Wall clock time and date at job start Tue Mar 31 2020 20:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47199 * 2 1 4 4 H 1.08999 * 109.46878 * 304.72508 * 3 2 1 5 5 N 1.46897 * 109.46786 * 64.72716 * 3 2 1 6 6 C 1.46902 * 110.99962 * 250.51716 * 5 3 2 7 7 C 1.50701 * 109.47569 * 174.65440 * 6 5 3 8 8 O 1.21285 * 119.99526 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00272 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00178 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47237 * 89.99628 * 10 9 7 12 12 H 1.07996 * 120.00052 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99891 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00016 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99891 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47175 * 89.99909 * 15 13 11 17 17 H 1.48496 * 109.47189 * 209.99796 * 15 13 11 18 18 H 1.48499 * 109.47193 * 329.99864 * 15 13 11 19 19 C 1.46504 * 120.00032 * 359.97438 * 9 7 6 20 20 C 1.52994 * 109.47054 * 90.00116 * 19 9 7 21 21 C 1.47199 * 109.47288 * 179.97438 * 20 19 9 22 22 N 7.43833 * 45.81338 * 343.73159 * 2 1 3 23 23 C 1.53001 * 109.47084 * 184.72547 * 3 2 1 24 24 H 1.08999 * 109.52311 * 60.00162 * 23 3 2 25 25 C 1.53177 * 109.52227 * 180.12698 * 23 3 2 26 26 C 1.53175 * 109.03572 * 176.88731 * 25 23 3 27 27 C 1.53089 * 109.16528 * 303.01771 * 26 25 23 28 28 O 1.42904 * 109.41390 * 57.60508 * 27 26 25 29 29 C 1.42911 * 114.15928 * 298.88157 * 28 27 26 30 30 H 1.08994 * 109.47305 * 64.93284 * 1 2 3 31 31 H 1.08997 * 109.47230 * 184.94041 * 1 2 3 32 32 H 1.09001 * 109.46908 * 304.93529 * 1 2 3 33 33 H 1.09005 * 109.47085 * 120.00005 * 2 1 3 34 34 H 1.08998 * 109.46904 * 239.99853 * 2 1 3 35 35 H 1.00903 * 111.00282 * 126.56936 * 5 3 2 36 36 H 1.09010 * 109.47251 * 294.65587 * 6 5 3 37 37 H 1.09004 * 109.47282 * 54.65050 * 6 5 3 38 38 H 1.08995 * 109.47204 * 210.00172 * 10 9 7 39 39 H 1.09004 * 109.47086 * 329.99776 * 10 9 7 40 40 H 0.97001 * 119.99913 * 180.02562 * 14 13 11 41 41 H 1.09001 * 109.47047 * 210.00268 * 19 9 7 42 42 H 1.09003 * 109.46982 * 329.99745 * 19 9 7 43 43 H 1.09001 * 109.47317 * 299.99986 * 20 19 9 44 44 H 1.09007 * 109.47069 * 60.00074 * 20 19 9 45 45 H 1.09004 * 109.54078 * 296.75654 * 25 23 3 46 46 H 1.08996 * 109.54616 * 57.01344 * 25 23 3 47 47 H 1.09002 * 109.52314 * 62.92483 * 26 25 23 48 48 H 1.09003 * 109.52280 * 183.04714 * 26 25 23 49 49 H 1.08997 * 109.48024 * 177.58951 * 27 26 25 50 50 H 1.08996 * 109.47749 * 297.61889 * 27 26 25 51 51 H 1.09000 * 109.42338 * 301.10699 * 29 28 27 52 52 H 1.09002 * 109.53763 * 181.07291 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6093 1.9801 -0.8446 5 7 1.6458 2.1012 1.2524 6 6 0.6073 3.1119 1.0114 7 6 0.1357 3.6717 2.3287 8 8 0.6177 3.2687 3.3662 9 7 -0.8215 4.6201 2.3539 10 6 -1.2796 5.1647 3.6345 11 6 -0.4388 6.3604 4.0014 12 1 0.3568 6.6826 3.3461 13 6 -0.6854 7.0428 5.1738 14 7 -1.6540 6.6500 5.9720 15 14 0.3562 8.5253 5.6282 16 1 -0.2640 9.7551 5.0730 17 1 0.4396 8.6372 7.1066 18 1 1.7211 8.3623 5.0664 19 6 -1.4032 5.1072 1.1007 20 6 -2.6187 4.2524 0.7365 21 6 -3.2036 4.7422 -0.5224 22 7 -3.6544 5.1203 -1.4942 23 6 3.5655 1.4441 -0.1188 24 1 3.8590 0.9555 -1.0479 25 6 4.0776 2.8877 -0.1158 26 6 5.6088 2.8747 -0.1566 27 6 6.1364 2.0686 1.0331 28 8 5.5976 0.7458 0.9870 29 6 4.1718 0.6918 1.0686 30 1 -0.3633 0.4354 -0.9308 31 1 -0.3633 -1.0238 0.0885 32 1 -0.3633 0.5885 0.8425 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 2.4454 2.5075 1.7146 36 1 1.0178 3.9163 0.4009 37 1 -0.2327 2.6526 0.4902 38 1 -2.3232 5.4669 3.5483 39 1 -1.1848 4.4027 4.4081 40 1 -1.8278 7.1304 6.7966 41 1 -1.7125 6.1452 1.2230 42 1 -0.6607 5.0406 0.3054 43 1 -2.3095 3.2144 0.6142 44 1 -3.3612 4.3190 1.5318 45 1 3.6939 3.4126 -0.9907 46 1 3.7412 3.3921 0.7900 47 1 5.9445 2.4146 -1.0860 48 1 5.9834 3.8968 -0.1001 49 1 7.2242 2.0198 0.9854 50 1 5.8345 2.5519 1.9622 51 1 3.8442 1.1561 1.9987 52 1 3.8445 -0.3477 1.0459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880465878.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:40 Heat of formation + Delta-G solvation = -86.698160 kcal Electronic energy + Delta-G solvation = -30596.117284 eV Core-core repulsion = 26594.425652 eV Total energy + Delta-G solvation = -4001.691632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.09929 -40.41660 -38.10784 -37.83364 -36.60460 -34.88048 -34.21824 -33.38172 -32.12820 -31.92583 -29.64620 -27.74460 -26.18748 -25.82867 -25.28042 -23.99595 -23.76707 -21.66128 -20.50079 -19.89096 -18.78351 -18.32057 -17.83492 -17.54121 -17.17288 -16.96100 -16.70366 -16.31135 -15.98600 -15.71585 -15.51735 -15.39853 -15.09845 -14.74778 -14.50883 -14.40208 -14.10267 -14.02432 -13.88026 -13.58707 -13.55212 -13.51564 -13.37148 -13.17315 -12.94256 -12.76729 -12.68856 -12.51200 -12.47455 -12.21412 -12.16212 -12.05363 -11.94042 -11.83731 -11.65638 -11.50874 -11.26542 -11.12966 -10.57291 -10.45680 -10.32383 -9.42525 -9.22517 -8.16549 -6.28817 1.39527 1.41974 1.50881 1.70564 1.84988 1.97422 2.27465 2.45096 2.96277 3.07079 3.15405 3.35182 3.68876 3.75434 3.86110 3.87918 4.03979 4.06814 4.13555 4.19652 4.33308 4.37957 4.41857 4.44295 4.48872 4.58904 4.64163 4.67195 4.71699 4.82758 4.85498 4.90004 4.93014 5.00051 5.06967 5.07883 5.10913 5.13827 5.23832 5.29772 5.35826 5.37331 5.46523 5.63050 5.63731 5.90153 6.12116 6.15319 6.27568 6.41066 6.61526 6.79314 6.87028 7.37175 7.60627 8.90000 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008260 B = 0.003678 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3389.106415 B = 7610.106135 C = 9764.971707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C 0.098 3.902 4 H 0.077 0.923 5 N -0.679 5.679 6 C 0.051 3.949 7 C 0.500 3.500 8 O -0.576 6.576 9 N -0.600 5.600 10 C 0.261 3.739 11 C -0.537 4.537 12 H 0.053 0.947 13 C 0.011 3.989 14 N -0.926 5.926 15 Si 0.957 3.043 16 H -0.268 1.268 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.114 3.886 20 C -0.039 4.039 21 C 0.246 3.754 22 N -0.488 5.488 23 C -0.124 4.124 24 H 0.096 0.904 25 C -0.125 4.125 26 C -0.148 4.148 27 C 0.051 3.949 28 O -0.402 6.402 29 C 0.064 3.936 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.341 0.659 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.032 0.968 39 H 0.002 0.998 40 H 0.265 0.735 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.135 0.865 44 H 0.119 0.881 45 H 0.080 0.920 46 H 0.050 0.950 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.105 0.895 50 H 0.042 0.958 51 H 0.042 0.958 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.968 -10.639 -16.936 21.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.011 4.011 4 H 0.095 0.905 5 N -0.313 5.313 6 C -0.081 4.081 7 C 0.289 3.711 8 O -0.455 6.455 9 N -0.331 5.331 10 C 0.140 3.860 11 C -0.576 4.576 12 H 0.071 0.929 13 C -0.188 4.188 14 N -0.566 5.566 15 Si 0.782 3.218 16 H -0.193 1.193 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.010 4.010 20 C -0.080 4.080 21 C -0.071 4.071 22 N -0.166 5.166 23 C -0.143 4.143 24 H 0.114 0.886 25 C -0.163 4.163 26 C -0.186 4.186 27 C -0.026 4.026 28 O -0.321 6.321 29 C -0.012 4.012 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.162 0.838 36 H 0.094 0.906 37 H 0.143 0.857 38 H 0.050 0.950 39 H 0.020 0.980 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.124 0.876 43 H 0.153 0.847 44 H 0.137 0.863 45 H 0.098 0.902 46 H 0.069 0.931 47 H 0.096 0.904 48 H 0.100 0.900 49 H 0.123 0.877 50 H 0.060 0.940 51 H 0.060 0.940 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.123 -10.886 -17.505 22.157 hybrid contribution 0.721 1.784 1.072 2.203 sum 8.844 -9.102 -16.434 20.763 Atomic orbital electron populations 1.21729 0.95763 1.01513 1.01630 1.21589 0.96349 0.95108 1.01801 1.21640 0.92668 0.96129 0.90683 0.90496 1.60210 1.14617 1.32661 1.23836 1.22047 0.98071 0.95249 0.92773 1.21242 0.79174 0.78773 0.91936 1.90674 1.57058 1.60745 1.37000 1.48089 1.38533 1.38737 1.07791 1.18757 0.94345 0.92162 0.80755 1.21741 1.16980 1.12962 1.05939 0.92869 1.25714 0.96469 1.00463 0.96141 1.70029 1.31945 1.41769 1.12876 0.85577 0.79116 0.79832 0.77249 1.19274 1.21145 1.19853 1.21500 0.94890 0.98626 0.86022 1.19838 0.98386 1.02109 0.87627 1.29131 0.92183 0.91956 0.93865 1.81256 1.10968 1.10616 1.13783 1.22089 0.95169 0.96615 1.00409 0.88595 1.21729 0.96088 0.96173 1.02293 1.22119 0.95627 1.01354 0.99503 1.22729 0.99467 0.83036 0.97324 1.87891 1.21356 1.28161 1.94682 1.22701 0.79845 1.01779 0.96878 0.92178 0.93048 0.93152 0.92487 0.90593 0.83768 0.90648 0.85727 0.95011 0.98003 0.92643 0.89937 0.87644 0.84686 0.86334 0.90172 0.93141 0.90423 0.89979 0.87719 0.93976 0.94005 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.36 71.98 0.67 -1.65 16 2 C -0.11 -1.68 5.12 30.60 0.16 -1.52 16 3 C 0.10 1.54 1.94 44.92 0.09 1.63 16 4 H 0.08 1.00 7.57 -2.39 -0.02 0.98 16 5 N -0.68 -15.25 5.00 -495.56 -2.48 -17.73 16 6 C 0.05 1.11 4.01 85.56 0.34 1.45 16 7 C 0.50 17.42 7.72 87.66 0.68 18.10 16 8 O -0.58 -26.84 15.90 -3.05 -0.05 -26.89 16 9 N -0.60 -20.84 2.46 -826.15 -2.03 -22.87 16 10 C 0.26 12.48 5.16 85.63 0.44 12.92 16 11 C -0.54 -28.67 9.39 25.60 0.24 -28.43 16 12 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 13 C 0.01 0.62 5.46 84.65 0.46 1.08 16 14 N -0.93 -53.61 13.29 21.45 0.28 -53.33 16 15 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 C 0.11 2.66 5.17 86.38 0.45 3.11 16 20 C -0.04 -0.67 6.03 28.79 0.17 -0.50 16 21 C 0.25 5.12 15.43 89.44 1.38 6.50 16 22 N -0.49 -13.06 18.54 20.01 0.37 -12.69 16 23 C -0.12 -1.92 2.19 -10.70 -0.02 -1.94 16 24 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 25 C -0.13 -1.97 5.15 30.71 0.16 -1.82 16 26 C -0.15 -2.20 6.14 30.68 0.19 -2.01 16 27 C 0.05 0.91 6.85 72.01 0.49 1.41 16 28 O -0.40 -8.83 10.76 -148.98 -1.60 -10.43 16 29 C 0.06 1.28 5.55 72.01 0.40 1.68 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.98 6.54 -2.39 -0.02 0.96 16 33 H 0.06 1.03 6.76 -2.38 -0.02 1.01 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 35 H 0.34 8.86 5.08 -89.69 -0.46 8.41 16 36 H 0.08 1.36 7.40 -2.38 -0.02 1.34 16 37 H 0.13 2.01 5.89 -2.39 -0.01 2.00 16 38 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 39 H 0.00 0.10 7.42 -2.39 -0.02 0.09 16 40 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.08 2.15 8.07 -2.39 -0.02 2.13 16 42 H 0.11 1.80 6.44 -2.39 -0.02 1.79 16 43 H 0.14 1.66 7.22 -2.39 -0.02 1.64 16 44 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 45 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.05 0.98 6.45 -2.39 -0.02 0.96 16 47 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.10 1.53 8.14 -2.39 -0.02 1.52 16 50 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.04 0.99 6.77 -2.39 -0.02 0.97 16 52 H 0.10 1.86 6.69 -2.39 -0.02 1.85 16 Total: -1.00 -72.84 411.38 3.28 -69.56 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.46 Total: 19.03 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 6.30 Total: 9.99 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -3.85 Total: -106.61 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -1.65 Total: -37.32 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -72.84 3.28 -69.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880465878.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.137 kcal (2) G-P(sol) polarization free energy of solvation -72.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds