Wall clock time and date at job start Tue Mar 31 2020 19:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47016 * 2 1 4 4 H 1.08995 * 110.27635 * 304.36049 * 3 2 1 5 5 C 1.54946 * 110.31121 * 182.16687 * 3 2 1 6 6 C 1.55446 * 100.99121 * 204.69051 * 5 3 2 7 7 C 1.54387 * 102.18582 * 34.04245 * 6 5 3 8 8 H 1.08995 * 109.83404 * 98.29803 * 7 6 5 9 9 C 1.50695 * 109.82860 * 219.18164 * 7 6 5 10 10 O 1.21281 * 120.00006 * 114.80977 * 9 7 6 11 11 N 1.34777 * 120.00197 * 294.81137 * 9 7 6 12 12 C 1.47087 * 120.85897 * 0.02562 * 11 9 7 13 13 C 1.53236 * 108.51641 * 231.11958 * 12 11 9 14 14 N 1.46900 * 109.36436 * 306.21109 * 13 12 11 15 15 C 1.46902 * 110.99957 * 187.24371 * 14 13 12 16 16 C 1.53945 * 113.73748 * 273.73900 * 15 14 13 17 17 N 1.47817 * 86.03591 * 222.08499 * 16 15 14 18 18 C 1.36940 * 134.45382 * 204.64669 * 17 16 15 19 19 H 1.08000 * 119.99612 * 173.34610 * 18 17 16 20 20 C 1.38809 * 120.00122 * 353.34585 * 18 17 16 21 21 N 1.31612 * 120.00350 * 5.06683 * 20 18 17 22 22 Si 1.86801 * 119.99712 * 185.06429 * 20 18 17 23 23 H 1.48498 * 109.47272 * 94.98825 * 22 20 18 24 24 H 1.48498 * 109.47026 * 214.98753 * 22 20 18 25 25 H 1.48500 * 109.47276 * 334.98861 * 22 20 18 26 26 C 1.47576 * 91.04964 * 24.55199 * 17 16 15 27 27 C 1.46897 * 111.26862 * 63.09155 * 14 13 12 28 28 C 1.47085 * 120.88148 * 180.02562 * 11 9 7 29 29 O 1.43238 * 107.65963 * 338.73649 * 7 6 5 30 30 H 1.09000 * 109.46702 * 299.99757 * 1 2 3 31 31 H 1.08998 * 109.47126 * 59.99970 * 1 2 3 32 32 H 1.09001 * 109.46980 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47207 * 240.00117 * 2 1 3 34 34 H 1.09004 * 109.47553 * 120.00013 * 2 1 3 35 35 H 1.09001 * 111.12344 * 322.55909 * 5 3 2 36 36 H 1.08996 * 111.12674 * 86.68019 * 5 3 2 37 37 H 1.08993 * 110.83728 * 275.89258 * 6 5 3 38 38 H 1.09006 * 110.92421 * 152.22576 * 6 5 3 39 39 H 1.09005 * 109.60459 * 111.42525 * 12 11 9 40 40 H 1.08996 * 109.65050 * 350.84382 * 12 11 9 41 41 H 1.09007 * 109.49228 * 186.24022 * 13 12 11 42 42 H 1.08998 * 109.49431 * 66.18507 * 13 12 11 43 43 H 1.09001 * 112.94889 * 45.32872 * 15 14 13 44 44 H 1.08999 * 113.77550 * 336.35071 * 16 15 14 45 45 H 1.09010 * 113.76838 * 107.75078 * 16 15 14 46 46 H 0.96996 * 120.00666 * 179.97438 * 21 20 18 47 47 H 1.09003 * 113.76813 * 221.15447 * 26 17 16 48 48 H 1.08998 * 113.77219 * 89.75369 * 26 17 16 49 49 H 1.08998 * 109.49207 * 56.85487 * 27 14 13 50 50 H 1.09000 * 109.49240 * 176.90819 * 27 14 13 51 51 H 1.08999 * 109.62815 * 9.14398 * 28 11 9 52 52 H 1.08996 * 109.62551 * 248.56218 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6218 1.9910 -0.8440 5 6 3.5883 1.4656 -0.0549 6 6 3.8871 2.8482 0.5897 7 6 2.7561 2.9726 1.6331 8 1 3.1269 2.6842 2.6167 9 6 2.2514 4.3919 1.6732 10 8 1.1153 4.6415 1.3297 11 7 3.0625 5.3841 2.0907 12 6 4.4437 5.1029 2.5109 13 6 4.6732 5.7394 3.8858 14 7 4.3186 7.1638 3.8284 15 6 4.6854 7.8483 5.0754 16 6 3.6054 7.7641 6.1693 17 7 3.9056 9.1875 6.4314 18 6 3.7717 10.0118 7.5167 19 1 4.1720 11.0144 7.4858 20 6 3.1214 9.5588 8.6563 21 7 2.7218 8.3071 8.7323 22 14 2.8137 10.7257 10.0821 23 1 1.4507 11.3032 9.9639 24 1 2.9272 9.9830 11.3630 25 1 3.8185 11.8188 10.0530 26 6 4.4094 9.3627 5.0554 27 6 2.8924 7.3462 3.5275 28 6 2.5898 6.7761 2.1380 29 8 1.6988 2.0920 1.2350 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.0145 0.6565 0.5382 36 1 3.9455 1.4254 -1.0839 37 1 3.8202 3.6443 -0.1517 38 1 4.8636 2.8489 1.0742 39 1 5.1398 5.5299 1.7889 40 1 4.5948 4.0255 2.5764 41 1 5.7223 5.6367 4.1636 42 1 4.0500 5.2391 4.6269 43 1 5.6848 7.5888 5.4245 44 1 2.6011 7.5908 5.7828 45 1 3.8659 7.1000 6.9935 46 1 2.2678 7.9904 9.5288 47 1 5.3107 9.9726 4.9919 48 1 3.6419 9.6601 4.3409 49 1 2.2936 6.8233 4.2732 50 1 2.6497 8.4087 3.5460 51 1 1.5154 6.8043 1.9567 52 1 3.1074 7.3644 1.3804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941424716.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:09 Heat of formation + Delta-G solvation = -6.213879 kcal Electronic energy + Delta-G solvation = -30484.264931 eV Core-core repulsion = 26486.063359 eV Total energy + Delta-G solvation = -3998.201572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.86361 -39.54291 -38.43873 -36.57681 -34.07914 -33.75339 -32.51707 -31.83988 -31.21678 -29.12767 -27.88645 -26.28962 -24.86537 -24.64925 -23.51608 -22.76888 -22.18015 -21.53759 -20.88272 -19.38820 -18.46413 -17.73596 -16.87625 -16.63068 -16.49765 -16.01618 -15.41500 -15.01199 -14.94288 -14.74511 -14.33742 -14.27994 -14.22892 -13.79255 -13.64500 -13.57347 -13.31357 -12.99724 -12.55216 -12.31498 -12.26740 -12.07605 -11.93568 -11.82945 -11.73855 -11.60783 -11.41128 -11.27071 -11.16553 -10.94973 -10.93434 -10.86097 -10.67796 -10.59514 -10.35912 -10.17903 -9.92353 -9.51139 -9.34166 -8.81245 -8.70631 -7.84918 -6.85933 -5.79589 -3.11308 2.50932 2.75244 3.38116 3.43123 3.45317 3.51834 3.99904 4.07205 4.21412 4.28741 4.48035 4.61128 4.71905 4.80783 4.86138 4.91445 5.00021 5.07323 5.11343 5.14685 5.20752 5.29148 5.31042 5.37158 5.41106 5.43550 5.49500 5.49770 5.57807 5.66372 5.67053 5.67456 5.73962 5.86987 5.89849 5.91577 6.05154 6.08396 6.18316 6.34770 6.41173 6.55828 6.62478 6.69463 6.99470 7.17626 7.31435 7.37146 7.51170 7.60157 7.95745 8.12793 9.02305 9.69011 10.58405 11.37780 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022295 B = 0.002258 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.586409 B =12398.317181 C =12909.051777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.076 3.924 4 H 0.072 0.928 5 C -0.151 4.151 6 C -0.146 4.146 7 C 0.067 3.933 8 H 0.106 0.894 9 C 0.502 3.498 10 O -0.527 6.527 11 N -0.609 5.609 12 C 0.110 3.890 13 C 0.039 3.961 14 N -0.529 5.529 15 C 0.034 3.966 16 C 0.135 3.865 17 N -0.610 5.610 18 C -0.223 4.223 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.126 3.874 27 C 0.037 3.963 28 C 0.118 3.882 29 O -0.345 6.345 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.041 0.959 43 H 0.099 0.901 44 H 0.033 0.967 45 H 0.064 0.936 46 H 0.253 0.747 47 H 0.045 0.955 48 H 0.037 0.963 49 H 0.048 0.952 50 H 0.093 0.907 51 H 0.092 0.908 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.144 -16.205 -20.093 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C 0.019 3.981 4 H 0.090 0.910 5 C -0.188 4.188 6 C -0.184 4.184 7 C 0.005 3.995 8 H 0.123 0.877 9 C 0.289 3.711 10 O -0.402 6.402 11 N -0.345 5.345 12 C -0.013 4.013 13 C -0.090 4.090 14 N -0.253 5.253 15 C -0.075 4.075 16 C 0.008 3.992 17 N -0.336 5.336 18 C -0.350 4.350 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.000 4.000 27 C -0.091 4.091 28 C -0.004 4.004 29 O -0.263 6.263 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.059 0.941 43 H 0.117 0.883 44 H 0.050 0.950 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.054 0.946 49 H 0.066 0.934 50 H 0.111 0.889 51 H 0.110 0.890 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.499 -15.817 -20.223 26.065 hybrid contribution -0.532 0.424 1.530 1.675 sum 3.968 -15.393 -18.693 24.538 Atomic orbital electron populations 1.21722 0.95080 1.01413 1.02683 1.21651 0.97127 0.94379 1.02541 1.23127 0.93549 0.93842 0.87628 0.91021 1.23360 0.95978 0.97161 1.02343 1.23208 0.98486 0.98516 0.98145 1.22599 0.88148 0.88435 1.00287 0.87693 1.20954 0.85688 0.87075 0.77389 1.90699 1.18418 1.83631 1.47501 1.48180 1.13278 1.07786 1.65237 1.22008 0.82517 1.00127 0.96658 1.22410 1.01630 0.89424 0.95521 1.62027 1.17402 1.10481 1.35388 1.24308 1.00125 0.95443 0.87577 1.22886 0.94359 0.87877 0.94048 1.45812 1.73838 1.07803 1.06185 1.19011 1.30654 0.95088 0.90291 0.90134 1.24829 1.00446 0.96653 0.98490 1.69833 1.44297 1.13860 1.28660 0.86128 0.78154 0.79904 0.81786 1.21610 1.21715 1.20499 1.22656 0.96543 0.93106 0.87732 1.22585 0.89119 1.02175 0.95246 1.21775 1.00960 0.80170 0.97508 1.88550 1.40887 1.57238 1.39585 0.91734 0.92828 0.92843 0.90765 0.91146 0.89812 0.89540 0.89900 0.88729 0.90373 0.89866 0.89573 0.94064 0.88299 0.94953 0.91777 0.93659 0.93684 0.94557 0.93378 0.88925 0.88998 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.83 37.16 0.37 -0.89 16 2 C -0.12 -0.87 5.68 -26.73 -0.15 -1.02 16 3 C 0.08 0.67 3.43 -25.70 -0.09 0.58 16 4 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.15 -0.92 6.57 -24.40 -0.16 -1.08 16 6 C -0.15 -1.01 5.40 -24.70 -0.13 -1.14 16 7 C 0.07 0.70 3.06 -27.16 -0.08 0.62 16 8 H 0.11 0.96 7.45 -51.93 -0.39 0.58 16 9 C 0.50 6.95 6.98 -10.99 -0.08 6.87 16 10 O -0.53 -9.57 15.98 -14.10 -0.23 -9.80 16 11 N -0.61 -7.53 3.01 -172.48 -0.52 -8.05 16 12 C 0.11 1.04 5.82 -3.60 -0.02 1.02 16 13 C 0.04 0.47 5.61 -3.70 -0.02 0.45 16 14 N -0.53 -7.81 4.76 -228.25 -1.09 -8.89 16 15 C 0.03 0.62 4.03 -69.92 -0.28 0.34 16 16 C 0.14 3.14 6.72 -2.84 -0.02 3.12 16 17 N -0.61 -15.62 3.70 -177.86 -0.66 -16.28 16 18 C -0.22 -6.28 10.70 -15.06 -0.16 -6.45 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 21 N -0.92 -27.58 11.51 55.49 0.64 -26.95 16 22 Si 0.91 22.31 29.56 -169.99 -5.02 17.29 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.13 2.55 8.42 -2.97 -0.02 2.53 16 27 C 0.04 0.57 4.47 -3.72 -0.02 0.56 16 28 C 0.12 1.59 6.60 -3.62 -0.02 1.56 16 29 O -0.34 -4.27 9.90 -54.88 -0.54 -4.82 16 30 H 0.06 0.66 7.91 -51.93 -0.41 0.25 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.43 8.06 -51.93 -0.42 0.01 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.63 7.84 -51.93 -0.41 0.22 16 38 H 0.09 0.44 7.02 -51.93 -0.36 0.07 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.58 4.65 -51.93 -0.24 0.34 16 41 H 0.09 0.91 8.04 -51.92 -0.42 0.49 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 1.76 8.04 -51.93 -0.42 1.34 16 44 H 0.03 0.79 5.65 -51.93 -0.29 0.50 16 45 H 0.06 1.67 7.37 -51.92 -0.38 1.29 16 46 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.04 0.72 6.22 -51.93 -0.32 0.40 16 49 H 0.05 0.86 6.45 -51.93 -0.33 0.52 16 50 H 0.09 1.50 6.06 -51.93 -0.31 1.18 16 51 H 0.09 1.35 7.06 -51.93 -0.37 0.98 16 52 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 393.91 15.07 5.94 5.94 Total: -1.00 -34.62 393.91 -11.33 -45.94 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -8.85 Total: -1.15 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -0.99 Total: 6.76 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -1.62 Total: -60.16 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.77 Total: -14.61 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.62 -11.33 -45.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941424716.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.729 kcal (2) G-P(sol) polarization free energy of solvation -34.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds