Wall clock time and date at job start Tue Mar 31 2020 19:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47016 * 2 1 4 4 H 1.08995 * 110.27635 * 304.36049 * 3 2 1 5 5 C 1.54946 * 110.31121 * 182.16687 * 3 2 1 6 6 C 1.55446 * 100.99121 * 204.69051 * 5 3 2 7 7 C 1.54387 * 102.18582 * 34.04245 * 6 5 3 8 8 H 1.08995 * 109.83404 * 98.29803 * 7 6 5 9 9 C 1.50695 * 109.82860 * 219.18164 * 7 6 5 10 10 O 1.21281 * 120.00006 * 114.80977 * 9 7 6 11 11 N 1.34777 * 120.00197 * 294.81137 * 9 7 6 12 12 C 1.47087 * 120.85897 * 0.02562 * 11 9 7 13 13 C 1.53236 * 108.51641 * 231.11958 * 12 11 9 14 14 N 1.46900 * 109.36436 * 306.21109 * 13 12 11 15 15 C 1.46902 * 110.99957 * 187.24371 * 14 13 12 16 16 C 1.53945 * 113.73748 * 273.73900 * 15 14 13 17 17 N 1.47817 * 86.03591 * 222.08499 * 16 15 14 18 18 C 1.36940 * 134.45382 * 204.64669 * 17 16 15 19 19 H 1.08000 * 119.99612 * 173.34610 * 18 17 16 20 20 C 1.38809 * 120.00122 * 353.34585 * 18 17 16 21 21 N 1.31612 * 120.00350 * 5.06683 * 20 18 17 22 22 Si 1.86801 * 119.99712 * 185.06429 * 20 18 17 23 23 H 1.48498 * 109.47272 * 94.98825 * 22 20 18 24 24 H 1.48498 * 109.47026 * 214.98753 * 22 20 18 25 25 H 1.48500 * 109.47276 * 334.98861 * 22 20 18 26 26 C 1.47576 * 91.04964 * 24.55199 * 17 16 15 27 27 C 1.46897 * 111.26862 * 63.09155 * 14 13 12 28 28 C 1.47085 * 120.88148 * 180.02562 * 11 9 7 29 29 O 1.43238 * 107.65963 * 338.73649 * 7 6 5 30 30 H 1.09000 * 109.46702 * 299.99757 * 1 2 3 31 31 H 1.08998 * 109.47126 * 59.99970 * 1 2 3 32 32 H 1.09001 * 109.46980 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47207 * 240.00117 * 2 1 3 34 34 H 1.09004 * 109.47553 * 120.00013 * 2 1 3 35 35 H 1.09001 * 111.12344 * 322.55909 * 5 3 2 36 36 H 1.08996 * 111.12674 * 86.68019 * 5 3 2 37 37 H 1.08993 * 110.83728 * 275.89258 * 6 5 3 38 38 H 1.09006 * 110.92421 * 152.22576 * 6 5 3 39 39 H 1.09005 * 109.60459 * 111.42525 * 12 11 9 40 40 H 1.08996 * 109.65050 * 350.84382 * 12 11 9 41 41 H 1.09007 * 109.49228 * 186.24022 * 13 12 11 42 42 H 1.08998 * 109.49431 * 66.18507 * 13 12 11 43 43 H 1.09001 * 112.94889 * 45.32872 * 15 14 13 44 44 H 1.08999 * 113.77550 * 336.35071 * 16 15 14 45 45 H 1.09010 * 113.76838 * 107.75078 * 16 15 14 46 46 H 0.96996 * 120.00666 * 179.97438 * 21 20 18 47 47 H 1.09003 * 113.76813 * 221.15447 * 26 17 16 48 48 H 1.08998 * 113.77219 * 89.75369 * 26 17 16 49 49 H 1.08998 * 109.49207 * 56.85487 * 27 14 13 50 50 H 1.09000 * 109.49240 * 176.90819 * 27 14 13 51 51 H 1.08999 * 109.62815 * 9.14398 * 28 11 9 52 52 H 1.08996 * 109.62551 * 248.56218 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6218 1.9910 -0.8440 5 6 3.5883 1.4656 -0.0549 6 6 3.8871 2.8482 0.5897 7 6 2.7561 2.9726 1.6331 8 1 3.1269 2.6842 2.6167 9 6 2.2514 4.3919 1.6732 10 8 1.1153 4.6415 1.3297 11 7 3.0625 5.3841 2.0907 12 6 4.4437 5.1029 2.5109 13 6 4.6732 5.7394 3.8858 14 7 4.3186 7.1638 3.8284 15 6 4.6854 7.8483 5.0754 16 6 3.6054 7.7641 6.1693 17 7 3.9056 9.1875 6.4314 18 6 3.7717 10.0118 7.5167 19 1 4.1720 11.0144 7.4858 20 6 3.1214 9.5588 8.6563 21 7 2.7218 8.3071 8.7323 22 14 2.8137 10.7257 10.0821 23 1 1.4507 11.3032 9.9639 24 1 2.9272 9.9830 11.3630 25 1 3.8185 11.8188 10.0530 26 6 4.4094 9.3627 5.0554 27 6 2.8924 7.3462 3.5275 28 6 2.5898 6.7761 2.1380 29 8 1.6988 2.0920 1.2350 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.0145 0.6565 0.5382 36 1 3.9455 1.4254 -1.0839 37 1 3.8202 3.6443 -0.1517 38 1 4.8636 2.8489 1.0742 39 1 5.1398 5.5299 1.7889 40 1 4.5948 4.0255 2.5764 41 1 5.7223 5.6367 4.1636 42 1 4.0500 5.2391 4.6269 43 1 5.6848 7.5888 5.4245 44 1 2.6011 7.5908 5.7828 45 1 3.8659 7.1000 6.9935 46 1 2.2678 7.9904 9.5288 47 1 5.3107 9.9726 4.9919 48 1 3.6419 9.6601 4.3409 49 1 2.2936 6.8233 4.2732 50 1 2.6497 8.4087 3.5460 51 1 1.5154 6.8043 1.9567 52 1 3.1074 7.3644 1.3804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941424716.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:08 Heat of formation + Delta-G solvation = -29.977678 kcal Electronic energy + Delta-G solvation = -30485.295407 eV Core-core repulsion = 26486.063359 eV Total energy + Delta-G solvation = -3999.232048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.81554 -40.75789 -39.59619 -37.91482 -35.32030 -34.59353 -33.86131 -33.16516 -32.20345 -30.16746 -29.33422 -27.71495 -26.64641 -25.53406 -24.64512 -24.27393 -22.97125 -22.42353 -21.75974 -20.63906 -19.74292 -18.74722 -18.68184 -17.60615 -17.35507 -17.08016 -16.89656 -16.72190 -16.17250 -15.87566 -15.65899 -15.50037 -15.18780 -14.91995 -14.53125 -14.30016 -14.20794 -14.01521 -13.80182 -13.72358 -13.45460 -13.33653 -13.22298 -12.96866 -12.83356 -12.76504 -12.69033 -12.44776 -12.26898 -12.18043 -12.02318 -11.97585 -11.91029 -11.77533 -11.74347 -11.49622 -11.37313 -11.18804 -10.88533 -10.29844 -9.82726 -9.26113 -8.88543 -7.95568 -5.28745 1.41786 1.44192 1.48831 1.53105 1.80291 2.42302 2.80756 2.84041 3.24467 3.32100 3.47612 3.50118 3.74057 3.82524 3.89595 3.96174 3.99809 4.10272 4.14587 4.21147 4.23290 4.33098 4.37007 4.45969 4.46195 4.53061 4.54863 4.60438 4.71078 4.81839 4.82518 4.87488 4.88380 4.92249 4.95736 4.97120 5.00720 5.06661 5.10136 5.15899 5.18568 5.28661 5.34168 5.41569 5.43904 5.45942 5.87073 5.96996 6.01704 6.15080 6.38065 6.86904 7.09246 7.56653 8.52681 9.21424 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022295 B = 0.002258 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.586409 B =12398.317181 C =12909.051777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C 0.063 3.937 4 H 0.056 0.944 5 C -0.139 4.139 6 C -0.138 4.138 7 C 0.064 3.936 8 H 0.121 0.879 9 C 0.494 3.506 10 O -0.584 6.584 11 N -0.608 5.608 12 C 0.113 3.887 13 C 0.033 3.967 14 N -0.513 5.513 15 C 0.069 3.931 16 C 0.135 3.865 17 N -0.641 5.641 18 C -0.232 4.232 19 H 0.087 0.913 20 C -0.070 4.070 21 N -0.955 5.955 22 Si 0.978 3.022 23 H -0.291 1.291 24 H -0.294 1.294 25 H -0.262 1.262 26 C 0.127 3.873 27 C 0.046 3.954 28 C 0.126 3.874 29 O -0.380 6.380 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.019 0.981 43 H 0.114 0.886 44 H 0.013 0.987 45 H 0.028 0.972 46 H 0.247 0.753 47 H 0.062 0.938 48 H 0.045 0.955 49 H 0.014 0.986 50 H 0.081 0.919 51 H 0.072 0.928 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.377 -17.053 -21.877 28.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C 0.006 3.994 4 H 0.074 0.926 5 C -0.176 4.176 6 C -0.176 4.176 7 C 0.003 3.997 8 H 0.139 0.861 9 C 0.283 3.717 10 O -0.463 6.463 11 N -0.342 5.342 12 C -0.008 4.008 13 C -0.095 4.095 14 N -0.237 5.237 15 C -0.041 4.041 16 C 0.008 3.992 17 N -0.368 5.368 18 C -0.361 4.361 19 H 0.105 0.895 20 C -0.263 4.263 21 N -0.604 5.604 22 Si 0.806 3.194 23 H -0.218 1.218 24 H -0.221 1.221 25 H -0.186 1.186 26 C 0.002 3.998 27 C -0.083 4.083 28 C 0.003 3.997 29 O -0.298 6.298 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.147 0.853 39 H 0.124 0.876 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.038 0.962 43 H 0.132 0.868 44 H 0.031 0.969 45 H 0.046 0.954 46 H 0.056 0.944 47 H 0.080 0.920 48 H 0.063 0.937 49 H 0.032 0.968 50 H 0.100 0.900 51 H 0.090 0.910 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.791 -16.662 -22.045 28.710 hybrid contribution -1.582 0.689 2.034 2.667 sum 6.209 -15.973 -20.011 26.346 Atomic orbital electron populations 1.21730 0.96414 1.01828 1.01096 1.21672 0.95966 0.93778 1.03866 1.23346 0.96065 0.94020 0.85921 0.92632 1.23362 0.93265 0.97116 1.03890 1.23276 0.98367 0.98845 0.97111 1.22799 0.88867 0.85675 1.02358 0.86145 1.21769 0.84990 0.88667 0.76231 1.90668 1.20879 1.84616 1.50161 1.48305 1.14439 1.06982 1.64474 1.22273 0.80983 1.02258 0.95296 1.22643 1.02785 0.87153 0.96963 1.62082 1.16558 1.12455 1.32566 1.23863 0.98691 0.94474 0.87031 1.22795 0.95230 0.86488 0.94726 1.46230 1.74068 1.08674 1.07841 1.19446 1.29745 0.95606 0.91279 0.89517 1.25699 1.01010 0.98185 1.01422 1.70035 1.45622 1.15672 1.29096 0.85058 0.78006 0.78140 0.78175 1.21787 1.22089 1.18650 1.22809 0.97010 0.94897 0.85106 1.22434 0.89052 1.01195 0.95618 1.21594 1.00258 0.81421 0.96447 1.88534 1.42554 1.57696 1.41045 0.94603 0.93136 0.91395 0.88175 0.90855 0.88131 0.87468 0.90433 0.85271 0.87630 0.86490 0.86779 0.96224 0.86826 0.96913 0.95388 0.94412 0.91956 0.93734 0.96794 0.90027 0.90997 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.83 71.98 0.71 -1.84 16 2 C -0.12 -1.52 5.68 30.59 0.17 -1.34 16 3 C 0.06 1.05 3.43 31.26 0.11 1.15 16 4 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 5 C -0.14 -1.18 6.57 32.10 0.21 -0.97 16 6 C -0.14 -1.40 5.40 31.91 0.17 -1.23 16 7 C 0.06 1.24 3.06 30.32 0.09 1.34 16 8 H 0.12 1.92 7.45 -2.39 -0.02 1.90 16 9 C 0.49 13.61 6.98 87.66 0.61 14.22 16 10 O -0.58 -22.26 15.98 15.76 0.25 -22.00 16 11 N -0.61 -14.24 3.01 -817.99 -2.46 -16.71 16 12 C 0.11 1.73 5.82 86.35 0.50 2.23 16 13 C 0.03 0.71 5.61 86.38 0.48 1.20 16 14 N -0.51 -14.32 4.76 -876.06 -4.17 -18.49 16 15 C 0.07 2.43 4.03 46.67 0.19 2.62 16 16 C 0.13 6.49 6.72 86.44 0.58 7.07 16 17 N -0.64 -33.29 3.70 -716.63 -2.65 -35.94 16 18 C -0.23 -13.24 10.70 84.03 0.90 -12.34 16 19 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 20 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 21 N -0.96 -59.46 11.51 21.65 0.25 -59.21 16 22 Si 0.98 46.64 29.56 68.60 2.03 48.67 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 26 C 0.13 5.01 8.42 86.49 0.73 5.74 16 27 C 0.05 1.43 4.47 86.37 0.39 1.82 16 28 C 0.13 3.35 6.60 86.34 0.57 3.92 16 29 O -0.38 -9.39 9.90 -130.19 -1.29 -10.68 16 30 H 0.03 0.78 7.91 -2.39 -0.02 0.76 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.10 0.57 8.06 -2.39 -0.02 0.55 16 36 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.08 0.91 7.84 -2.39 -0.02 0.89 16 38 H 0.13 0.43 7.02 -2.38 -0.02 0.41 16 39 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.12 1.05 4.65 -2.39 -0.01 1.04 16 41 H 0.11 1.92 8.04 -2.38 -0.02 1.90 16 42 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.11 3.77 8.04 -2.39 -0.02 3.75 16 44 H 0.01 0.68 5.65 -2.39 -0.01 0.66 16 45 H 0.03 1.52 7.37 -2.38 -0.02 1.51 16 46 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 47 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.05 1.72 6.22 -2.39 -0.01 1.71 16 49 H 0.01 0.53 6.45 -2.39 -0.02 0.51 16 50 H 0.08 2.70 6.06 -2.39 -0.01 2.69 16 51 H 0.07 2.23 7.06 -2.39 -0.02 2.21 16 52 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -81.25 393.91 -0.26 -81.51 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.90 Total: 12.92 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 6.88 Total: 19.93 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -9.03 Total: -130.34 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -1.04 Total: -32.69 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -81.25 -0.26 -81.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941424716.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.534 kcal (2) G-P(sol) polarization free energy of solvation -81.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds