Wall clock time and date at job start Tue Mar 31 2020 20:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47314 * 2 1 4 4 H 1.08996 * 109.47741 * 183.22964 * 3 2 1 5 5 N 1.46903 * 109.46859 * 63.23311 * 3 2 1 6 6 C 1.46898 * 111.00083 * 83.70644 * 5 3 2 7 7 C 1.50701 * 109.47158 * 176.26652 * 6 5 3 8 8 O 1.21278 * 120.00184 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99987 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00028 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.47266 * 270.00761 * 10 9 7 12 12 H 1.08001 * 120.00397 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00016 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99561 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00080 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47005 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46808 * 120.00214 * 15 13 11 18 18 H 1.48493 * 109.47211 * 239.99703 * 15 13 11 19 19 C 1.46496 * 119.99940 * 0.02562 * 9 7 6 20 20 C 1.53004 * 109.47644 * 89.99417 * 19 9 7 21 21 C 1.47199 * 109.47515 * 179.97438 * 20 19 9 22 22 N 7.37045 * 142.10337 * 79.20803 * 2 1 3 23 23 C 1.52998 * 109.47181 * 303.23674 * 3 2 1 24 24 H 1.09002 * 109.52183 * 59.87041 * 23 3 2 25 25 C 1.53174 * 109.52597 * 179.97438 * 23 3 2 26 26 C 1.53179 * 109.04170 * 176.88374 * 25 23 3 27 27 C 1.53093 * 109.16084 * 303.02275 * 26 25 23 28 28 O 1.42904 * 109.41446 * 57.60575 * 27 26 25 29 29 C 1.42904 * 114.09788 * 298.83996 * 28 27 26 30 30 H 1.09000 * 109.47438 * 299.20831 * 1 2 3 31 31 H 1.08998 * 109.47182 * 59.21305 * 1 2 3 32 32 H 1.09010 * 109.47053 * 179.20949 * 1 2 3 33 33 H 1.09007 * 109.47381 * 240.00328 * 2 1 3 34 34 H 1.08999 * 109.47211 * 120.00358 * 2 1 3 35 35 H 1.00900 * 111.00342 * 319.74731 * 5 3 2 36 36 H 1.09000 * 109.46978 * 56.27087 * 6 5 3 37 37 H 1.08995 * 109.47133 * 296.27105 * 6 5 3 38 38 H 1.08998 * 109.46747 * 30.00841 * 10 9 7 39 39 H 1.08998 * 109.47115 * 150.00726 * 10 9 7 40 40 H 0.97003 * 119.99874 * 179.97438 * 14 13 11 41 41 H 1.08997 * 109.47419 * 329.99036 * 19 9 7 42 42 H 1.09000 * 109.47028 * 209.99285 * 19 9 7 43 43 H 1.09000 * 109.46800 * 300.00008 * 20 19 9 44 44 H 1.08998 * 109.46836 * 59.99896 * 20 19 9 45 45 H 1.09004 * 109.54384 * 296.75372 * 25 23 3 46 46 H 1.09007 * 109.54295 * 57.01898 * 25 23 3 47 47 H 1.08998 * 109.51882 * 62.92450 * 26 25 23 48 48 H 1.08998 * 109.52248 * 183.05209 * 26 25 23 49 49 H 1.08999 * 109.47896 * 177.58479 * 27 26 25 50 50 H 1.08995 * 109.48058 * 297.61079 * 27 26 25 51 51 H 1.09003 * 109.47799 * 301.17575 * 29 28 27 52 52 H 1.09002 * 109.47894 * 181.14263 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1284 1.4431 -0.0579 5 7 1.6151 2.1120 1.2366 6 6 2.5418 1.8201 2.3384 7 6 2.1266 2.5947 3.5626 8 8 1.1542 3.3183 3.5215 9 7 2.8352 2.4826 4.7035 10 6 2.4313 3.2352 5.8937 11 6 3.1169 4.5771 5.8962 12 1 3.7870 4.8428 5.0920 13 6 2.8897 5.4655 6.9260 14 7 2.0741 5.1419 7.9056 15 14 3.7401 7.1287 6.9295 16 1 4.5995 7.2477 5.7243 17 1 2.7189 8.2068 6.9172 18 1 4.5774 7.2539 8.1494 19 6 4.0095 1.6081 4.7534 20 6 5.2554 2.4039 4.3589 21 6 6.4353 1.5254 4.4097 22 7 7.3461 0.8477 4.4471 23 6 1.4646 2.1869 -1.2065 24 1 0.3760 2.1849 -1.1505 25 6 1.9740 3.6314 -1.2074 26 6 1.4548 4.3436 -2.4602 27 6 1.9042 3.5684 -3.7015 28 8 1.4231 2.2251 -3.6225 29 6 1.9135 1.4949 -2.4962 30 1 -0.3634 0.5015 0.8970 31 1 -0.3633 0.5260 -0.8828 32 1 -0.3634 -1.0277 -0.0142 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 0.6705 1.8549 1.4809 36 1 3.5520 2.1105 2.0501 37 1 2.5195 0.7529 2.5588 38 1 1.3509 3.3792 5.8831 39 1 2.7151 2.6805 6.7880 40 1 1.9145 5.7667 8.6303 41 1 3.8741 0.7780 4.0602 42 1 4.1312 1.2206 5.7649 43 1 5.1337 2.7915 3.3474 44 1 5.3908 3.2340 5.0522 45 1 1.6107 4.1467 -0.3181 46 1 3.0640 3.6337 -1.2120 47 1 0.3660 4.3849 -2.4309 48 1 1.8569 5.3561 -2.4966 49 1 1.5015 4.0467 -4.5943 50 1 2.9929 3.5624 -3.7519 51 1 3.0025 1.4617 -2.5308 52 1 1.5177 0.4797 -2.5208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880465875.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:35 Heat of formation + Delta-G solvation = -87.083471 kcal Electronic energy + Delta-G solvation = -30356.577188 eV Core-core repulsion = 26354.868847 eV Total energy + Delta-G solvation = -4001.708341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.96861 -40.40528 -38.25601 -37.87393 -36.60962 -34.82299 -34.21369 -33.47219 -32.06402 -31.45159 -29.75467 -27.75079 -26.30272 -25.41818 -25.12975 -24.43327 -23.88216 -21.39361 -20.53867 -19.85377 -18.96921 -18.09419 -17.79851 -17.46786 -17.03342 -16.97492 -16.68020 -16.12564 -15.85111 -15.69055 -15.51874 -15.39122 -15.23234 -14.73149 -14.62343 -14.38866 -14.30725 -13.93633 -13.81855 -13.58606 -13.49726 -13.44592 -13.29851 -13.14694 -12.90955 -12.77382 -12.72436 -12.68428 -12.49994 -12.18132 -12.10100 -11.95941 -11.76038 -11.72219 -11.53753 -11.51402 -11.29007 -11.01676 -10.55010 -10.49108 -10.28622 -9.43414 -9.16873 -8.13112 -6.24483 1.42690 1.46092 1.55539 1.71187 1.86389 2.01132 2.27730 2.47734 2.99895 3.11277 3.19269 3.35446 3.77603 3.84660 3.96953 4.07144 4.09120 4.13371 4.20378 4.25596 4.27635 4.30783 4.39765 4.45518 4.49430 4.59031 4.62981 4.67390 4.78835 4.81656 4.87177 4.89383 4.92564 5.04359 5.09529 5.13358 5.17781 5.19251 5.22254 5.30117 5.38098 5.42362 5.53709 5.54829 5.68292 5.91550 6.13556 6.17140 6.33856 6.46323 6.62720 6.82812 6.89257 7.41090 7.61607 8.94363 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.003018 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.492881 B = 9276.919931 C =10110.395082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.154 4.154 3 C 0.099 3.901 4 H 0.092 0.908 5 N -0.681 5.681 6 C 0.052 3.948 7 C 0.500 3.500 8 O -0.577 6.577 9 N -0.601 5.601 10 C 0.260 3.740 11 C -0.526 4.526 12 H 0.068 0.932 13 C 0.007 3.993 14 N -0.931 5.931 15 Si 0.955 3.045 16 H -0.259 1.259 17 H -0.291 1.291 18 H -0.278 1.278 19 C 0.119 3.881 20 C -0.043 4.043 21 C 0.247 3.753 22 N -0.489 5.489 23 C -0.104 4.104 24 H 0.068 0.932 25 C -0.107 4.107 26 C -0.156 4.156 27 C 0.059 3.941 28 O -0.403 6.403 29 C 0.066 3.934 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.344 0.656 36 H 0.120 0.880 37 H 0.083 0.917 38 H -0.003 1.003 39 H 0.025 0.975 40 H 0.262 0.738 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.129 0.871 44 H 0.113 0.887 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.077 0.923 49 H 0.100 0.900 50 H 0.058 0.942 51 H 0.060 0.940 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.430 -10.203 -20.685 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.193 4.193 3 C -0.011 4.011 4 H 0.110 0.890 5 N -0.313 5.313 6 C -0.080 4.080 7 C 0.289 3.711 8 O -0.456 6.456 9 N -0.332 5.332 10 C 0.139 3.861 11 C -0.565 4.565 12 H 0.086 0.914 13 C -0.191 4.191 14 N -0.572 5.572 15 Si 0.781 3.219 16 H -0.183 1.183 17 H -0.217 1.217 18 H -0.204 1.204 19 C -0.005 4.005 20 C -0.084 4.084 21 C -0.070 4.070 22 N -0.167 5.167 23 C -0.124 4.124 24 H 0.086 0.914 25 C -0.145 4.145 26 C -0.194 4.194 27 C -0.017 4.017 28 O -0.322 6.322 29 C -0.011 4.011 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.165 0.835 36 H 0.138 0.862 37 H 0.101 0.899 38 H 0.015 0.985 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.131 0.869 42 H 0.104 0.896 43 H 0.147 0.853 44 H 0.131 0.869 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.096 0.904 49 H 0.118 0.882 50 H 0.077 0.923 51 H 0.078 0.922 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.379 -10.252 -20.764 23.402 hybrid contribution -0.488 0.839 1.282 1.608 sum 2.891 -9.413 -19.482 21.829 Atomic orbital electron populations 1.21843 0.96105 1.01980 1.01569 1.22235 0.96380 0.97208 1.03432 1.21586 1.00124 0.90966 0.88419 0.88995 1.60148 1.05857 1.62615 1.02721 1.21919 0.99024 0.98450 0.88614 1.21260 0.82751 0.82222 0.84870 1.90674 1.29696 1.41113 1.84106 1.48115 1.28004 1.45188 1.11929 1.18781 0.94446 0.90574 0.82347 1.21815 1.26620 1.01080 1.07003 0.91372 1.25757 0.95999 1.01951 0.95400 1.70058 1.37603 1.37577 1.11954 0.85541 0.78291 0.79625 0.78429 1.18292 1.21743 1.20371 1.21522 0.82570 0.91913 1.04537 1.19890 0.85614 0.95926 1.06953 1.29169 0.93806 0.92710 0.91278 1.81229 1.12671 1.11784 1.11041 1.21705 1.00969 0.95431 0.94255 0.91351 1.21461 1.00273 0.95349 0.97418 1.22203 1.01350 1.00116 0.95740 1.22677 0.98791 0.82053 0.98217 1.87900 1.72476 1.25386 1.46429 1.22752 0.98770 0.95470 0.84119 0.93906 0.92215 0.91923 0.89612 0.91390 0.83549 0.86176 0.89910 0.98502 0.95663 0.92862 0.86943 0.89583 0.85317 0.86881 0.92331 0.91916 0.92377 0.90411 0.88170 0.92338 0.92160 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.26 71.98 0.67 -1.66 16 2 C -0.15 -1.92 5.35 30.59 0.16 -1.75 16 3 C 0.10 1.53 1.92 44.91 0.09 1.61 16 4 H 0.09 1.21 7.76 -2.39 -0.02 1.20 16 5 N -0.68 -15.22 5.11 -495.59 -2.53 -17.76 16 6 C 0.05 1.11 4.53 85.56 0.39 1.50 16 7 C 0.50 17.28 7.72 87.66 0.68 17.95 16 8 O -0.58 -26.80 15.86 -3.02 -0.05 -26.84 16 9 N -0.60 -20.68 2.46 -826.17 -2.03 -22.71 16 10 C 0.26 12.37 5.20 85.63 0.45 12.81 16 11 C -0.53 -26.94 8.92 25.60 0.23 -26.71 16 12 H 0.07 3.31 7.42 -2.91 -0.02 3.29 16 13 C 0.01 0.40 5.46 84.66 0.46 0.86 16 14 N -0.93 -53.89 13.29 21.45 0.28 -53.61 16 15 Si 0.96 42.55 29.54 68.60 2.03 44.58 16 16 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 17 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 19 C 0.12 2.73 5.21 86.38 0.45 3.18 16 20 C -0.04 -0.89 6.03 28.79 0.17 -0.72 16 21 C 0.25 5.64 15.43 89.44 1.38 7.02 16 22 N -0.49 -13.69 18.54 20.00 0.37 -13.32 16 23 C -0.10 -1.78 1.72 -10.71 -0.02 -1.80 16 24 H 0.07 1.39 6.35 -2.39 -0.02 1.37 16 25 C -0.11 -2.11 5.10 30.71 0.16 -1.95 16 26 C -0.16 -2.76 6.14 30.69 0.19 -2.57 16 27 C 0.06 0.92 6.84 72.01 0.49 1.41 16 28 O -0.40 -7.64 10.77 -148.98 -1.60 -9.24 16 29 C 0.07 0.97 5.71 72.01 0.41 1.38 16 30 H 0.04 0.76 6.40 -2.39 -0.02 0.75 16 31 H 0.06 0.92 6.32 -2.39 -0.02 0.90 16 32 H 0.06 0.81 8.14 -2.38 -0.02 0.80 16 33 H 0.09 0.81 6.68 -2.38 -0.02 0.80 16 34 H 0.07 0.81 7.36 -2.39 -0.02 0.80 16 35 H 0.34 8.64 6.33 -89.69 -0.57 8.07 16 36 H 0.12 2.00 7.01 -2.39 -0.02 1.98 16 37 H 0.08 1.31 6.65 -2.39 -0.02 1.29 16 38 H 0.00 -0.18 7.42 -2.39 -0.02 -0.20 16 39 H 0.03 1.23 7.89 -2.39 -0.02 1.21 16 40 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 41 H 0.11 1.70 6.44 -2.39 -0.02 1.68 16 42 H 0.09 2.02 7.89 -2.39 -0.02 2.00 16 43 H 0.13 2.14 7.22 -2.39 -0.02 2.12 16 44 H 0.11 2.91 7.26 -2.39 -0.02 2.89 16 45 H 0.06 1.50 7.72 -2.38 -0.02 1.48 16 46 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 49 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.10 1.28 6.66 -2.39 -0.02 1.26 16 Total: -1.00 -71.88 409.52 3.18 -68.71 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.35 Total: 19.62 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 6.35 Total: 10.58 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -3.90 Total: -107.39 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -1.65 Total: -36.09 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -71.88 3.18 -68.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880465875.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.375 kcal (2) G-P(sol) polarization free energy of solvation -71.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds