Wall clock time and date at job start Tue Mar 31 2020 19:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47042 * 2 1 4 4 C 1.52998 * 109.47329 * 120.00181 * 2 1 3 5 5 C 1.50698 * 109.47270 * 180.64227 * 4 2 1 6 6 O 1.21287 * 119.99957 * 354.45750 * 5 4 2 7 7 N 1.34783 * 120.00177 * 174.46257 * 5 4 2 8 8 C 1.47079 * 120.87913 * 179.97438 * 7 5 4 9 9 C 1.53237 * 108.51672 * 231.20079 * 8 7 5 10 10 N 1.46895 * 109.34392 * 306.17117 * 9 8 7 11 11 C 1.46904 * 111.00291 * 187.25410 * 10 9 8 12 12 C 1.53492 * 114.20557 * 180.02562 * 11 10 9 13 13 N 1.47067 * 87.98402 * 220.14418 * 12 11 10 14 14 C 1.36939 * 136.06074 * 206.86214 * 13 12 11 15 15 H 1.08001 * 120.00001 * 359.97438 * 14 13 12 16 16 C 1.38808 * 119.99941 * 180.02562 * 14 13 12 17 17 N 1.31615 * 120.00490 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00042 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46636 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47317 * 119.99177 * 18 16 14 21 21 H 1.48501 * 109.47203 * 239.99853 * 18 16 14 22 22 C 1.47069 * 87.88376 * 27.12181 * 13 12 11 23 23 C 1.46906 * 111.26767 * 63.10651 * 10 9 8 24 24 C 1.47077 * 120.87630 * 0.02562 * 7 5 4 25 25 C 1.52999 * 109.47086 * 240.00058 * 2 1 3 26 26 C 1.53001 * 117.49946 * 128.62310 * 25 2 1 27 27 C 1.53000 * 117.49864 * 59.99813 * 25 2 1 28 28 H 1.09000 * 109.46940 * 304.79706 * 1 2 3 29 29 H 1.09001 * 109.47381 * 64.80231 * 1 2 3 30 30 H 1.09001 * 109.46927 * 184.80371 * 1 2 3 31 31 H 0.96703 * 114.00058 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47004 * 60.64191 * 4 2 1 33 33 H 1.09000 * 109.47180 * 300.64249 * 4 2 1 34 34 H 1.08997 * 109.62478 * 111.49585 * 8 7 5 35 35 H 1.08998 * 109.79359 * 351.00708 * 8 7 5 36 36 H 1.09004 * 109.49398 * 186.20973 * 9 8 7 37 37 H 1.09004 * 109.49621 * 66.13574 * 9 8 7 38 38 H 1.09000 * 113.28063 * 313.06747 * 11 10 9 39 39 H 1.09005 * 113.46568 * 105.37158 * 12 11 10 40 40 H 1.08995 * 113.52589 * 334.93789 * 12 11 10 41 41 H 0.96996 * 120.00563 * 180.02562 * 17 16 14 42 42 H 1.09001 * 113.46464 * 87.65893 * 22 13 12 43 43 H 1.09002 * 113.46459 * 218.09763 * 22 13 12 44 44 H 1.08997 * 109.49422 * 56.85416 * 23 10 9 45 45 H 1.08997 * 109.49310 * 176.93284 * 23 10 9 46 46 H 1.09000 * 109.63007 * 248.50125 * 24 7 5 47 47 H 1.08997 * 109.63270 * 9.09087 * 24 7 5 48 48 H 1.08999 * 115.55444 * 274.32831 * 25 2 1 49 49 H 1.09005 * 117.49922 * 359.97438 * 26 25 2 50 50 H 1.09003 * 117.50149 * 145.02624 * 26 25 2 51 51 H 1.08996 * 117.50106 * 214.97777 * 27 25 2 52 52 H 1.08999 * 117.49801 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5469 -0.7075 1.2572 6 8 4.1544 -0.2635 0.3059 7 7 4.2197 -1.1887 2.3213 8 6 5.6902 -1.1851 2.3494 9 6 6.1734 -2.5931 2.7133 10 7 5.5294 -3.0208 3.9623 11 6 6.0933 -4.2915 4.4371 12 6 5.4706 -4.8079 5.7416 13 7 6.8200 -5.2110 6.1653 14 6 7.3497 -6.1600 6.9984 15 1 6.6972 -6.8372 7.5294 16 6 8.7252 -6.2509 7.1612 17 7 9.5205 -5.4253 6.5144 18 14 9.4478 -7.5459 8.2971 19 1 8.3498 -8.3432 8.9005 20 1 10.3418 -8.4420 7.5208 21 1 10.2259 -6.8816 9.3735 22 6 7.3501 -4.1420 5.3055 23 6 4.0721 -3.1180 3.8043 24 6 3.5027 -1.7322 3.4848 25 6 2.0400 -0.7212 -1.2492 26 6 3.0741 0.0052 -2.1117 27 6 1.6357 -0.1495 -2.6096 28 1 -0.3633 0.5865 0.8439 29 1 -0.3634 0.4375 -0.9299 30 1 -0.3633 -1.0241 0.0861 31 1 2.9703 1.4236 -0.0004 32 1 1.6861 -1.7522 1.2434 33 1 1.6673 -0.2142 2.1392 34 1 6.0404 -0.4732 3.0968 35 1 6.0774 -0.9071 1.3691 36 1 7.2552 -2.5832 2.8467 37 1 5.9116 -3.2856 1.9133 38 1 6.1780 -5.0447 3.6538 39 1 4.7923 -5.6487 5.5957 40 1 5.0388 -4.0205 6.3592 41 1 10.4817 -5.4890 6.6279 42 1 7.4193 -3.1763 5.8064 43 1 8.2698 -4.4164 4.7889 44 1 3.8395 -3.8031 2.9892 45 1 3.6299 -3.4888 4.7290 46 1 3.6422 -1.0730 4.3416 47 1 2.4409 -1.8172 3.2537 48 1 2.1267 -1.8044 -1.1643 49 1 3.3909 0.9971 -1.7893 50 1 3.8415 -0.6001 -2.5943 51 1 1.4568 -0.8565 -3.4196 52 1 1.0067 0.7407 -2.6145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941380382.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:54 Heat of formation + Delta-G solvation = -3.512738 kcal Electronic energy + Delta-G solvation = -30429.306653 eV Core-core repulsion = 26431.222211 eV Total energy + Delta-G solvation = -3998.084442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.63966 -40.55717 -39.42852 -37.92478 -35.89287 -35.23200 -33.97212 -33.17913 -32.15401 -30.01719 -29.11677 -27.46456 -26.55474 -24.72998 -24.42657 -23.99982 -23.10152 -22.34739 -20.89603 -20.75704 -19.89105 -18.80837 -18.30740 -17.75901 -17.30131 -16.97927 -16.71097 -16.66064 -16.14433 -16.03030 -15.79194 -15.39744 -15.13370 -15.00659 -14.43032 -14.33085 -13.86162 -13.77519 -13.66664 -13.40866 -13.35548 -13.19316 -13.02319 -12.99785 -12.88332 -12.80477 -12.65314 -12.45251 -12.20442 -12.19488 -12.11979 -11.91241 -11.77814 -11.72800 -11.32311 -11.14435 -11.00604 -10.88412 -10.72872 -10.43642 -9.77232 -9.24110 -8.94603 -7.92521 -5.26893 1.45330 1.46805 1.57117 1.64231 1.97366 2.44068 2.86744 2.96824 3.29506 3.32774 3.47970 3.53934 3.65165 3.74230 3.82667 3.95372 4.06059 4.14258 4.20563 4.21651 4.26848 4.37261 4.39848 4.44833 4.48501 4.60476 4.68071 4.71234 4.77223 4.77705 4.81921 4.84156 4.88758 4.90535 4.94158 4.96740 5.01767 5.12308 5.17563 5.25399 5.32550 5.33282 5.36185 5.38992 5.46655 5.49833 5.89227 6.13008 6.14968 6.45317 6.75434 6.88775 7.19495 7.57914 8.58641 9.25500 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032668 B = 0.002071 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.890777 B =13519.831610 C =13835.035413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.173 3.827 3 O -0.575 6.575 4 C -0.162 4.162 5 C 0.511 3.489 6 O -0.564 6.564 7 N -0.611 5.611 8 C 0.126 3.874 9 C 0.049 3.951 10 N -0.527 5.527 11 C 0.055 3.945 12 C 0.136 3.864 13 N -0.645 5.645 14 C -0.226 4.226 15 H 0.089 0.911 16 C -0.071 4.071 17 N -0.955 5.955 18 Si 0.982 3.018 19 H -0.262 1.262 20 H -0.292 1.292 21 H -0.293 1.293 22 C 0.172 3.828 23 C 0.038 3.962 24 C 0.114 3.886 25 C -0.171 4.171 26 C -0.153 4.153 27 C -0.174 4.174 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.381 0.619 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.030 0.970 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.248 0.752 42 H 0.020 0.980 43 H 0.030 0.970 44 H 0.037 0.963 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.122 0.878 48 H 0.101 0.899 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.098 0.902 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.827 10.748 -13.876 27.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.132 3.868 3 O -0.386 6.386 4 C -0.201 4.201 5 C 0.302 3.698 6 O -0.444 6.444 7 N -0.344 5.344 8 C 0.003 3.997 9 C -0.080 4.080 10 N -0.252 5.252 11 C -0.055 4.055 12 C 0.010 3.990 13 N -0.372 5.372 14 C -0.355 4.355 15 H 0.107 0.893 16 C -0.264 4.264 17 N -0.603 5.603 18 Si 0.810 3.190 19 H -0.186 1.186 20 H -0.219 1.219 21 H -0.220 1.220 22 C 0.046 3.954 23 C -0.090 4.090 24 C -0.008 4.008 25 C -0.189 4.189 26 C -0.190 4.190 27 C -0.211 4.211 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.233 0.767 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.037 0.963 43 H 0.048 0.952 44 H 0.055 0.945 45 H 0.117 0.883 46 H 0.101 0.899 47 H 0.139 0.861 48 H 0.119 0.881 49 H 0.104 0.896 50 H 0.096 0.904 51 H 0.116 0.884 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.819 11.262 -13.835 27.417 hybrid contribution 1.860 -1.432 0.144 2.352 sum -18.960 9.830 -13.690 25.368 Atomic orbital electron populations 1.21767 0.90576 1.03737 1.03107 1.20528 0.94923 0.80983 0.90366 1.86421 1.28471 1.26923 1.96792 1.22529 0.90597 1.05280 1.01744 1.21136 0.91061 0.76505 0.81132 1.90650 1.70938 1.47962 1.34851 1.48307 1.06797 1.61202 1.18132 1.21522 0.79936 0.95783 1.02468 1.22363 0.99618 0.96040 0.89947 1.62041 1.04863 1.28788 1.29550 1.23449 0.97509 0.89637 0.94864 1.22502 0.88204 0.96575 0.91693 1.45784 1.03859 1.34746 1.52768 1.19370 0.90660 1.07262 1.18161 0.89340 1.25711 0.96353 1.01818 1.02471 1.70037 1.02663 1.40818 1.46822 0.84952 0.78252 0.78046 0.77729 1.18567 1.21891 1.21982 1.21907 0.94474 0.89737 0.89283 1.22562 0.87283 0.97193 1.01943 1.22043 0.97298 0.93533 0.87910 1.22881 1.04711 0.99036 0.92313 1.22587 0.91918 1.01596 1.02945 1.23020 0.98197 1.03110 0.96770 0.91307 0.92017 0.89066 0.76693 0.85672 0.86321 0.90764 0.89313 0.90584 0.95149 0.92335 0.92996 0.92860 0.94273 0.96269 0.95161 0.94481 0.88331 0.89924 0.86051 0.88136 0.89582 0.90381 0.88385 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.75 71.98 0.63 -0.86 16 2 C 0.17 2.62 0.92 -10.80 -0.01 2.61 16 3 O -0.58 -11.64 12.10 -132.77 -1.61 -13.25 16 4 C -0.16 -1.97 3.33 29.85 0.10 -1.87 16 5 C 0.51 9.62 7.20 87.66 0.63 10.25 16 6 O -0.56 -13.62 10.84 13.16 0.14 -13.48 16 7 N -0.61 -11.50 3.01 -818.05 -2.46 -13.97 16 8 C 0.13 2.84 6.59 86.35 0.57 3.41 16 9 C 0.05 1.29 5.61 86.38 0.48 1.78 16 10 N -0.53 -14.71 4.62 -869.40 -4.02 -18.73 16 11 C 0.05 1.97 3.52 45.38 0.16 2.13 16 12 C 0.14 5.21 7.12 83.18 0.59 5.80 16 13 N -0.64 -33.26 3.78 -738.56 -2.79 -36.06 16 14 C -0.23 -12.72 10.75 84.03 0.90 -11.82 16 15 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 16 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 17 N -0.95 -58.44 11.51 21.65 0.25 -58.19 16 18 Si 0.98 45.70 29.55 68.60 2.03 47.72 16 19 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 22 C 0.17 8.27 7.22 83.18 0.60 8.87 16 23 C 0.04 0.77 5.46 86.36 0.47 1.24 16 24 C 0.11 1.68 6.45 86.33 0.56 2.24 16 25 C -0.17 -2.89 4.03 -10.79 -0.04 -2.94 16 26 C -0.15 -3.05 7.93 30.60 0.24 -2.81 16 27 C -0.17 -2.81 9.61 30.60 0.29 -2.52 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.76 7.13 -2.39 -0.02 0.74 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.38 8.23 5.33 -74.06 -0.39 7.83 16 32 H 0.13 0.98 7.91 -2.39 -0.02 0.96 16 33 H 0.12 1.07 7.72 -2.39 -0.02 1.05 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.09 2.11 7.07 -2.39 -0.02 2.09 16 36 H 0.08 2.21 8.11 -2.38 -0.02 2.19 16 37 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 2.21 8.13 -2.39 -0.02 2.19 16 39 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.05 1.94 7.90 -2.39 -0.02 1.92 16 41 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 42 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.03 1.65 7.12 -2.39 -0.02 1.64 16 44 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.10 1.85 6.83 -2.39 -0.02 1.83 16 46 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.12 0.93 6.05 -2.39 -0.01 0.92 16 48 H 0.10 1.67 8.11 -2.39 -0.02 1.65 16 49 H 0.09 1.89 6.30 -2.38 -0.02 1.87 16 50 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.09 1.52 7.59 -2.39 -0.02 1.50 16 Total: -1.00 -70.60 395.61 -1.30 -71.90 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.51 Total: 22.12 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 6.65 Total: 11.92 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -9.03 Total: -126.94 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -1.46 Total: -26.73 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -70.60 -1.30 -71.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941380382.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.392 kcal (2) G-P(sol) polarization free energy of solvation -70.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds