Wall clock time and date at job start Tue Mar 31 2020 20:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47314 * 2 1 4 4 H 1.08996 * 109.47741 * 183.22964 * 3 2 1 5 5 N 1.46903 * 109.46859 * 63.23311 * 3 2 1 6 6 C 1.46898 * 111.00083 * 83.70644 * 5 3 2 7 7 C 1.50701 * 109.47158 * 176.26652 * 6 5 3 8 8 O 1.21278 * 120.00184 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99987 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00028 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.47266 * 270.00761 * 10 9 7 12 12 H 1.08001 * 120.00397 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00016 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99561 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00080 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47005 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46808 * 120.00214 * 15 13 11 18 18 H 1.48493 * 109.47211 * 239.99703 * 15 13 11 19 19 C 1.46496 * 119.99940 * 0.02562 * 9 7 6 20 20 C 1.53004 * 109.47644 * 89.99417 * 19 9 7 21 21 C 1.47199 * 109.47515 * 179.97438 * 20 19 9 22 22 N 7.37045 * 142.10337 * 79.20803 * 2 1 3 23 23 C 1.52998 * 109.47181 * 303.23674 * 3 2 1 24 24 H 1.09002 * 109.52183 * 59.87041 * 23 3 2 25 25 C 1.53174 * 109.52597 * 179.97438 * 23 3 2 26 26 C 1.53179 * 109.04170 * 176.88374 * 25 23 3 27 27 C 1.53093 * 109.16084 * 303.02275 * 26 25 23 28 28 O 1.42904 * 109.41446 * 57.60575 * 27 26 25 29 29 C 1.42904 * 114.09788 * 298.83996 * 28 27 26 30 30 H 1.09000 * 109.47438 * 299.20831 * 1 2 3 31 31 H 1.08998 * 109.47182 * 59.21305 * 1 2 3 32 32 H 1.09010 * 109.47053 * 179.20949 * 1 2 3 33 33 H 1.09007 * 109.47381 * 240.00328 * 2 1 3 34 34 H 1.08999 * 109.47211 * 120.00358 * 2 1 3 35 35 H 1.00900 * 111.00342 * 319.74731 * 5 3 2 36 36 H 1.09000 * 109.46978 * 56.27087 * 6 5 3 37 37 H 1.08995 * 109.47133 * 296.27105 * 6 5 3 38 38 H 1.08998 * 109.46747 * 30.00841 * 10 9 7 39 39 H 1.08998 * 109.47115 * 150.00726 * 10 9 7 40 40 H 0.97003 * 119.99874 * 179.97438 * 14 13 11 41 41 H 1.08997 * 109.47419 * 329.99036 * 19 9 7 42 42 H 1.09000 * 109.47028 * 209.99285 * 19 9 7 43 43 H 1.09000 * 109.46800 * 300.00008 * 20 19 9 44 44 H 1.08998 * 109.46836 * 59.99896 * 20 19 9 45 45 H 1.09004 * 109.54384 * 296.75372 * 25 23 3 46 46 H 1.09007 * 109.54295 * 57.01898 * 25 23 3 47 47 H 1.08998 * 109.51882 * 62.92450 * 26 25 23 48 48 H 1.08998 * 109.52248 * 183.05209 * 26 25 23 49 49 H 1.08999 * 109.47896 * 177.58479 * 27 26 25 50 50 H 1.08995 * 109.48058 * 297.61079 * 27 26 25 51 51 H 1.09003 * 109.47799 * 301.17575 * 29 28 27 52 52 H 1.09002 * 109.47894 * 181.14263 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1284 1.4431 -0.0579 5 7 1.6151 2.1120 1.2366 6 6 2.5418 1.8201 2.3384 7 6 2.1266 2.5947 3.5626 8 8 1.1542 3.3183 3.5215 9 7 2.8352 2.4826 4.7035 10 6 2.4313 3.2352 5.8937 11 6 3.1169 4.5771 5.8962 12 1 3.7870 4.8428 5.0920 13 6 2.8897 5.4655 6.9260 14 7 2.0741 5.1419 7.9056 15 14 3.7401 7.1287 6.9295 16 1 4.5995 7.2477 5.7243 17 1 2.7189 8.2068 6.9172 18 1 4.5774 7.2539 8.1494 19 6 4.0095 1.6081 4.7534 20 6 5.2554 2.4039 4.3589 21 6 6.4353 1.5254 4.4097 22 7 7.3461 0.8477 4.4471 23 6 1.4646 2.1869 -1.2065 24 1 0.3760 2.1849 -1.1505 25 6 1.9740 3.6314 -1.2074 26 6 1.4548 4.3436 -2.4602 27 6 1.9042 3.5684 -3.7015 28 8 1.4231 2.2251 -3.6225 29 6 1.9135 1.4949 -2.4962 30 1 -0.3634 0.5015 0.8970 31 1 -0.3633 0.5260 -0.8828 32 1 -0.3634 -1.0277 -0.0142 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 0.6705 1.8549 1.4809 36 1 3.5520 2.1105 2.0501 37 1 2.5195 0.7529 2.5588 38 1 1.3509 3.3792 5.8831 39 1 2.7151 2.6805 6.7880 40 1 1.9145 5.7667 8.6303 41 1 3.8741 0.7780 4.0602 42 1 4.1312 1.2206 5.7649 43 1 5.1337 2.7915 3.3474 44 1 5.3908 3.2340 5.0522 45 1 1.6107 4.1467 -0.3181 46 1 3.0640 3.6337 -1.2120 47 1 0.3660 4.3849 -2.4309 48 1 1.8569 5.3561 -2.4966 49 1 1.5015 4.0467 -4.5943 50 1 2.9929 3.5624 -3.7519 51 1 3.0025 1.4617 -2.5308 52 1 1.5177 0.4797 -2.5208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880465875.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:36 Heat of formation + Delta-G solvation = -67.140230 kcal Electronic energy + Delta-G solvation = -30355.712384 eV Core-core repulsion = 26354.868847 eV Total energy + Delta-G solvation = -4000.843537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.06047 -39.23092 -37.41366 -36.74158 -35.20487 -33.46249 -32.98028 -32.49472 -30.78739 -30.76307 -28.23525 -26.55228 -25.47178 -24.53177 -23.86849 -23.60555 -22.42982 -20.64958 -19.78256 -18.58302 -17.60255 -16.77768 -16.52046 -16.30258 -16.18602 -16.07664 -15.36303 -15.00716 -14.85727 -14.60978 -14.54119 -14.36427 -14.21761 -13.81019 -13.61005 -13.34063 -13.09551 -12.98907 -12.66662 -12.51603 -12.39618 -12.27997 -12.15092 -12.04641 -11.93018 -11.61523 -11.45856 -11.28176 -11.20398 -11.09672 -10.97829 -10.83550 -10.82928 -10.62304 -10.56553 -10.31033 -10.17691 -9.66166 -9.56960 -9.03365 -8.49205 -8.30728 -7.85190 -6.10595 -4.15446 2.79947 2.89714 3.26583 3.30172 3.35758 3.38534 3.54889 3.69820 4.06983 4.32014 4.42746 4.48829 4.66094 4.78428 4.83565 4.87052 4.96861 4.98386 4.98997 5.11215 5.12669 5.20378 5.25362 5.26766 5.29778 5.33641 5.40590 5.45718 5.47325 5.55441 5.59257 5.63761 5.73887 5.77760 5.88354 5.92266 5.92873 5.95871 6.09922 6.16271 6.29197 6.39060 6.80873 6.98846 7.06730 7.35824 7.39854 7.43059 7.65495 7.85314 8.15013 8.26431 8.83320 8.99785 9.50353 10.97573 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.003018 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.492881 B = 9276.919931 C =10110.395082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.160 4.160 3 C 0.094 3.906 4 H 0.078 0.922 5 N -0.662 5.662 6 C 0.038 3.962 7 C 0.507 3.493 8 O -0.518 6.518 9 N -0.600 5.600 10 C 0.245 3.755 11 C -0.527 4.527 12 H 0.061 0.939 13 C 0.063 3.937 14 N -0.893 5.893 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.284 1.284 19 C 0.124 3.876 20 C -0.054 4.054 21 C 0.219 3.781 22 N -0.453 5.453 23 C -0.110 4.110 24 H 0.084 0.916 25 C -0.109 4.109 26 C -0.158 4.158 27 C 0.059 3.941 28 O -0.384 6.384 29 C 0.064 3.936 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.351 0.649 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.045 0.955 39 H 0.033 0.967 40 H 0.263 0.737 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.131 0.869 45 H 0.088 0.912 46 H 0.056 0.944 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.089 0.911 50 H 0.047 0.953 51 H 0.048 0.952 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.281 -9.041 -18.535 20.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.199 4.199 3 C -0.016 4.016 4 H 0.096 0.904 5 N -0.295 5.295 6 C -0.095 4.095 7 C 0.292 3.708 8 O -0.392 6.392 9 N -0.333 5.333 10 C 0.126 3.874 11 C -0.566 4.566 12 H 0.079 0.921 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.211 1.211 19 C -0.003 4.003 20 C -0.095 4.095 21 C -0.099 4.099 22 N -0.131 5.131 23 C -0.129 4.129 24 H 0.102 0.898 25 C -0.147 4.147 26 C -0.196 4.196 27 C -0.017 4.017 28 O -0.303 6.303 29 C -0.013 4.013 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.173 0.827 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.123 0.877 44 H 0.149 0.851 45 H 0.106 0.894 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.107 0.893 50 H 0.066 0.934 51 H 0.066 0.934 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.179 -9.052 -18.587 20.708 hybrid contribution 0.243 0.487 0.626 0.829 sum 1.421 -8.566 -17.961 19.950 Atomic orbital electron populations 1.21861 0.95426 1.01795 1.02489 1.22275 0.97060 0.98157 1.02373 1.21562 0.99468 0.90505 0.90114 0.90377 1.60173 1.06172 1.61335 1.01859 1.21967 0.98220 0.97941 0.91329 1.20224 0.83958 0.82828 0.83754 1.90698 1.27119 1.38371 1.83047 1.48238 1.26452 1.45224 1.13395 1.19346 0.97474 0.90369 0.80163 1.21457 1.27328 1.00352 1.07465 0.92078 1.24928 0.95200 0.98418 0.95432 1.69933 1.35797 1.36318 1.11083 0.86499 0.79372 0.84058 0.77836 1.19694 1.20921 1.21062 1.21244 0.84243 0.91736 1.03053 1.20012 0.86538 0.96928 1.06033 1.29298 0.94410 0.93642 0.92534 1.81181 1.11603 1.10622 1.09680 1.21773 1.01895 0.95860 0.93378 0.89810 1.21522 1.00058 0.94789 0.98296 1.22222 1.02086 0.99617 0.95626 1.22591 0.98113 0.82725 0.98301 1.87921 1.71903 1.24662 1.45795 1.22677 0.98042 0.95311 0.85253 0.92384 0.91833 0.92705 0.91347 0.91894 0.82702 0.88738 0.93008 0.93700 0.94872 0.92735 0.91102 0.89537 0.87730 0.85132 0.89373 0.92511 0.91195 0.91041 0.89300 0.93435 0.93410 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.26 37.15 0.34 -0.94 16 2 C -0.16 -1.24 5.35 -26.74 -0.14 -1.38 16 3 C 0.09 0.85 1.92 -67.71 -0.13 0.72 16 4 H 0.08 0.68 7.76 -51.93 -0.40 0.28 16 5 N -0.66 -7.89 5.11 -108.00 -0.55 -8.44 16 6 C 0.04 0.46 4.53 -4.98 -0.02 0.44 16 7 C 0.51 8.91 7.72 -10.99 -0.08 8.83 16 8 O -0.52 -11.64 15.86 5.56 0.09 -11.55 16 9 N -0.60 -10.55 2.46 -175.06 -0.43 -10.98 16 10 C 0.25 5.68 5.20 -5.20 -0.03 5.65 16 11 C -0.53 -13.36 8.92 -34.44 -0.31 -13.66 16 12 H 0.06 1.51 7.42 -52.49 -0.39 1.12 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 15 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C 0.12 1.58 5.21 -4.04 -0.02 1.56 16 20 C -0.05 -0.64 6.03 -29.52 -0.18 -0.82 16 21 C 0.22 2.81 15.43 -20.76 -0.32 2.49 16 22 N -0.45 -6.89 18.54 42.15 0.78 -6.11 16 23 C -0.11 -1.02 1.72 -90.49 -0.16 -1.18 16 24 H 0.08 0.86 6.35 -51.93 -0.33 0.53 16 25 C -0.11 -1.12 5.10 -26.55 -0.14 -1.26 16 26 C -0.16 -1.45 6.14 -26.59 -0.16 -1.61 16 27 C 0.06 0.52 6.84 37.21 0.25 0.77 16 28 O -0.38 -4.01 10.77 -35.23 -0.38 -4.39 16 29 C 0.06 0.56 5.71 37.20 0.21 0.77 16 30 H 0.06 0.53 6.40 -51.93 -0.33 0.19 16 31 H 0.06 0.52 6.32 -51.93 -0.33 0.19 16 32 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.07 0.46 6.68 -51.93 -0.35 0.11 16 34 H 0.06 0.50 7.36 -51.93 -0.38 0.12 16 35 H 0.35 4.45 6.33 -39.29 -0.25 4.20 16 36 H 0.09 1.01 7.01 -51.93 -0.36 0.64 16 37 H 0.05 0.53 6.65 -51.93 -0.35 0.18 16 38 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 39 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.07 0.70 6.44 -51.93 -0.33 0.36 16 42 H 0.09 1.10 7.89 -51.93 -0.41 0.69 16 43 H 0.10 1.09 7.22 -51.93 -0.38 0.72 16 44 H 0.13 1.81 7.26 -51.93 -0.38 1.43 16 45 H 0.09 1.11 7.72 -51.93 -0.40 0.71 16 46 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 52 H 0.09 0.71 6.66 -51.93 -0.35 0.36 16 LS Contribution 409.52 15.07 6.17 6.17 Total: -1.00 -31.50 409.52 -8.18 -39.68 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -8.60 Total: 2.40 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -0.97 Total: 1.95 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.54 Total: -49.89 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.29 Total: -15.94 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.50 -8.18 -39.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880465875.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.459 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds