Wall clock time and date at job start Tue Mar 31 2020 20:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47360 * 2 1 4 4 H 1.09004 * 109.47330 * 54.39111 * 3 2 1 5 5 N 1.46905 * 109.46883 * 294.39599 * 3 2 1 6 6 C 1.46902 * 111.00058 * 108.36699 * 5 3 2 7 7 C 1.50699 * 109.47356 * 174.60547 * 6 5 3 8 8 O 1.21282 * 119.99861 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99974 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99989 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47148 * 270.00268 * 10 9 7 12 12 H 1.08003 * 120.00186 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99970 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99878 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 119.99951 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47397 * 90.00088 * 15 13 11 17 17 H 1.48504 * 109.47085 * 209.99920 * 15 13 11 18 18 H 1.48502 * 109.47599 * 330.00179 * 15 13 11 19 19 C 1.46502 * 120.00060 * 0.02562 * 9 7 6 20 20 C 1.53001 * 109.47385 * 89.99566 * 19 9 7 21 21 C 1.47200 * 109.47136 * 179.97438 * 20 19 9 22 22 N 7.86690 * 63.37856 * 14.51229 * 2 1 3 23 23 C 1.52996 * 109.47448 * 174.39679 * 3 2 1 24 24 H 1.08995 * 109.52659 * 305.00085 * 23 3 2 25 25 C 1.53176 * 109.52556 * 184.87170 * 23 3 2 26 26 C 1.53174 * 109.03990 * 183.11565 * 25 23 3 27 27 C 1.53083 * 109.16403 * 56.98146 * 26 25 23 28 28 O 1.42910 * 109.41526 * 302.39413 * 27 26 25 29 29 C 1.42908 * 114.15269 * 61.12377 * 28 27 26 30 30 H 1.09004 * 109.47041 * 183.86881 * 1 2 3 31 31 H 1.08995 * 109.46944 * 303.87233 * 1 2 3 32 32 H 1.08998 * 109.46852 * 63.87357 * 1 2 3 33 33 H 1.08998 * 109.47000 * 239.99918 * 2 1 3 34 34 H 1.09002 * 109.47496 * 120.00019 * 2 1 3 35 35 H 1.00894 * 111.00141 * 344.41929 * 5 3 2 36 36 H 1.09004 * 109.47107 * 54.60377 * 6 5 3 37 37 H 1.08997 * 109.47372 * 294.61355 * 6 5 3 38 38 H 1.08994 * 109.46728 * 30.00045 * 10 9 7 39 39 H 1.08994 * 109.46816 * 149.99860 * 10 9 7 40 40 H 0.96997 * 119.99798 * 180.02562 * 14 13 11 41 41 H 1.08997 * 109.46758 * 209.99628 * 19 9 7 42 42 H 1.09003 * 109.46815 * 329.99767 * 19 9 7 43 43 H 1.09001 * 109.47051 * 300.00261 * 20 19 9 44 44 H 1.09008 * 109.46796 * 59.99838 * 20 19 9 45 45 H 1.09007 * 109.54594 * 302.98598 * 25 23 3 46 46 H 1.09007 * 109.54109 * 63.15782 * 25 23 3 47 47 H 1.09001 * 109.52427 * 176.88783 * 26 25 23 48 48 H 1.09000 * 109.51998 * 297.07814 * 26 25 23 49 49 H 1.09005 * 109.48658 * 62.37404 * 27 26 25 50 50 H 1.09003 * 109.48511 * 182.39697 * 27 26 25 51 51 H 1.09004 * 109.53223 * 178.92891 * 29 28 27 52 52 H 1.08999 * 109.42719 * 58.89321 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5971 1.9845 0.8355 5 7 1.6639 2.0948 -1.2614 6 6 0.6035 3.0880 -1.0447 7 6 0.3373 3.8274 -2.3305 8 8 0.9685 3.5536 -3.3293 9 7 -0.6021 4.7930 -2.3706 10 6 -0.8613 5.5115 -3.6207 11 6 0.0289 6.7250 -3.6965 12 1 0.7185 6.9399 -2.8936 13 6 -0.0369 7.5610 -4.7910 14 7 -0.8762 7.2991 -5.7690 15 14 1.0661 9.0656 -4.8846 16 1 2.3429 8.7028 -5.5504 17 1 0.3859 10.1302 -5.6653 18 1 1.3464 9.5602 -3.5127 19 6 -1.3642 5.1241 -1.1639 20 6 -0.6354 6.2213 -0.3855 21 6 -1.4014 6.5544 0.8266 22 7 -1.9951 6.8085 1.7624 23 6 3.5635 1.4447 0.1408 24 1 3.8480 0.8838 1.0310 25 6 4.0642 2.8872 0.2632 26 6 5.5947 2.8814 0.3251 27 6 6.1452 2.1789 -0.9186 28 8 5.6165 0.8531 -0.9886 29 6 4.1925 0.7963 -1.0951 30 1 -0.3633 -1.0254 0.0693 31 1 -0.3633 0.5727 0.8532 32 1 -0.3633 0.4525 -0.9227 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.3857 1.4137 -1.9518 36 1 0.9193 3.7951 -0.2775 37 1 -0.3065 2.5831 -0.7207 38 1 -0.6542 4.8556 -4.4663 39 1 -1.9051 5.8240 -3.6504 40 1 -0.9222 7.8870 -6.5391 41 1 -2.3562 5.4766 -1.4461 42 1 -1.4582 4.2363 -0.5386 43 1 0.3567 5.8689 -0.1034 44 1 -0.5413 7.1092 -1.0109 45 1 3.7365 3.4617 -0.6033 46 1 3.6628 3.3366 1.1716 47 1 5.9619 3.9072 0.3566 48 1 5.9210 2.3491 1.2185 49 1 5.8524 2.7344 -1.8096 50 1 7.2327 2.1341 -0.8594 51 1 3.8733 -0.2438 -1.1622 52 1 3.8742 1.3328 -1.9889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880465870.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:32 Heat of formation + Delta-G solvation = -88.298812 kcal Electronic energy + Delta-G solvation = -30755.584535 eV Core-core repulsion = 26753.823493 eV Total energy + Delta-G solvation = -4001.761042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.94332 -40.31059 -38.17364 -37.83570 -36.58820 -34.80402 -34.22613 -33.20151 -32.05359 -31.88211 -29.68123 -27.75537 -26.05590 -25.84472 -25.12583 -24.08020 -23.65545 -21.53064 -20.60998 -19.84689 -18.96362 -18.04355 -17.73983 -17.41462 -16.98016 -16.96597 -16.73753 -16.19713 -15.91218 -15.61836 -15.59682 -15.39249 -15.11136 -14.70902 -14.46310 -14.37859 -14.08893 -13.93080 -13.90442 -13.56932 -13.49487 -13.43362 -13.24876 -13.13328 -13.00971 -12.72786 -12.70337 -12.53665 -12.50494 -12.13613 -12.00424 -11.97288 -11.83080 -11.79818 -11.74650 -11.53871 -11.25825 -10.99910 -10.54099 -10.45826 -10.24473 -9.42139 -9.12591 -8.12522 -6.23827 1.43619 1.46528 1.53956 1.70842 1.85480 2.02518 2.29154 2.48260 3.06334 3.10320 3.19907 3.39013 3.74214 3.85745 3.96021 4.07565 4.09206 4.16229 4.19811 4.27787 4.30842 4.32144 4.40906 4.48652 4.53196 4.64653 4.68365 4.71817 4.82581 4.86310 4.89208 4.92037 5.03658 5.09748 5.10984 5.16715 5.18109 5.18447 5.22136 5.27508 5.32640 5.39066 5.43815 5.62060 5.68691 5.92209 6.14142 6.17750 6.37013 6.48748 6.62467 6.83693 6.90223 7.41885 7.63398 8.94748 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008952 B = 0.003600 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.106391 B = 7776.370898 C = 8909.641127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.144 4.144 3 C 0.099 3.901 4 H 0.088 0.912 5 N -0.677 5.677 6 C 0.052 3.948 7 C 0.501 3.499 8 O -0.576 6.576 9 N -0.601 5.601 10 C 0.260 3.740 11 C -0.526 4.526 12 H 0.068 0.932 13 C 0.009 3.991 14 N -0.931 5.931 15 Si 0.953 3.047 16 H -0.287 1.287 17 H -0.286 1.286 18 H -0.255 1.255 19 C 0.120 3.880 20 C -0.042 4.042 21 C 0.247 3.753 22 N -0.489 5.489 23 C -0.098 4.098 24 H 0.084 0.916 25 C -0.113 4.113 26 C -0.151 4.151 27 C 0.056 3.944 28 O -0.407 6.407 29 C 0.066 3.934 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.345 0.655 36 H 0.118 0.882 37 H 0.083 0.917 38 H -0.003 1.003 39 H 0.025 0.975 40 H 0.262 0.738 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.129 0.871 44 H 0.113 0.887 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.036 0.964 50 H 0.101 0.899 51 H 0.094 0.906 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.175 -12.926 16.499 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.183 4.183 3 C -0.011 4.011 4 H 0.106 0.894 5 N -0.310 5.310 6 C -0.079 4.079 7 C 0.289 3.711 8 O -0.454 6.454 9 N -0.333 5.333 10 C 0.139 3.861 11 C -0.565 4.565 12 H 0.086 0.914 13 C -0.190 4.190 14 N -0.572 5.572 15 Si 0.779 3.221 16 H -0.213 1.213 17 H -0.212 1.212 18 H -0.179 1.179 19 C -0.005 4.005 20 C -0.084 4.084 21 C -0.070 4.070 22 N -0.167 5.167 23 C -0.117 4.117 24 H 0.102 0.898 25 C -0.151 4.151 26 C -0.188 4.188 27 C -0.021 4.021 28 O -0.326 6.326 29 C -0.011 4.011 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.164 0.836 36 H 0.136 0.864 37 H 0.101 0.899 38 H 0.015 0.985 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.130 0.870 43 H 0.146 0.854 44 H 0.131 0.869 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.055 0.945 50 H 0.119 0.881 51 H 0.112 0.888 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.157 -12.320 17.233 22.060 hybrid contribution -0.304 0.722 -1.250 1.475 sum 5.853 -11.598 15.982 20.596 Atomic orbital electron populations 1.21836 0.95448 1.02377 1.01615 1.22140 0.96280 0.96582 1.03253 1.21628 0.94156 0.93859 0.91416 0.89419 1.60086 1.41593 1.19067 1.10246 1.22012 0.95776 0.96153 0.94001 1.21272 0.78667 0.80081 0.91050 1.90678 1.48979 1.67141 1.38624 1.48117 1.37633 1.36089 1.11436 1.18773 0.95537 0.90271 0.81551 1.21773 1.21431 1.08403 1.04856 0.91428 1.25733 0.96830 1.01067 0.95354 1.70045 1.38265 1.39560 1.09315 0.85621 0.78495 0.79111 0.78847 1.21323 1.21164 1.17898 1.21511 0.95158 0.98237 0.85602 1.19891 0.98415 1.02794 0.87257 1.29223 0.92490 0.91696 0.93608 1.81275 1.11202 1.10736 1.13507 1.21719 0.94827 0.96702 0.98468 0.89825 1.21548 0.94674 0.96575 1.02272 1.22142 0.96675 1.01371 0.98628 1.22649 0.99079 0.83262 0.97104 1.87838 1.22136 1.27931 1.94684 1.22659 0.79543 1.01210 0.97646 0.92025 0.91812 0.93725 0.91726 0.89972 0.83570 0.86439 0.89921 0.98476 0.95715 0.92879 0.89619 0.87014 0.85355 0.86903 0.92471 0.90946 0.90477 0.90802 0.94512 0.88113 0.88802 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.10 71.98 0.66 -1.22 16 2 C -0.14 -1.78 4.83 30.59 0.15 -1.64 16 3 C 0.10 1.47 1.88 44.91 0.08 1.55 16 4 H 0.09 1.09 7.50 -2.39 -0.02 1.07 16 5 N -0.68 -14.30 4.00 -495.57 -1.98 -16.28 16 6 C 0.05 1.09 4.21 85.56 0.36 1.45 16 7 C 0.50 16.95 7.72 87.66 0.68 17.63 16 8 O -0.58 -26.28 15.90 -3.03 -0.05 -26.33 16 9 N -0.60 -20.45 2.46 -826.15 -2.03 -22.48 16 10 C 0.26 12.30 5.20 85.63 0.45 12.75 16 11 C -0.53 -26.76 8.92 25.60 0.23 -26.53 16 12 H 0.07 3.26 7.42 -2.91 -0.02 3.24 16 13 C 0.01 0.47 5.46 84.66 0.46 0.93 16 14 N -0.93 -53.79 13.29 21.45 0.28 -53.50 16 15 Si 0.95 42.44 29.54 68.60 2.03 44.46 16 16 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 18 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 19 C 0.12 2.71 5.21 86.38 0.45 3.16 16 20 C -0.04 -0.88 6.03 28.79 0.17 -0.71 16 21 C 0.25 5.62 15.44 89.43 1.38 7.00 16 22 N -0.49 -13.68 18.54 20.02 0.37 -13.31 16 23 C -0.10 -1.66 2.21 -10.71 -0.02 -1.68 16 24 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 25 C -0.11 -2.10 5.23 30.71 0.16 -1.94 16 26 C -0.15 -2.67 6.14 30.68 0.19 -2.48 16 27 C 0.06 1.17 6.84 72.01 0.49 1.66 16 28 O -0.41 -9.88 10.76 -148.98 -1.60 -11.48 16 29 C 0.07 1.40 5.66 72.01 0.41 1.81 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.04 0.64 6.67 -2.39 -0.02 0.63 16 33 H 0.06 0.89 6.82 -2.39 -0.02 0.87 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.34 8.04 7.55 -89.70 -0.68 7.36 16 36 H 0.12 1.93 7.05 -2.38 -0.02 1.91 16 37 H 0.08 1.28 6.09 -2.39 -0.01 1.26 16 38 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 39 H 0.02 1.20 7.89 -2.39 -0.02 1.18 16 40 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 41 H 0.09 2.00 7.89 -2.39 -0.02 1.98 16 42 H 0.11 1.67 6.44 -2.39 -0.02 1.66 16 43 H 0.13 2.12 7.22 -2.39 -0.02 2.11 16 44 H 0.11 2.91 7.26 -2.38 -0.02 2.89 16 45 H 0.06 1.38 7.68 -2.38 -0.02 1.36 16 46 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 47 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 50 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.09 1.75 6.83 -2.38 -0.02 1.74 16 52 H 0.05 1.21 7.39 -2.39 -0.02 1.19 16 Total: -1.00 -71.23 412.63 3.54 -67.68 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.24 Total: 19.50 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 6.29 Total: 11.75 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -3.36 Total: -105.57 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -1.65 Total: -37.81 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -71.23 3.54 -67.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880465870.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.618 kcal (2) G-P(sol) polarization free energy of solvation -71.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds