Wall clock time and date at job start Tue Mar 31 2020 19:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47076 * 2 1 4 4 H 1.08996 * 109.87331 * 54.29748 * 3 2 1 5 5 C 1.54102 * 109.87980 * 175.30711 * 3 2 1 6 6 C 1.54811 * 104.18933 * 121.45243 * 5 3 2 7 7 C 1.54995 * 102.09346 * 20.87711 * 6 5 3 8 8 H 1.09000 * 110.61657 * 81.47645 * 7 6 5 9 9 C 1.50696 * 110.62071 * 204.32071 * 7 6 5 10 10 O 1.21279 * 120.00322 * 105.18980 * 9 7 6 11 11 N 1.34781 * 119.99839 * 285.19312 * 9 7 6 12 12 C 1.47071 * 120.88251 * 4.31677 * 11 9 7 13 13 C 1.53693 * 108.27965 * 128.75770 * 12 11 9 14 14 N 1.46900 * 109.25572 * 54.07979 * 13 12 11 15 15 C 1.46902 * 110.99629 * 172.61202 * 14 13 12 16 16 C 1.53943 * 113.74632 * 40.97619 * 15 14 13 17 17 N 1.47577 * 86.11917 * 222.04715 * 16 15 14 18 18 C 1.36936 * 134.49673 * 204.64056 * 17 16 15 19 19 H 1.07991 * 120.00536 * 179.97438 * 18 17 16 20 20 C 1.38815 * 119.99426 * 359.97438 * 18 17 16 21 21 N 1.31614 * 120.00270 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00000 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46771 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47049 * 119.99919 * 22 20 18 25 25 H 1.48500 * 109.47186 * 240.00342 * 22 20 18 26 26 C 1.47585 * 91.01696 * 24.64203 * 17 16 15 27 27 C 1.46891 * 111.26978 * 296.75797 * 14 13 12 28 28 C 1.47080 * 120.88025 * 184.59729 * 11 9 7 29 29 O 1.43748 * 109.87764 * 293.29084 * 3 2 1 30 30 H 1.08998 * 109.46585 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47029 * 300.00210 * 1 2 3 32 32 H 1.08995 * 109.47123 * 60.00492 * 1 2 3 33 33 H 1.09005 * 109.47132 * 119.99481 * 2 1 3 34 34 H 1.08994 * 109.47592 * 239.99812 * 2 1 3 35 35 H 1.08995 * 110.48517 * 240.12483 * 5 3 2 36 36 H 1.08994 * 110.48485 * 2.64150 * 5 3 2 37 37 H 1.08997 * 110.90911 * 139.08259 * 6 5 3 38 38 H 1.09000 * 110.90704 * 262.64837 * 6 5 3 39 39 H 1.09006 * 109.63019 * 248.52305 * 12 11 9 40 40 H 1.09002 * 109.62711 * 9.10204 * 12 11 9 41 41 H 1.09003 * 109.64378 * 294.07846 * 13 12 11 42 42 H 1.08993 * 109.44732 * 173.96213 * 13 12 11 43 43 H 1.09004 * 112.94266 * 172.71590 * 15 14 13 44 44 H 1.08996 * 113.76768 * 336.35227 * 16 15 14 45 45 H 1.09001 * 113.76587 * 107.74455 * 16 15 14 46 46 H 0.97004 * 120.00212 * 179.97438 * 21 20 18 47 47 H 1.08996 * 113.77150 * 221.06235 * 26 17 16 48 48 H 1.08995 * 113.87023 * 89.66801 * 26 17 16 49 49 H 1.09000 * 109.49749 * 303.14485 * 27 14 13 50 50 H 1.08998 * 109.49122 * 183.06489 * 27 14 13 51 51 H 1.08999 * 109.62863 * 350.89356 * 28 11 9 52 52 H 1.08995 * 109.63042 * 111.27808 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5995 1.9912 0.8324 5 6 3.5764 1.4551 0.1186 6 6 4.0488 2.2062 -1.1501 7 6 2.7763 2.9937 -1.5539 8 1 2.6866 3.9063 -0.9648 9 6 2.7955 3.3141 -3.0263 10 8 2.0829 2.6983 -3.7903 11 7 3.6046 4.2853 -3.4941 12 6 4.5447 4.9798 -2.6013 13 6 5.9399 4.9390 -3.2446 14 7 5.8613 5.4826 -4.6071 15 6 7.1999 5.6249 -5.1951 16 6 8.1401 4.4451 -4.8887 17 7 9.1836 5.4647 -4.6664 18 6 10.5515 5.4675 -4.7290 19 1 11.1001 6.3727 -4.5146 20 6 11.2331 4.3068 -5.0683 21 7 10.5646 3.2037 -5.3301 22 14 13.0992 4.3107 -5.1545 23 1 13.6073 5.6651 -4.8190 24 1 13.6415 3.3249 -4.1853 25 1 13.5320 3.9451 -6.5271 26 6 8.1608 6.4802 -4.3493 27 6 4.9962 4.6577 -5.4608 28 6 3.5666 4.6828 -4.9096 29 8 1.6990 2.0815 -1.2417 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 3.8853 1.9908 1.0161 36 1 3.9665 0.4375 0.1294 37 1 4.8690 2.8852 -0.9174 38 1 4.3373 1.5045 -1.9327 39 1 4.2286 6.0148 -2.4704 40 1 4.5709 4.4769 -1.6346 41 1 6.2954 3.9093 -3.2838 42 1 6.6302 5.5398 -2.6525 43 1 7.1739 5.9056 -6.2481 44 1 7.8700 3.8898 -3.9906 45 1 8.3310 3.8011 -5.7472 46 1 11.0409 2.3927 -5.5675 47 1 8.3680 7.4611 -4.7771 48 1 7.8955 6.5243 -3.2930 49 1 5.3649 3.6320 -5.4692 50 1 5.0017 5.0549 -6.4758 51 1 2.9459 3.9835 -5.4698 52 1 3.1551 5.6883 -4.9966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941424717.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:13 Heat of formation + Delta-G solvation = -4.596194 kcal Electronic energy + Delta-G solvation = -30706.707087 eV Core-core repulsion = 26708.575664 eV Total energy + Delta-G solvation = -3998.131424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.78684 -39.54877 -38.53683 -36.57733 -34.03831 -33.74013 -32.49485 -31.87040 -31.11799 -29.10509 -27.92982 -26.31737 -24.91873 -24.48237 -23.70159 -22.68797 -22.21563 -21.28954 -21.13934 -19.43113 -18.36706 -17.57270 -16.86109 -16.68968 -16.37904 -15.85789 -15.37583 -15.16754 -14.97782 -14.82937 -14.74298 -14.22311 -13.84223 -13.82018 -13.79262 -13.63627 -13.34973 -12.94210 -12.40702 -12.31578 -12.24601 -12.11386 -11.95884 -11.85351 -11.71235 -11.61709 -11.31796 -11.22603 -11.07837 -11.02610 -10.87185 -10.84685 -10.72063 -10.57076 -10.19792 -10.08125 -9.92330 -9.61740 -9.54378 -8.85247 -8.73335 -7.86599 -6.90232 -5.81254 -3.14189 2.45939 2.65132 3.35086 3.40491 3.43198 3.65937 4.06372 4.12681 4.27225 4.44786 4.48789 4.55983 4.77719 4.78366 4.88219 4.96960 4.98951 5.03109 5.14129 5.19876 5.22390 5.30027 5.36215 5.37782 5.44270 5.46165 5.52456 5.55056 5.62723 5.65803 5.70594 5.72624 5.77102 5.82171 5.92657 5.96449 6.06077 6.08738 6.13751 6.27819 6.36800 6.50415 6.58665 6.61699 6.95830 7.16557 7.29173 7.34260 7.48708 7.58003 7.93616 8.08690 8.99755 9.66208 10.54523 11.35313 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.002594 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.050676 B =10789.700481 C =11838.475201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.073 3.927 4 H 0.071 0.929 5 C -0.150 4.150 6 C -0.145 4.145 7 C 0.061 3.939 8 H 0.093 0.907 9 C 0.522 3.478 10 O -0.525 6.525 11 N -0.608 5.608 12 C 0.106 3.894 13 C 0.035 3.965 14 N -0.529 5.529 15 C 0.035 3.965 16 C 0.133 3.867 17 N -0.609 5.609 18 C -0.221 4.221 19 H 0.081 0.919 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.125 3.875 27 C 0.043 3.957 28 C 0.119 3.881 29 O -0.342 6.342 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.049 0.951 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.029 0.971 45 H 0.069 0.931 46 H 0.253 0.747 47 H 0.046 0.954 48 H 0.037 0.963 49 H 0.041 0.959 50 H 0.086 0.914 51 H 0.092 0.908 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.944 -0.402 11.095 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C 0.015 3.985 4 H 0.088 0.912 5 C -0.188 4.188 6 C -0.183 4.183 7 C 0.000 4.000 8 H 0.111 0.889 9 C 0.309 3.691 10 O -0.400 6.400 11 N -0.344 5.344 12 C -0.017 4.017 13 C -0.093 4.093 14 N -0.253 5.253 15 C -0.074 4.074 16 C 0.006 3.994 17 N -0.335 5.335 18 C -0.349 4.349 19 H 0.099 0.901 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.217 1.217 26 C -0.001 4.001 27 C -0.086 4.086 28 C -0.003 4.003 29 O -0.261 6.261 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.046 0.954 45 H 0.087 0.913 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.059 0.941 50 H 0.104 0.896 51 H 0.110 0.890 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.427 -0.450 10.527 21.227 hybrid contribution 1.776 -0.820 0.188 1.965 sum -16.651 -1.270 10.715 19.841 Atomic orbital electron populations 1.21725 0.95249 1.01519 1.02306 1.21720 0.96942 0.94626 1.02676 1.22876 0.94135 0.94363 0.87110 0.91151 1.23018 0.95229 1.02291 0.98276 1.23179 0.96819 0.99799 0.98506 1.22980 0.88409 0.94957 0.93692 0.88914 1.20133 0.79916 0.79426 0.89619 1.90703 1.41453 1.49576 1.58301 1.48087 1.38827 1.36823 1.10657 1.22173 0.88945 0.97801 0.92777 1.22670 0.95466 0.99932 0.91268 1.62020 1.12865 1.48709 1.01715 1.24302 0.84543 0.99751 0.98784 1.22881 0.85200 0.92339 0.98963 1.45777 1.00680 1.07094 1.79998 1.19051 0.79461 0.96176 1.40221 0.90114 1.24797 0.98078 0.95557 1.02073 1.69832 1.33801 1.00480 1.52718 0.86052 0.85019 0.77379 0.77351 1.20403 1.21766 1.21670 1.22680 0.87405 0.93806 0.96241 1.22394 0.92225 0.96652 0.97350 1.21746 0.97189 1.00921 0.80422 1.89053 1.40746 1.56573 1.39696 0.92832 0.92981 0.91804 0.90803 0.90998 0.90139 0.89797 0.88911 0.89696 0.90359 0.89710 0.93318 0.88842 0.88167 0.95383 0.91296 0.93723 0.93627 0.94560 0.94069 0.89574 0.88951 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.83 37.16 0.37 -0.89 16 2 C -0.12 -1.02 5.42 -26.73 -0.14 -1.17 16 3 C 0.07 0.66 3.41 -26.15 -0.09 0.57 16 4 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 5 C -0.15 -1.16 6.64 -25.20 -0.17 -1.33 16 6 C -0.15 -1.37 6.04 -24.72 -0.15 -1.52 16 7 C 0.06 0.67 2.75 -26.83 -0.07 0.60 16 8 H 0.09 0.81 7.61 -51.93 -0.40 0.42 16 9 C 0.52 7.29 7.08 -10.99 -0.08 7.21 16 10 O -0.53 -9.41 16.05 -13.19 -0.21 -9.62 16 11 N -0.61 -7.53 3.00 -172.19 -0.52 -8.05 16 12 C 0.11 1.11 6.31 -3.37 -0.02 1.08 16 13 C 0.04 0.47 4.59 -3.46 -0.02 0.46 16 14 N -0.53 -7.71 4.76 -227.94 -1.09 -8.80 16 15 C 0.03 0.63 4.05 -69.91 -0.28 0.34 16 16 C 0.13 3.02 6.81 -2.98 -0.02 3.00 16 17 N -0.61 -15.21 3.70 -178.08 -0.66 -15.87 16 18 C -0.22 -6.12 10.70 -15.06 -0.16 -6.28 16 19 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -27.12 11.38 55.49 0.63 -26.49 16 22 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.12 2.45 8.41 -2.97 -0.02 2.42 16 27 C 0.04 0.58 5.58 -3.70 -0.02 0.56 16 28 C 0.12 1.48 6.61 -3.60 -0.02 1.46 16 29 O -0.34 -4.33 10.15 -53.98 -0.55 -4.88 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.06 0.65 7.89 -51.93 -0.41 0.24 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.61 7.70 -51.93 -0.40 0.21 16 37 H 0.09 0.74 6.49 -51.93 -0.34 0.40 16 38 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.70 4.25 -51.93 -0.22 0.48 16 41 H 0.05 0.75 6.40 -51.93 -0.33 0.42 16 42 H 0.09 1.29 5.90 -51.93 -0.31 0.98 16 43 H 0.10 1.82 8.08 -51.93 -0.42 1.40 16 44 H 0.03 0.65 5.71 -51.93 -0.30 0.36 16 45 H 0.07 1.79 7.15 -51.93 -0.37 1.42 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.04 0.67 6.04 -51.93 -0.31 0.36 16 49 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.09 1.07 8.07 -51.93 -0.42 0.65 16 51 H 0.09 1.22 7.04 -51.93 -0.37 0.85 16 52 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -33.58 393.58 -11.26 -44.84 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.78 Total: -0.14 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -1.00 Total: 6.16 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -1.63 Total: -59.21 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.76 Total: -14.50 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.58 -11.26 -44.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941424717.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.247 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds