3.907 4 H 0.072 0.928 5 N -0.662 5.662 6 C 0.037 3.963 7 C 0.506 3.494 8 O -0.517 6.517 9 N -0.600 5.600 10 C 0.246 3.754 11 C -0.528 4.528 12 H 0.060 0.940 13 C 0.063 3.937 14 N -0.893 5.893 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.124 3.876 20 C -0.054 4.054 21 C 0.218 3.782 22 N -0.453 5.453 23 C -0.104 4.104 24 H 0.071 0.929 25 C -0.114 4.114 26 C -0.154 4.154 27 C 0.061 3.939 28 O -0.390 6.390 29 C 0.066 3.934 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.351 0.649 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.045 0.955 39 H 0.033 0.967 40 H 0.264 0.736 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.131 0.869 45 H 0.083 0.917 46 H 0.057 0.943 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.054 0.946 50 H 0.086 0.914 51 H 0.084 0.916 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.696 -12.586 13.241 19.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.188 4.188 3 C -0.018 4.018 4 H 0.091 0.909 5 N -0.295 5.295 6 C -0.095 4.095 7 C 0.292 3.708 8 O -0.392 6.392 9 N -0.333 5.333 10 C 0.127 3.873 11 C -0.566 4.566 12 H 0.078 0.922 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.003 4.003 20 C -0.095 4.095 21 C -0.099 4.099 22 N -0.131 5.131 23 C -0.123 4.123 24 H 0.089 0.911 25 C -0.152 4.152 26 C -0.192 4.192 27 C -0.016 4.016 28 O -0.309 6.309 29 C -0.011 4.011 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.171 0.829 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.089 0.911 43 H 0.122 0.878 44 H 0.149 0.851 45 H 0.101 0.899 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.082 0.918 49 H 0.072 0.928 50 H 0.104 0.896 51 H 0.102 0.898 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.691 -11.982 13.908 19.219 hybrid contribution -0.171 0.678 -0.201 0.727 sum 5.520 -11.304 13.707 18.605 Atomic orbital electron populations 1.21853 0.95721 1.01962 1.01904 1.22195 0.96138 0.97517 1.02917 1.21623 0.94748 0.93060 0.92327 0.90948 1.60134 1.41552 1.18795 1.09013 1.22073 0.94170 0.95988 0.97288 1.20245 0.80083 0.80714 0.89765 1.90700 1.46889 1.65557 1.36022 1.48244 1.36913 1.36454 1.11711 1.19339 0.96505 0.91417 0.80059 1.21408 1.21812 1.08295 1.05114 0.92173 1.24916 0.95480 0.98108 0.95400 1.69919 1.36332 1.38292 1.08589 0.86562 0.80790 0.82290 0.78148 1.20559 1.21262 1.19867 1.21242 0.95885 0.96119 0.87016 1.20011 0.97511 1.03834 0.88128 1.29346 0.93534 0.92797 0.94248 1.81227 1.10033 1.09621 1.12196 1.21751 0.94391 0.97190 0.99007 0.91069 1.21572 0.94289 0.96443 1.02857 1.22169 0.96966 1.01016 0.99053 1.22536 0.98133 0.83834 0.97095 1.87866 1.21369 1.27046 1.94603 1.22645 0.79957 1.00738 0.97759 0.92484 0.92689 0.92590 0.91124 0.91255 0.82920 0.88799 0.92842 0.93704 0.94897 0.92678 0.89551 0.91131 0.87762 0.85127 0.89861 0.92409 0.91164 0.91782 0.92802 0.89560 0.89817 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.10 37.16 0.34 -0.84 16 2 C -0.15 -1.13 4.83 -26.73 -0.13 -1.26 16 3 C 0.09 0.82 1.88 -67.72 -0.13 0.69 16 4 H 0.07 0.62 7.50 -51.93 -0.39 0.23 16 5 N -0.66 -7.49 4.00 -107.99 -0.43 -7.92 16 6 C 0.04 0.44 4.21 -4.98 -0.02 0.42 16 7 C 0.51 8.71 7.72 -10.98 -0.08 8.63 16 8 O -0.52 -11.42 15.90 5.56 0.09 -11.33 16 9 N -0.60 -10.40 2.46 -175.06 -0.43 -10.83 16 10 C 0.25 5.64 5.20 -5.19 -0.03 5.61 16 11 C -0.53 -13.27 8.92 -34.44 -0.31 -13.58 16 12 H 0.06 1.47 7.42 -52.48 -0.39 1.08 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -25.02 13.29 55.43 0.74 -24.29 16 15 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 C 0.12 1.56 5.21 -4.04 -0.02 1.54 16 20 C -0.05 -0.64 6.03 -29.52 -0.18 -0.81 16 21 C 0.22 2.80 15.44 -20.73 -0.32 2.48 16 22 N -0.45 -6.88 18.54 42.19 0.78 -6.09 16 23 C -0.10 -1.00 2.21 -90.48 -0.20 -1.20 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 C -0.11 -1.18 5.23 -26.55 -0.14 -1.32 16 26 C -0.15 -1.51 6.14 -26.60 -0.16 -1.67 16 27 C 0.06 0.66 6.84 37.20 0.25 0.91 16 28 O -0.39 -4.85 10.76 -35.23 -0.38 -5.23 16 29 C 0.07 0.72 5.66 37.20 0.21 0.93 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.47 6.67 -51.93 -0.35 0.12 16 33 H 0.07 0.55 6.82 -51.93 -0.35 0.19 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.35 4.17 7.55 -39.30 -0.30 3.87 16 36 H 0.09 0.98 7.05 -51.93 -0.37 0.61 16 37 H 0.05 0.53 6.09 -51.93 -0.32 0.21 16 38 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 39 H 0.03 0.77 7.89 -51.93 -0.41 0.36 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.09 1.09 7.89 -51.93 -0.41 0.68 16 42 H 0.07 0.69 6.44 -51.93 -0.33 0.35 16 43 H 0.10 1.08 7.22 -51.93 -0.37 0.70 16 44 H 0.13 1.81 7.26 -51.92 -0.38 1.43 16 45 H 0.08 1.05 7.68 -51.93 -0.40 0.65 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.08 0.82 6.83 -51.93 -0.35 0.46 16 52 H 0.07 0.91 7.39 -51.93 -0.38 0.52 16 LS Contribution 412.63 15.07 6.22 6.22 Total: -1.00 -31.17 412.63 -8.28 -39.45 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -8.83 Total: 2.34 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.01 Total: 2.13 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.66 Total: -49.13 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.29 Total: -16.56 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.17 -8.28 -39.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880465870.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.675 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds