Wall clock time and date at job start Tue Mar 31 2020 19:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47636 * 2 1 4 4 C 1.53000 * 109.47328 * 239.99658 * 2 1 3 5 5 C 1.50703 * 109.46912 * 60.00217 * 4 2 1 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 2 8 8 C 1.47083 * 120.87903 * 359.71565 * 7 5 4 9 9 C 1.53695 * 108.27426 * 128.75696 * 8 7 5 10 10 N 1.46894 * 109.25706 * 54.08603 * 9 8 7 11 11 C 1.46897 * 111.00366 * 172.60687 * 10 9 8 12 12 C 1.53951 * 113.74019 * 43.04183 * 11 10 9 13 13 N 1.47820 * 86.03573 * 222.08478 * 12 11 10 14 14 C 1.36935 * 134.45677 * 204.64029 * 13 12 11 15 15 H 1.07995 * 119.99983 * 179.86848 * 14 13 12 16 16 C 1.38812 * 119.99999 * 359.87222 * 14 13 12 17 17 N 1.31622 * 119.99786 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00120 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46949 * 59.99448 * 18 16 14 20 20 H 1.48498 * 109.47400 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46681 * 300.00107 * 18 16 14 22 22 C 1.47591 * 91.04948 * 24.54754 * 13 12 11 23 23 C 1.46906 * 111.26730 * 296.75600 * 10 9 8 24 24 C 1.47078 * 120.88364 * 180.02562 * 7 5 4 25 25 C 1.53001 * 109.47302 * 119.99712 * 2 1 3 26 26 C 1.53007 * 117.49332 * 13.62257 * 25 2 1 27 27 C 1.52998 * 117.49825 * 305.00380 * 25 2 1 28 28 H 1.08992 * 109.47554 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47108 * 300.00231 * 1 2 3 30 30 H 1.09000 * 109.46870 * 60.00125 * 1 2 3 31 31 H 0.96698 * 114.00516 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47398 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47194 * 300.00476 * 4 2 1 34 34 H 1.08995 * 109.63429 * 248.52500 * 8 7 5 35 35 H 1.09000 * 109.62775 * 9.10833 * 8 7 5 36 36 H 1.08997 * 109.65130 * 294.08025 * 9 8 7 37 37 H 1.09002 * 109.42159 * 173.94942 * 9 8 7 38 38 H 1.09002 * 112.94734 * 174.63022 * 11 10 9 39 39 H 1.09000 * 113.77052 * 336.34801 * 12 11 10 40 40 H 1.08996 * 113.76896 * 107.74759 * 12 11 10 41 41 H 0.96998 * 119.99495 * 180.02562 * 17 16 14 42 42 H 1.08994 * 113.76549 * 221.14928 * 22 13 12 43 43 H 1.09002 * 113.76480 * 89.75327 * 22 13 12 44 44 H 1.08996 * 109.49284 * 303.14501 * 23 10 9 45 45 H 1.09005 * 109.49020 * 183.06847 * 23 10 9 46 46 H 1.09004 * 109.62590 * 350.89259 * 24 7 5 47 47 H 1.08995 * 109.62815 * 111.47562 * 24 7 5 48 48 H 1.08997 * 115.55350 * 159.32441 * 25 2 1 49 49 H 1.08990 * 117.50097 * 359.97438 * 26 25 2 50 50 H 1.09000 * 117.49686 * 145.02704 * 26 25 2 51 51 H 1.09004 * 117.50186 * 214.97575 * 27 25 2 52 52 H 1.09002 * 117.50183 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 8 0.8401 0.9749 -2.3685 7 7 1.8629 -0.4717 -3.7038 8 6 2.7118 -1.6624 -3.8612 9 6 2.0050 -2.6351 -4.8185 10 7 1.6805 -1.9348 -6.0683 11 6 1.1628 -2.8694 -7.0765 12 6 0.1538 -3.8885 -6.5166 13 7 0.8552 -4.8869 -7.3511 14 6 0.5029 -6.0852 -7.9125 15 1 1.2212 -6.6386 -8.4990 16 6 -0.7775 -6.5884 -7.7277 17 7 -1.6528 -5.9140 -7.0124 18 14 -1.2584 -8.2227 -8.4941 19 1 -0.3729 -9.2941 -7.9715 20 1 -2.6691 -8.5344 -8.1509 21 1 -1.1155 -8.1383 -9.9698 22 6 2.0863 -4.0730 -7.3380 23 6 0.7337 -0.8364 -5.8333 24 6 1.3839 0.2068 -4.9176 25 6 2.0400 -0.7212 1.2493 26 6 1.0318 -1.5508 2.0470 27 6 1.5415 -0.2212 2.6066 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.9704 1.4236 -0.0004 32 1 3.1300 -0.7217 -1.2490 33 1 1.6766 -1.7490 -1.2492 34 1 3.6769 -1.3719 -4.2763 35 1 2.8558 -2.1402 -2.8921 36 1 1.0874 -3.0009 -4.3578 37 1 2.6647 -3.4758 -5.0334 38 1 0.8244 -2.3704 -7.9846 39 1 0.2541 -4.0630 -5.4454 40 1 -0.8751 -3.7023 -6.8241 41 1 -2.5474 -6.2659 -6.8831 42 1 2.5972 -4.0339 -8.3000 43 1 2.7554 -4.3017 -6.5085 44 1 -0.1661 -1.2272 -5.3585 45 1 0.4715 -0.3725 -6.7843 46 1 0.6494 0.9655 -4.6473 47 1 2.2240 0.6732 -5.4321 48 1 3.0641 -1.0901 1.1940 49 1 0.0053 -1.5825 1.6821 50 1 1.3927 -2.4658 2.5167 51 1 2.2377 -0.2614 3.4445 52 1 0.8506 0.6219 2.6097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941380381.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:51 Heat of formation + Delta-G solvation = 1.484318 kcal Electronic energy + Delta-G solvation = -30638.276852 eV Core-core repulsion = 26640.409098 eV Total energy + Delta-G solvation = -3997.867753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.60258 -40.66359 -39.48963 -37.83011 -36.30662 -35.16883 -33.84889 -32.87543 -31.90546 -29.92110 -29.00940 -27.44530 -26.64269 -25.21454 -24.68476 -24.22315 -23.22528 -22.38688 -20.72307 -20.51071 -19.55958 -18.74661 -18.30067 -17.77945 -17.03001 -16.90141 -16.84760 -16.63440 -16.17468 -16.11648 -15.74638 -15.59544 -15.37503 -14.97305 -14.53925 -14.24358 -13.95410 -13.88299 -13.77476 -13.43076 -13.35485 -13.33439 -13.15592 -12.81435 -12.74182 -12.70655 -12.61827 -12.28504 -12.22007 -12.11243 -11.98422 -11.83494 -11.76918 -11.74165 -11.38777 -11.36919 -11.07099 -10.87987 -10.84915 -10.45439 -9.70752 -9.24513 -8.86137 -7.91895 -5.26180 1.43680 1.47101 1.53259 1.70005 1.99771 2.44296 2.80024 2.86290 3.27865 3.39996 3.47557 3.57962 3.62654 3.84484 3.86511 3.98181 3.99406 4.05301 4.15336 4.18208 4.25555 4.28173 4.36710 4.38853 4.49243 4.50339 4.59834 4.67567 4.72802 4.76711 4.81566 4.82889 4.90092 4.93715 4.95491 5.00011 5.02020 5.05407 5.11602 5.21810 5.27162 5.29590 5.37886 5.41549 5.47326 5.55139 5.89138 6.06958 6.13190 6.48863 6.88755 6.98234 7.26983 7.58941 8.54008 9.23884 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.002534 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.567957 B =11045.291935 C =12076.517215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.182 3.818 3 O -0.561 6.561 4 C -0.160 4.160 5 C 0.511 3.489 6 O -0.562 6.562 7 N -0.617 5.617 8 C 0.120 3.880 9 C 0.033 3.967 10 N -0.515 5.515 11 C 0.064 3.936 12 C 0.135 3.865 13 N -0.640 5.640 14 C -0.232 4.232 15 H 0.087 0.913 16 C -0.070 4.070 17 N -0.956 5.956 18 Si 0.979 3.021 19 H -0.275 1.275 20 H -0.297 1.297 21 H -0.275 1.275 22 C 0.129 3.871 23 C 0.046 3.954 24 C 0.126 3.874 25 C -0.183 4.183 26 C -0.180 4.180 27 C -0.169 4.169 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.382 0.618 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.021 0.979 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.020 0.980 40 H 0.026 0.974 41 H 0.246 0.754 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.014 0.986 45 H 0.095 0.905 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.127 0.873 49 H 0.094 0.906 50 H 0.107 0.893 51 H 0.106 0.894 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.115 11.983 15.551 23.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.141 3.859 3 O -0.367 6.367 4 C -0.200 4.200 5 C 0.300 3.700 6 O -0.441 6.441 7 N -0.351 5.351 8 C -0.002 4.002 9 C -0.096 4.096 10 N -0.238 5.238 11 C -0.046 4.046 12 C 0.008 3.992 13 N -0.368 5.368 14 C -0.360 4.360 15 H 0.104 0.896 16 C -0.263 4.263 17 N -0.605 5.605 18 Si 0.807 3.193 19 H -0.201 1.201 20 H -0.223 1.223 21 H -0.201 1.201 22 C 0.005 3.995 23 C -0.083 4.083 24 C 0.003 3.997 25 C -0.202 4.202 26 C -0.217 4.217 27 C -0.206 4.206 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.230 0.770 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.039 0.961 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.037 0.963 40 H 0.045 0.955 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.032 0.968 45 H 0.113 0.887 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.145 0.855 49 H 0.113 0.887 50 H 0.125 0.875 51 H 0.125 0.875 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.354 12.594 15.344 23.380 hybrid contribution -1.199 -1.628 -0.207 2.032 sum 11.155 10.966 15.136 21.767 Atomic orbital electron populations 1.22078 0.94308 1.02021 1.02863 1.20241 0.93807 0.81417 0.90392 1.86682 1.27175 1.25997 1.96875 1.22477 1.04544 1.01452 0.91535 1.21031 0.79689 0.84264 0.84970 1.90661 1.39086 1.28010 1.86369 1.48363 1.51399 1.29775 1.05578 1.22112 0.93675 0.84008 1.00438 1.22736 0.99457 0.97319 0.90058 1.62085 1.42249 1.10579 1.08913 1.23844 0.94890 0.90606 0.95244 1.22810 0.96262 0.87190 0.92973 1.46200 1.10849 1.21476 1.58230 1.19397 0.96419 0.95696 1.24535 0.89560 1.25658 0.96481 1.02613 1.01524 1.70031 1.04999 1.40302 1.45216 0.85137 0.76514 0.79301 0.78315 1.20125 1.22321 1.20076 1.22843 0.89869 0.87212 0.99616 1.22425 0.92955 0.92668 1.00273 1.21589 0.99822 0.94111 0.84216 1.23008 1.00435 1.04524 0.92196 1.23186 0.99354 0.95608 1.03512 1.22883 1.03845 0.97611 0.96222 0.90818 0.92628 0.92084 0.76953 0.85453 0.86900 0.88580 0.86921 0.96104 0.88840 0.88129 0.96267 0.95511 0.94474 0.92359 0.92484 0.96762 0.88716 0.90101 0.89393 0.85483 0.88736 0.87453 0.87522 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 7.18 71.98 0.52 -3.01 16 2 C 0.18 3.24 0.80 -10.79 -0.01 3.23 16 3 O -0.56 -11.62 11.85 -131.53 -1.56 -13.18 16 4 C -0.16 -2.48 3.31 29.85 0.10 -2.38 16 5 C 0.51 12.07 7.27 87.66 0.64 12.71 16 6 O -0.56 -17.86 12.41 14.43 0.18 -17.68 16 7 N -0.62 -13.62 3.00 -816.98 -2.45 -16.07 16 8 C 0.12 2.11 6.53 86.50 0.57 2.68 16 9 C 0.03 0.85 4.65 86.54 0.40 1.25 16 10 N -0.51 -14.54 4.77 -874.95 -4.17 -18.71 16 11 C 0.06 2.29 4.05 46.67 0.19 2.47 16 12 C 0.13 6.37 6.81 86.44 0.59 6.96 16 13 N -0.64 -32.45 3.70 -716.53 -2.65 -35.11 16 14 C -0.23 -12.95 10.70 84.03 0.90 -12.05 16 15 H 0.09 4.56 7.83 -2.91 -0.02 4.53 16 16 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 17 N -0.96 -58.50 11.39 21.65 0.25 -58.25 16 18 Si 0.98 45.74 29.55 68.60 2.03 47.77 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 C 0.13 4.93 8.41 86.48 0.73 5.65 16 23 C 0.05 1.23 5.55 86.39 0.48 1.71 16 24 C 0.13 2.96 6.60 86.36 0.57 3.53 16 25 C -0.18 -2.36 5.32 -10.79 -0.06 -2.42 16 26 C -0.18 -2.38 9.65 30.60 0.30 -2.09 16 27 C -0.17 -2.30 9.85 30.59 0.30 -2.00 16 28 H 0.07 1.48 6.74 -2.39 -0.02 1.46 16 29 H 0.05 1.24 6.96 -2.38 -0.02 1.22 16 30 H 0.06 1.80 5.51 -2.39 -0.01 1.79 16 31 H 0.38 4.76 9.05 -74.06 -0.67 4.09 16 32 H 0.13 1.12 7.99 -2.39 -0.02 1.10 16 33 H 0.11 1.56 7.67 -2.39 -0.02 1.54 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.11 1.35 6.02 -2.39 -0.01 1.34 16 36 H 0.02 0.66 6.38 -2.39 -0.02 0.64 16 37 H 0.09 2.41 5.81 -2.39 -0.01 2.39 16 38 H 0.10 3.63 8.11 -2.39 -0.02 3.61 16 39 H 0.02 0.95 5.76 -2.39 -0.01 0.94 16 40 H 0.03 1.47 7.17 -2.39 -0.02 1.45 16 41 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 42 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.06 1.99 5.93 -2.39 -0.01 1.97 16 44 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.09 2.36 8.09 -2.38 -0.02 2.34 16 46 H 0.08 2.12 7.06 -2.39 -0.02 2.10 16 47 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.13 1.10 8.14 -2.39 -0.02 1.09 16 49 H 0.09 1.42 5.89 -2.39 -0.01 1.40 16 50 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 52 H 0.08 1.39 7.29 -2.39 -0.02 1.37 16 Total: -1.00 -75.33 390.73 -1.45 -76.78 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.26 Total: 21.76 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 6.67 Total: 12.69 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -9.03 Total: -128.13 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -1.38 Total: -30.86 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -75.33 -1.45 -76.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941380381.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.261 kcal (2) G-P(sol) polarization free energy of solvation -75.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds