Wall clock time and date at job start Tue Mar 31 2020 20:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47138 * 2 1 4 4 H 1.09000 * 109.46669 * 302.64741 * 3 2 1 5 5 N 1.46895 * 109.46964 * 62.64656 * 3 2 1 6 6 C 1.46900 * 111.00109 * 56.53230 * 5 3 2 7 7 C 1.50698 * 109.47111 * 174.44549 * 6 5 3 8 8 O 1.21276 * 120.00432 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99796 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99806 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.46801 * 90.00017 * 10 9 7 12 12 H 1.07997 * 120.00596 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99834 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00187 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 120.00252 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47063 * 89.99653 * 15 13 11 17 17 H 1.48500 * 109.47189 * 210.00100 * 15 13 11 18 18 H 1.48502 * 109.46662 * 330.00076 * 15 13 11 19 19 C 1.46495 * 120.00188 * 359.97438 * 9 7 6 20 20 C 1.52992 * 109.47371 * 89.99792 * 19 9 7 21 21 C 1.47199 * 109.47386 * 180.02562 * 20 19 9 22 22 N 6.71213 * 125.84036 * 107.76155 * 2 1 3 23 23 C 1.52999 * 109.47054 * 182.64813 * 3 2 1 24 24 H 1.08999 * 109.57190 * 300.15669 * 23 3 2 25 25 C 1.53177 * 109.52386 * 180.02562 * 23 3 2 26 26 C 1.53170 * 109.11033 * 183.07198 * 25 23 3 27 27 C 1.53281 * 109.06863 * 56.93928 * 26 25 23 28 28 O 1.42900 * 109.45897 * 302.44599 * 27 26 25 29 29 C 1.42905 * 114.09744 * 61.15644 * 28 27 26 30 30 H 1.09005 * 109.47295 * 53.86053 * 1 2 3 31 31 H 1.08998 * 109.47404 * 173.85831 * 1 2 3 32 32 H 1.08999 * 109.47144 * 293.86396 * 1 2 3 33 33 H 1.09005 * 109.47235 * 239.99733 * 2 1 3 34 34 H 1.09002 * 109.47338 * 119.99836 * 2 1 3 35 35 H 1.00901 * 111.00449 * 292.57023 * 5 3 2 36 36 H 1.09004 * 109.46624 * 294.44475 * 6 5 3 37 37 H 1.08993 * 109.47354 * 54.44220 * 6 5 3 38 38 H 1.08999 * 109.47136 * 210.00002 * 10 9 7 39 39 H 1.09001 * 109.46907 * 330.00340 * 10 9 7 40 40 H 0.96997 * 120.00146 * 180.02562 * 14 13 11 41 41 H 1.08994 * 109.47398 * 210.00264 * 19 9 7 42 42 H 1.09008 * 109.46822 * 330.00176 * 19 9 7 43 43 H 1.09002 * 109.47141 * 300.00243 * 20 19 9 44 44 H 1.09000 * 109.47032 * 60.00162 * 20 19 9 45 45 H 1.09004 * 109.53848 * 302.97680 * 25 23 3 46 46 H 1.09002 * 109.54445 * 63.15184 * 25 23 3 47 47 H 1.09003 * 109.52484 * 176.93087 * 26 25 23 48 48 H 1.09000 * 109.52537 * 297.11215 * 26 25 23 49 49 H 1.08995 * 109.45771 * 182.45153 * 27 26 25 50 50 H 1.08998 * 109.46774 * 62.44734 * 27 26 25 51 51 H 1.09002 * 109.48213 * 178.85790 * 29 28 27 52 52 H 1.08995 * 109.47931 * 58.82763 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6384 1.9698 -0.8653 5 7 1.6032 2.1163 1.2301 6 6 2.0578 1.3854 2.4205 7 6 1.7110 2.1739 3.6570 8 8 1.1417 3.2400 3.5565 9 7 2.0336 1.6943 4.8746 10 6 1.6970 2.4612 6.0767 11 6 0.3268 2.0614 6.5601 12 1 -0.2371 1.3115 6.0254 13 6 -0.2070 2.6531 7.6853 14 7 -1.4026 2.3038 8.1076 15 14 0.7679 3.9508 8.6100 16 1 0.4532 5.2930 8.0581 17 1 0.4054 3.9099 10.0495 18 1 2.2202 3.6809 8.4574 19 6 2.7208 0.4063 4.9961 20 6 4.2339 0.6306 4.9659 21 6 4.9244 -0.6637 5.0873 22 7 5.4601 -1.6599 5.1818 23 6 3.5685 1.4430 -0.0666 24 1 3.9718 0.9136 0.7966 25 6 4.0805 2.8867 -0.0661 26 6 5.6054 2.8781 -0.2103 27 6 5.9829 2.1263 -1.4917 28 8 5.4501 0.8013 -1.4408 29 6 4.0248 0.7485 -1.3525 30 1 -0.3634 0.6061 -0.8300 31 1 -0.3634 -1.0217 -0.1099 32 1 -0.3633 0.4158 0.9398 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.6015 2.2367 1.2403 36 1 1.5662 0.4133 2.4597 37 1 3.1375 1.2447 2.3702 38 1 2.4313 2.2565 6.8557 39 1 1.7032 3.5257 5.8421 40 1 -1.7782 2.7204 8.8989 41 1 2.4424 -0.0667 5.9377 42 1 2.4325 -0.2390 4.1662 43 1 4.5123 1.1036 4.0241 44 1 4.5222 1.2758 5.7957 45 1 3.6384 3.4306 -0.9009 46 1 3.8055 3.3707 0.8711 47 1 5.9719 3.9031 -0.2655 48 1 6.0498 2.3773 0.6497 49 1 7.0683 2.0786 -1.5782 50 1 5.5721 2.6503 -2.3547 51 1 3.6997 -0.2918 -1.3387 52 1 3.5883 1.2546 -2.2135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880465877.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:38 Heat of formation + Delta-G solvation = -61.369060 kcal Electronic energy + Delta-G solvation = -30860.135777 eV Core-core repulsion = 26859.542497 eV Total energy + Delta-G solvation = -4000.593280 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.21404 -39.26520 -37.50855 -36.87843 -35.30630 -33.51302 -32.89801 -32.14558 -31.25639 -31.01494 -28.66442 -26.79477 -25.61240 -24.62840 -24.03197 -23.14423 -22.32402 -20.54904 -19.86322 -18.57469 -17.77509 -17.15681 -16.82507 -16.63534 -16.20037 -15.90969 -15.49947 -15.04293 -14.79303 -14.71927 -14.56064 -14.41515 -14.37517 -13.87014 -13.64052 -13.47802 -13.10997 -12.96536 -12.73770 -12.58130 -12.50637 -12.44153 -12.41239 -12.08622 -11.94244 -11.68236 -11.66593 -11.59138 -11.28174 -11.09856 -11.06699 -10.92553 -10.86860 -10.57457 -10.54101 -10.37722 -10.22168 -9.64430 -9.60666 -9.12605 -8.63539 -8.34828 -7.90059 -6.13316 -4.12858 2.67820 2.76410 3.24771 3.25771 3.31051 3.33615 3.46370 3.62643 3.97326 4.27021 4.35233 4.38507 4.58954 4.74401 4.79982 4.83323 4.87808 4.91627 4.92311 5.01849 5.05294 5.06447 5.20774 5.21203 5.26215 5.29231 5.36392 5.38435 5.42361 5.51872 5.52950 5.58657 5.71755 5.72710 5.76129 5.79667 5.88352 5.94936 6.00052 6.05178 6.19517 6.25483 6.55524 6.82018 6.92873 6.96489 7.21211 7.35756 7.51883 7.55064 8.10151 8.40804 8.86218 8.91587 9.46527 10.99950 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011439 B = 0.003306 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.142515 B = 8466.252226 C = 9153.684860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.166 4.166 3 C 0.096 3.904 4 H 0.086 0.914 5 N -0.660 5.660 6 C 0.032 3.968 7 C 0.509 3.491 8 O -0.517 6.517 9 N -0.595 5.595 10 C 0.216 3.784 11 C -0.531 4.531 12 H 0.074 0.926 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.875 3.125 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.265 1.265 19 C 0.118 3.882 20 C -0.051 4.051 21 C 0.215 3.785 22 N -0.441 5.441 23 C -0.115 4.115 24 H 0.078 0.922 25 C -0.108 4.108 26 C -0.158 4.158 27 C 0.059 3.941 28 O -0.383 6.383 29 C 0.064 3.936 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.354 0.646 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.031 0.969 39 H 0.039 0.961 40 H 0.265 0.735 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.060 0.940 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.089 0.911 50 H 0.048 0.952 51 H 0.093 0.907 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.806 -2.192 -18.752 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.206 4.206 3 C -0.015 4.015 4 H 0.104 0.896 5 N -0.292 5.292 6 C -0.100 4.100 7 C 0.295 3.705 8 O -0.392 6.392 9 N -0.327 5.327 10 C 0.095 3.905 11 C -0.569 4.569 12 H 0.092 0.908 13 C -0.130 4.130 14 N -0.535 5.535 15 Si 0.702 3.298 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.190 1.190 19 C -0.009 4.009 20 C -0.093 4.093 21 C -0.103 4.103 22 N -0.118 5.118 23 C -0.134 4.134 24 H 0.097 0.903 25 C -0.146 4.146 26 C -0.196 4.196 27 C -0.018 4.018 28 O -0.302 6.302 29 C -0.013 4.013 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.174 0.826 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.124 0.876 44 H 0.134 0.866 45 H 0.079 0.921 46 H 0.103 0.897 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.107 0.893 50 H 0.066 0.934 51 H 0.111 0.889 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.775 -2.750 -18.498 22.648 hybrid contribution -0.641 0.423 0.684 1.028 sum 12.134 -2.327 -17.814 21.679 Atomic orbital electron populations 1.21793 0.95375 1.02032 1.02177 1.22391 0.96720 0.98686 1.02764 1.21611 0.94108 0.92309 0.93468 0.89639 1.60205 1.20070 1.49362 0.99534 1.22006 1.02019 0.95866 0.90125 1.20289 0.79630 0.86532 0.84046 1.90694 1.40191 1.22284 1.85988 1.47880 1.57232 1.20385 1.07214 1.19699 0.96734 0.92530 0.81494 1.21301 1.00204 1.24211 1.11204 0.90762 1.24859 0.94776 0.96382 0.96941 1.69891 1.15955 1.42970 1.24652 0.86868 0.80803 0.82841 0.79261 1.19888 1.21149 1.18975 1.21310 0.87941 0.86917 1.04687 1.19901 0.95741 0.87629 1.06006 1.29015 0.93567 0.94724 0.93000 1.81178 1.09623 1.11902 1.09139 1.21845 0.94959 0.97611 0.99021 0.90328 1.21514 0.93668 0.95652 1.03765 1.22264 0.97535 1.00946 0.98852 1.22620 0.98877 0.83566 0.96695 1.87940 1.20650 1.27075 1.94522 1.22685 0.81156 1.01272 0.96169 0.92472 0.92500 0.92464 0.91326 0.91385 0.82551 0.92275 0.88606 0.95093 0.94263 0.92522 0.88559 0.90542 0.87582 0.86637 0.92139 0.89686 0.90964 0.91232 0.89262 0.93385 0.88883 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.48 37.16 0.35 -0.98 16 2 C -0.17 -1.33 4.77 -26.73 -0.13 -1.46 16 3 C 0.10 0.83 2.14 -67.71 -0.15 0.69 16 4 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 5 N -0.66 -7.62 5.15 -108.00 -0.56 -8.18 16 6 C 0.03 0.39 3.85 -4.98 -0.02 0.37 16 7 C 0.51 8.79 7.73 -10.98 -0.08 8.71 16 8 O -0.52 -11.36 15.90 5.56 0.09 -11.27 16 9 N -0.59 -10.23 2.46 -175.07 -0.43 -10.66 16 10 C 0.22 4.70 4.23 -5.19 -0.02 4.67 16 11 C -0.53 -14.21 9.94 -34.44 -0.34 -14.56 16 12 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 13 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 14 N -0.90 -26.73 13.96 55.43 0.77 -25.96 16 15 Si 0.88 20.55 27.47 -169.99 -4.67 15.89 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -5.74 6.54 56.52 0.37 -5.37 16 19 C 0.12 1.49 5.17 -4.05 -0.02 1.47 16 20 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 21 C 0.22 2.50 15.43 -20.79 -0.32 2.18 16 22 N -0.44 -6.33 18.53 42.12 0.78 -5.55 16 23 C -0.12 -0.99 1.70 -90.48 -0.15 -1.14 16 24 H 0.08 0.73 6.38 -51.93 -0.33 0.40 16 25 C -0.11 -0.99 5.10 -26.55 -0.14 -1.12 16 26 C -0.16 -1.29 6.15 -26.50 -0.16 -1.46 16 27 C 0.06 0.48 6.85 37.30 0.26 0.73 16 28 O -0.38 -3.86 10.77 -35.23 -0.38 -4.24 16 29 C 0.06 0.53 5.71 37.21 0.21 0.74 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.57 7.22 -51.93 -0.37 0.20 16 33 H 0.07 0.48 6.36 -51.93 -0.33 0.14 16 34 H 0.07 0.58 6.33 -51.93 -0.33 0.25 16 35 H 0.35 4.49 7.43 -39.29 -0.29 4.20 16 36 H 0.06 0.66 5.77 -51.93 -0.30 0.36 16 37 H 0.10 0.97 5.18 -51.93 -0.27 0.70 16 38 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 39 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 42 H 0.08 0.81 6.44 -51.92 -0.33 0.48 16 43 H 0.11 0.84 7.22 -51.93 -0.37 0.46 16 44 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.94 7.71 -51.93 -0.40 0.54 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.09 0.70 6.52 -51.93 -0.34 0.36 16 52 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 407.14 15.07 6.14 6.14 Total: -1.00 -33.44 407.14 -7.88 -41.33 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -8.64 Total: 2.42 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -0.99 Total: 0.09 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.57 Total: -50.35 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.29 Total: -15.51 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.89 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.44 -7.88 -41.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880465877.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.041 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds