Wall clock time and date at job start Tue Mar 31 2020 20:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47138 * 2 1 4 4 H 1.09000 * 109.46669 * 302.64741 * 3 2 1 5 5 N 1.46895 * 109.46964 * 62.64656 * 3 2 1 6 6 C 1.46900 * 111.00109 * 56.53230 * 5 3 2 7 7 C 1.50698 * 109.47111 * 174.44549 * 6 5 3 8 8 O 1.21276 * 120.00432 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99796 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99806 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.46801 * 90.00017 * 10 9 7 12 12 H 1.07997 * 120.00596 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99834 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00187 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 120.00252 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47063 * 89.99653 * 15 13 11 17 17 H 1.48500 * 109.47189 * 210.00100 * 15 13 11 18 18 H 1.48502 * 109.46662 * 330.00076 * 15 13 11 19 19 C 1.46495 * 120.00188 * 359.97438 * 9 7 6 20 20 C 1.52992 * 109.47371 * 89.99792 * 19 9 7 21 21 C 1.47199 * 109.47386 * 180.02562 * 20 19 9 22 22 N 6.71213 * 125.84036 * 107.76155 * 2 1 3 23 23 C 1.52999 * 109.47054 * 182.64813 * 3 2 1 24 24 H 1.08999 * 109.57190 * 300.15669 * 23 3 2 25 25 C 1.53177 * 109.52386 * 180.02562 * 23 3 2 26 26 C 1.53170 * 109.11033 * 183.07198 * 25 23 3 27 27 C 1.53281 * 109.06863 * 56.93928 * 26 25 23 28 28 O 1.42900 * 109.45897 * 302.44599 * 27 26 25 29 29 C 1.42905 * 114.09744 * 61.15644 * 28 27 26 30 30 H 1.09005 * 109.47295 * 53.86053 * 1 2 3 31 31 H 1.08998 * 109.47404 * 173.85831 * 1 2 3 32 32 H 1.08999 * 109.47144 * 293.86396 * 1 2 3 33 33 H 1.09005 * 109.47235 * 239.99733 * 2 1 3 34 34 H 1.09002 * 109.47338 * 119.99836 * 2 1 3 35 35 H 1.00901 * 111.00449 * 292.57023 * 5 3 2 36 36 H 1.09004 * 109.46624 * 294.44475 * 6 5 3 37 37 H 1.08993 * 109.47354 * 54.44220 * 6 5 3 38 38 H 1.08999 * 109.47136 * 210.00002 * 10 9 7 39 39 H 1.09001 * 109.46907 * 330.00340 * 10 9 7 40 40 H 0.96997 * 120.00146 * 180.02562 * 14 13 11 41 41 H 1.08994 * 109.47398 * 210.00264 * 19 9 7 42 42 H 1.09008 * 109.46822 * 330.00176 * 19 9 7 43 43 H 1.09002 * 109.47141 * 300.00243 * 20 19 9 44 44 H 1.09000 * 109.47032 * 60.00162 * 20 19 9 45 45 H 1.09004 * 109.53848 * 302.97680 * 25 23 3 46 46 H 1.09002 * 109.54445 * 63.15184 * 25 23 3 47 47 H 1.09003 * 109.52484 * 176.93087 * 26 25 23 48 48 H 1.09000 * 109.52537 * 297.11215 * 26 25 23 49 49 H 1.08995 * 109.45771 * 182.45153 * 27 26 25 50 50 H 1.08998 * 109.46774 * 62.44734 * 27 26 25 51 51 H 1.09002 * 109.48213 * 178.85790 * 29 28 27 52 52 H 1.08995 * 109.47931 * 58.82763 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6384 1.9698 -0.8653 5 7 1.6032 2.1163 1.2301 6 6 2.0578 1.3854 2.4205 7 6 1.7110 2.1739 3.6570 8 8 1.1417 3.2400 3.5565 9 7 2.0336 1.6943 4.8746 10 6 1.6970 2.4612 6.0767 11 6 0.3268 2.0614 6.5601 12 1 -0.2371 1.3115 6.0254 13 6 -0.2070 2.6531 7.6853 14 7 -1.4026 2.3038 8.1076 15 14 0.7679 3.9508 8.6100 16 1 0.4532 5.2930 8.0581 17 1 0.4054 3.9099 10.0495 18 1 2.2202 3.6809 8.4574 19 6 2.7208 0.4063 4.9961 20 6 4.2339 0.6306 4.9659 21 6 4.9244 -0.6637 5.0873 22 7 5.4601 -1.6599 5.1818 23 6 3.5685 1.4430 -0.0666 24 1 3.9718 0.9136 0.7966 25 6 4.0805 2.8867 -0.0661 26 6 5.6054 2.8781 -0.2103 27 6 5.9829 2.1263 -1.4917 28 8 5.4501 0.8013 -1.4408 29 6 4.0248 0.7485 -1.3525 30 1 -0.3634 0.6061 -0.8300 31 1 -0.3634 -1.0217 -0.1099 32 1 -0.3633 0.4158 0.9398 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.6015 2.2367 1.2403 36 1 1.5662 0.4133 2.4597 37 1 3.1375 1.2447 2.3702 38 1 2.4313 2.2565 6.8557 39 1 1.7032 3.5257 5.8421 40 1 -1.7782 2.7204 8.8989 41 1 2.4424 -0.0667 5.9377 42 1 2.4325 -0.2390 4.1662 43 1 4.5123 1.1036 4.0241 44 1 4.5222 1.2758 5.7957 45 1 3.6384 3.4306 -0.9009 46 1 3.8055 3.3707 0.8711 47 1 5.9719 3.9031 -0.2655 48 1 6.0498 2.3773 0.6497 49 1 7.0683 2.0786 -1.5782 50 1 5.5721 2.6503 -2.3547 51 1 3.6997 -0.2918 -1.3387 52 1 3.5883 1.2546 -2.2135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880465877.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:37 Heat of formation + Delta-G solvation = -84.078668 kcal Electronic energy + Delta-G solvation = -30861.120540 eV Core-core repulsion = 26859.542497 eV Total energy + Delta-G solvation = -4001.578043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.13492 -40.35182 -38.34138 -37.93362 -36.66090 -34.81560 -34.20098 -33.11751 -32.28409 -31.89614 -30.16848 -27.95823 -26.38583 -25.38980 -25.21893 -23.95686 -23.78830 -21.21542 -20.79395 -19.72549 -19.15276 -18.52983 -18.17171 -17.55693 -17.05175 -16.89437 -16.48948 -16.29560 -15.76662 -15.72832 -15.45654 -15.32746 -15.28106 -15.03980 -14.65222 -14.48026 -14.37040 -14.19356 -13.78757 -13.69312 -13.54523 -13.46305 -13.34061 -13.12534 -13.08683 -12.93820 -12.66526 -12.52102 -12.37456 -12.34834 -11.97352 -11.95216 -11.88313 -11.75387 -11.67804 -11.57113 -11.22065 -11.03995 -10.76317 -10.54930 -10.31320 -9.41914 -9.23857 -8.27249 -6.31499 1.39109 1.43238 1.50366 1.69596 1.85154 1.91272 2.24848 2.37151 3.00534 3.05255 3.11040 3.33433 3.69551 3.79526 3.94902 4.02165 4.07041 4.09358 4.14574 4.21110 4.24005 4.27746 4.31173 4.44573 4.46870 4.59017 4.63566 4.67349 4.74239 4.79956 4.81099 4.85510 4.89153 4.92840 5.02254 5.07264 5.10436 5.11483 5.14260 5.24410 5.26869 5.37277 5.48453 5.54014 5.54197 5.65306 6.04605 6.30659 6.31557 6.42503 6.60962 6.71415 6.75854 7.29690 7.52757 8.89624 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011439 B = 0.003306 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.142515 B = 8466.252226 C = 9153.684860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.162 4.162 3 C 0.101 3.899 4 H 0.091 0.909 5 N -0.671 5.671 6 C 0.048 3.952 7 C 0.503 3.497 8 O -0.572 6.572 9 N -0.597 5.597 10 C 0.223 3.777 11 C -0.531 4.531 12 H 0.029 0.971 13 C 0.009 3.991 14 N -0.950 5.950 15 Si 0.943 3.057 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.228 1.228 19 C 0.113 3.887 20 C -0.038 4.038 21 C 0.244 3.756 22 N -0.488 5.488 23 C -0.109 4.109 24 H 0.075 0.925 25 C -0.106 4.106 26 C -0.155 4.155 27 C 0.056 3.944 28 O -0.402 6.402 29 C 0.064 3.936 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.345 0.655 36 H 0.072 0.928 37 H 0.123 0.877 38 H 0.058 0.942 39 H 0.024 0.976 40 H 0.265 0.735 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.134 0.866 44 H 0.129 0.871 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.080 0.920 48 H 0.065 0.935 49 H 0.099 0.901 50 H 0.056 0.944 51 H 0.102 0.898 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.506 -2.234 -19.992 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.200 4.200 3 C -0.008 4.008 4 H 0.109 0.891 5 N -0.303 5.303 6 C -0.084 4.084 7 C 0.292 3.708 8 O -0.450 6.450 9 N -0.328 5.328 10 C 0.101 3.899 11 C -0.570 4.570 12 H 0.047 0.953 13 C -0.189 4.189 14 N -0.590 5.590 15 Si 0.766 3.234 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.150 1.150 19 C -0.012 4.012 20 C -0.079 4.079 21 C -0.074 4.074 22 N -0.166 5.166 23 C -0.128 4.128 24 H 0.094 0.906 25 C -0.144 4.144 26 C -0.192 4.192 27 C -0.020 4.020 28 O -0.321 6.321 29 C -0.012 4.012 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.164 0.836 36 H 0.090 0.910 37 H 0.141 0.859 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.117 0.883 43 H 0.152 0.848 44 H 0.147 0.853 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.098 0.902 48 H 0.083 0.917 49 H 0.117 0.883 50 H 0.074 0.926 51 H 0.120 0.880 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.529 -2.843 -19.763 25.295 hybrid contribution -1.576 0.403 0.981 1.900 sum 13.953 -2.440 -18.782 23.524 Atomic orbital electron populations 1.21783 0.95967 1.02228 1.01343 1.22353 0.96086 0.98094 1.03514 1.21629 0.94316 0.92666 0.92221 0.89088 1.60207 1.19499 1.50208 1.00341 1.21925 1.03580 0.95075 0.87842 1.21215 0.78225 0.86142 0.85260 1.90665 1.42606 1.24891 1.86841 1.47842 1.57421 1.21506 1.06049 1.19373 0.94434 0.92253 0.83835 1.21618 1.02212 1.22632 1.10510 0.95255 1.25844 0.95823 0.98939 0.98276 1.70061 1.18276 1.45048 1.25650 0.85783 0.81261 0.78969 0.77361 1.20440 1.20981 1.15041 1.21500 0.89604 0.84923 1.05166 1.19855 0.93001 0.86907 1.08142 1.29125 0.92499 0.94290 0.91459 1.81223 1.11185 1.13262 1.10912 1.21786 0.94457 0.97251 0.99327 0.90628 1.21458 0.94484 0.95816 1.02629 1.22235 0.96683 1.01462 0.98864 1.22733 0.99568 0.82922 0.96779 1.87918 1.21483 1.28149 1.94586 1.22748 0.80575 1.01876 0.96040 0.91874 0.92083 0.94466 0.89577 0.91565 0.83571 0.91033 0.85950 0.92419 0.95807 0.92566 0.89765 0.88317 0.84803 0.85297 0.92122 0.91759 0.90176 0.91667 0.88251 0.92586 0.87971 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.48 71.98 0.68 -1.78 16 2 C -0.16 -2.20 4.77 30.59 0.15 -2.06 16 3 C 0.10 1.56 2.14 44.92 0.10 1.66 16 4 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 5 N -0.67 -14.85 5.15 -495.59 -2.55 -17.40 16 6 C 0.05 1.07 3.85 85.56 0.33 1.40 16 7 C 0.50 17.11 7.73 87.66 0.68 17.79 16 8 O -0.57 -25.58 15.90 -3.02 -0.05 -25.63 16 9 N -0.60 -19.88 2.46 -826.17 -2.03 -21.91 16 10 C 0.22 9.54 4.23 85.63 0.36 9.90 16 11 C -0.53 -29.13 9.94 25.60 0.25 -28.87 16 12 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 13 C 0.01 0.49 5.47 84.65 0.46 0.95 16 14 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 15 Si 0.94 42.22 27.47 68.60 1.88 44.10 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.23 -8.74 6.54 99.48 0.65 -8.09 16 19 C 0.11 2.60 5.17 86.38 0.45 3.05 16 20 C -0.04 -0.61 6.03 28.79 0.17 -0.43 16 21 C 0.24 4.97 15.43 89.45 1.38 6.35 16 22 N -0.49 -13.07 18.53 19.99 0.37 -12.70 16 23 C -0.11 -1.60 1.70 -10.70 -0.02 -1.62 16 24 H 0.08 1.17 6.38 -2.39 -0.02 1.15 16 25 C -0.11 -1.74 5.10 30.71 0.16 -1.58 16 26 C -0.15 -2.19 6.15 30.75 0.19 -2.00 16 27 C 0.06 0.77 6.85 72.08 0.49 1.26 16 28 O -0.40 -7.07 10.77 -148.98 -1.60 -8.68 16 29 C 0.06 0.88 5.71 72.01 0.41 1.29 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.04 0.73 7.22 -2.39 -0.02 0.71 16 33 H 0.09 0.91 6.36 -2.38 -0.02 0.90 16 34 H 0.07 0.95 6.33 -2.39 -0.02 0.93 16 35 H 0.34 8.77 7.43 -89.69 -0.67 8.10 16 36 H 0.07 1.46 5.77 -2.39 -0.01 1.45 16 37 H 0.12 2.09 5.18 -2.39 -0.01 2.07 16 38 H 0.06 2.18 7.13 -2.39 -0.02 2.16 16 39 H 0.02 1.11 6.85 -2.39 -0.02 1.09 16 40 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.08 2.19 8.07 -2.39 -0.02 2.17 16 42 H 0.10 1.84 6.44 -2.38 -0.02 1.83 16 43 H 0.13 1.50 7.22 -2.39 -0.02 1.48 16 44 H 0.13 1.85 8.14 -2.39 -0.02 1.84 16 45 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.06 1.34 7.71 -2.39 -0.02 1.32 16 47 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.10 1.20 6.52 -2.39 -0.02 1.18 16 52 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -76.67 407.14 2.77 -73.90 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.20 Total: 21.35 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 6.24 Total: 5.31 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -3.91 Total: -110.36 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.65 Total: -34.30 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.88 Total: 44.10 kcal Total: -76.67 2.77 -73.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880465877.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.175 kcal (2) G-P(sol) polarization free energy of solvation -76.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds