Wall clock time and date at job start Tue Mar 31 2020 19:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47636 * 2 1 4 4 C 1.53000 * 109.47328 * 239.99658 * 2 1 3 5 5 C 1.50703 * 109.46912 * 60.00217 * 4 2 1 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 2 8 8 C 1.47083 * 120.87903 * 359.71565 * 7 5 4 9 9 C 1.53695 * 108.27426 * 128.75696 * 8 7 5 10 10 N 1.46894 * 109.25706 * 54.08603 * 9 8 7 11 11 C 1.46897 * 111.00366 * 172.60687 * 10 9 8 12 12 C 1.53951 * 113.74019 * 43.04183 * 11 10 9 13 13 N 1.47820 * 86.03573 * 222.08478 * 12 11 10 14 14 C 1.36935 * 134.45677 * 204.64029 * 13 12 11 15 15 H 1.07995 * 119.99983 * 179.86848 * 14 13 12 16 16 C 1.38812 * 119.99999 * 359.87222 * 14 13 12 17 17 N 1.31622 * 119.99786 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00120 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46949 * 59.99448 * 18 16 14 20 20 H 1.48498 * 109.47400 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46681 * 300.00107 * 18 16 14 22 22 C 1.47591 * 91.04948 * 24.54754 * 13 12 11 23 23 C 1.46906 * 111.26730 * 296.75600 * 10 9 8 24 24 C 1.47078 * 120.88364 * 180.02562 * 7 5 4 25 25 C 1.53001 * 109.47302 * 119.99712 * 2 1 3 26 26 C 1.53007 * 117.49332 * 13.62257 * 25 2 1 27 27 C 1.52998 * 117.49825 * 305.00380 * 25 2 1 28 28 H 1.08992 * 109.47554 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47108 * 300.00231 * 1 2 3 30 30 H 1.09000 * 109.46870 * 60.00125 * 1 2 3 31 31 H 0.96698 * 114.00516 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47398 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47194 * 300.00476 * 4 2 1 34 34 H 1.08995 * 109.63429 * 248.52500 * 8 7 5 35 35 H 1.09000 * 109.62775 * 9.10833 * 8 7 5 36 36 H 1.08997 * 109.65130 * 294.08025 * 9 8 7 37 37 H 1.09002 * 109.42159 * 173.94942 * 9 8 7 38 38 H 1.09002 * 112.94734 * 174.63022 * 11 10 9 39 39 H 1.09000 * 113.77052 * 336.34801 * 12 11 10 40 40 H 1.08996 * 113.76896 * 107.74759 * 12 11 10 41 41 H 0.96998 * 119.99495 * 180.02562 * 17 16 14 42 42 H 1.08994 * 113.76549 * 221.14928 * 22 13 12 43 43 H 1.09002 * 113.76480 * 89.75327 * 22 13 12 44 44 H 1.08996 * 109.49284 * 303.14501 * 23 10 9 45 45 H 1.09005 * 109.49020 * 183.06847 * 23 10 9 46 46 H 1.09004 * 109.62590 * 350.89259 * 24 7 5 47 47 H 1.08995 * 109.62815 * 111.47562 * 24 7 5 48 48 H 1.08997 * 115.55350 * 159.32441 * 25 2 1 49 49 H 1.08990 * 117.50097 * 359.97438 * 26 25 2 50 50 H 1.09000 * 117.49686 * 145.02704 * 26 25 2 51 51 H 1.09004 * 117.50186 * 214.97575 * 27 25 2 52 52 H 1.09002 * 117.50183 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 8 0.8401 0.9749 -2.3685 7 7 1.8629 -0.4717 -3.7038 8 6 2.7118 -1.6624 -3.8612 9 6 2.0050 -2.6351 -4.8185 10 7 1.6805 -1.9348 -6.0683 11 6 1.1628 -2.8694 -7.0765 12 6 0.1538 -3.8885 -6.5166 13 7 0.8552 -4.8869 -7.3511 14 6 0.5029 -6.0852 -7.9125 15 1 1.2212 -6.6386 -8.4990 16 6 -0.7775 -6.5884 -7.7277 17 7 -1.6528 -5.9140 -7.0124 18 14 -1.2584 -8.2227 -8.4941 19 1 -0.3729 -9.2941 -7.9715 20 1 -2.6691 -8.5344 -8.1509 21 1 -1.1155 -8.1383 -9.9698 22 6 2.0863 -4.0730 -7.3380 23 6 0.7337 -0.8364 -5.8333 24 6 1.3839 0.2068 -4.9176 25 6 2.0400 -0.7212 1.2493 26 6 1.0318 -1.5508 2.0470 27 6 1.5415 -0.2212 2.6066 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.9704 1.4236 -0.0004 32 1 3.1300 -0.7217 -1.2490 33 1 1.6766 -1.7490 -1.2492 34 1 3.6769 -1.3719 -4.2763 35 1 2.8558 -2.1402 -2.8921 36 1 1.0874 -3.0009 -4.3578 37 1 2.6647 -3.4758 -5.0334 38 1 0.8244 -2.3704 -7.9846 39 1 0.2541 -4.0630 -5.4454 40 1 -0.8751 -3.7023 -6.8241 41 1 -2.5474 -6.2659 -6.8831 42 1 2.5972 -4.0339 -8.3000 43 1 2.7554 -4.3017 -6.5085 44 1 -0.1661 -1.2272 -5.3585 45 1 0.4715 -0.3725 -6.7843 46 1 0.6494 0.9655 -4.6473 47 1 2.2240 0.6732 -5.4321 48 1 3.0641 -1.0901 1.1940 49 1 0.0053 -1.5825 1.6821 50 1 1.3927 -2.4658 2.5167 51 1 2.2377 -0.2614 3.4445 52 1 0.8506 0.6219 2.6097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941380381.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:53 Heat of formation + Delta-G solvation = 25.005705 kcal Electronic energy + Delta-G solvation = -30637.256888 eV Core-core repulsion = 26640.409098 eV Total energy + Delta-G solvation = -3996.847789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.62970 -39.46630 -38.46323 -36.57568 -35.57819 -33.78758 -32.23006 -31.73601 -30.90629 -28.64844 -27.64989 -26.10755 -24.91806 -24.33627 -23.60420 -22.69232 -22.55904 -21.21773 -19.87026 -19.32709 -18.31969 -17.40372 -16.98608 -16.72483 -16.17715 -15.78040 -15.62000 -15.17135 -15.05268 -14.82350 -14.74547 -14.31183 -14.12704 -13.80075 -13.45554 -13.24206 -13.09803 -12.58929 -12.43135 -12.28574 -12.10407 -11.97754 -11.86853 -11.77940 -11.59845 -11.38477 -11.20297 -11.07508 -10.98910 -10.82713 -10.78734 -10.71022 -10.58167 -10.45875 -10.20256 -10.12864 -9.92532 -9.52677 -9.52288 -8.82543 -8.65124 -7.84467 -6.89250 -5.79912 -3.12889 2.63605 2.90816 3.36740 3.40731 3.41124 3.42293 4.08575 4.14185 4.24340 4.38019 4.46238 4.61828 4.66425 4.78455 4.83885 4.97325 4.98649 5.03773 5.17954 5.23370 5.30028 5.33182 5.36300 5.39466 5.46445 5.49311 5.56677 5.60445 5.65097 5.71289 5.73353 5.78470 5.84347 5.87976 5.94921 5.98950 6.08750 6.15816 6.29605 6.32621 6.46629 6.55310 6.59777 6.98050 7.17277 7.35161 7.39965 7.50007 7.56038 7.59512 7.94400 8.21075 9.00551 9.67274 10.55694 11.36610 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.002534 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.567957 B =11045.291935 C =12076.517215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.182 3.818 3 O -0.538 6.538 4 C -0.166 4.166 5 C 0.516 3.484 6 O -0.524 6.524 7 N -0.614 5.614 8 C 0.112 3.888 9 C 0.034 3.966 10 N -0.529 5.529 11 C 0.035 3.965 12 C 0.134 3.866 13 N -0.609 5.609 14 C -0.223 4.223 15 H 0.080 0.920 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.912 3.088 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.125 3.875 23 C 0.043 3.957 24 C 0.119 3.881 25 C -0.190 4.190 26 C -0.177 4.177 27 C -0.165 4.165 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.367 0.633 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.028 0.972 40 H 0.069 0.931 41 H 0.254 0.746 42 H 0.046 0.954 43 H 0.037 0.963 44 H 0.040 0.960 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.071 0.929 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.094 0.906 51 H 0.092 0.908 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.057 12.410 14.994 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.141 3.859 3 O -0.342 6.342 4 C -0.207 4.207 5 C 0.304 3.696 6 O -0.400 6.400 7 N -0.349 5.349 8 C -0.011 4.011 9 C -0.095 4.095 10 N -0.253 5.253 11 C -0.074 4.074 12 C 0.007 3.993 13 N -0.336 5.336 14 C -0.351 4.351 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.569 5.569 18 Si 0.743 3.257 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.210 1.210 22 C -0.002 4.002 23 C -0.086 4.086 24 C -0.004 4.004 25 C -0.209 4.209 26 C -0.214 4.214 27 C -0.202 4.202 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.213 0.787 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.103 0.897 46 H 0.110 0.890 47 H 0.089 0.911 48 H 0.122 0.878 49 H 0.122 0.878 50 H 0.112 0.888 51 H 0.110 0.890 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.231 13.011 14.789 21.753 hybrid contribution -0.247 -1.826 -0.050 1.844 sum 8.984 11.185 14.738 20.568 Atomic orbital electron populations 1.22110 0.92356 1.02092 1.04703 1.20272 0.95128 0.81449 0.89040 1.86714 1.25581 1.25137 1.96745 1.22439 1.02574 1.01772 0.93867 1.20395 0.80471 0.84611 0.84087 1.90662 1.37461 1.26067 1.85820 1.48238 1.51375 1.29475 1.05768 1.22016 0.93992 0.85386 0.99731 1.22681 1.00294 0.96253 0.90224 1.62021 1.43100 1.11435 1.08785 1.24289 0.97422 0.90880 0.94775 1.22911 0.97394 0.85414 0.93604 1.45815 1.08156 1.21614 1.57997 1.18959 0.96229 0.94828 1.25040 0.90238 1.24793 0.96279 0.99018 1.00362 1.69816 1.05051 1.38710 1.43311 0.86197 0.77408 0.83254 0.78885 1.21178 1.21563 1.21026 1.22694 0.90951 0.88213 0.98314 1.22402 0.94000 0.92749 0.99484 1.21706 0.99584 0.94942 0.84122 1.23048 0.99495 1.04909 0.93416 1.23138 0.99681 0.95112 1.03474 1.22863 1.03722 0.98043 0.95575 0.91587 0.92264 0.88882 0.78714 0.88874 0.87970 0.90670 0.89899 0.93429 0.88937 0.88188 0.95421 0.91299 0.93624 0.93628 0.94543 0.94155 0.89736 0.89024 0.91086 0.87765 0.87824 0.88778 0.88962 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 7.18 37.16 0.27 -1.47 16 2 C 0.18 1.76 0.80 -90.62 -0.07 1.69 16 3 O -0.54 -5.89 11.85 -53.48 -0.63 -6.52 16 4 C -0.17 -1.51 3.31 -27.88 -0.09 -1.61 16 5 C 0.52 6.45 7.27 -10.98 -0.08 6.37 16 6 O -0.52 -8.26 12.41 -12.69 -0.16 -8.42 16 7 N -0.61 -7.36 3.00 -172.16 -0.52 -7.88 16 8 C 0.11 1.17 6.53 -3.36 -0.02 1.15 16 9 C 0.03 0.47 4.65 -3.47 -0.02 0.45 16 10 N -0.53 -7.85 4.77 -227.90 -1.09 -8.94 16 11 C 0.03 0.64 4.05 -69.91 -0.28 0.35 16 12 C 0.13 3.06 6.81 -2.83 -0.02 3.05 16 13 N -0.61 -15.37 3.70 -177.83 -0.66 -16.03 16 14 C -0.22 -6.20 10.70 -15.06 -0.16 -6.36 16 15 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 16 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 17 N -0.92 -27.28 11.39 55.49 0.63 -26.65 16 18 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.12 2.47 8.41 -2.96 -0.02 2.44 16 23 C 0.04 0.58 5.55 -3.68 -0.02 0.56 16 24 C 0.12 1.47 6.60 -3.58 -0.02 1.45 16 25 C -0.19 -1.47 5.32 -90.62 -0.48 -1.96 16 26 C -0.18 -1.34 9.65 -26.73 -0.26 -1.60 16 27 C -0.17 -1.26 9.85 -26.73 -0.26 -1.52 16 28 H 0.07 0.66 6.74 -51.93 -0.35 0.31 16 29 H 0.06 0.63 6.96 -51.93 -0.36 0.27 16 30 H 0.09 1.31 5.51 -51.93 -0.29 1.02 16 31 H 0.37 2.67 9.05 45.56 0.41 3.08 16 32 H 0.09 0.64 7.99 -51.93 -0.41 0.22 16 33 H 0.10 0.87 7.67 -51.93 -0.40 0.47 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.68 6.02 -51.93 -0.31 0.37 16 36 H 0.05 0.76 6.38 -51.93 -0.33 0.43 16 37 H 0.09 1.31 5.81 -51.93 -0.30 1.01 16 38 H 0.10 1.84 8.11 -51.93 -0.42 1.42 16 39 H 0.03 0.66 5.76 -51.93 -0.30 0.36 16 40 H 0.07 1.80 7.17 -51.93 -0.37 1.43 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.69 5.93 -51.93 -0.31 0.38 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 46 H 0.09 1.20 7.06 -51.93 -0.37 0.83 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.10 0.82 5.89 -51.93 -0.31 0.51 16 50 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.10 0.84 7.29 -51.93 -0.38 0.46 16 LS Contribution 390.73 15.07 5.89 5.89 Total: -1.00 -33.38 390.73 -10.93 -44.31 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.72 Total: 4.55 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -1.65 Total: 2.68 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -1.63 Total: -59.49 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.79 Total: -14.94 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.38 -10.93 -44.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941380381.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.316 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds