Wall clock time and date at job start Tue Mar 31 2020 19:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47076 * 2 1 4 4 H 1.08996 * 109.87331 * 54.29748 * 3 2 1 5 5 C 1.54102 * 109.87980 * 175.30711 * 3 2 1 6 6 C 1.54811 * 104.18933 * 121.45243 * 5 3 2 7 7 C 1.54995 * 102.09346 * 20.87711 * 6 5 3 8 8 H 1.09000 * 110.61657 * 81.47645 * 7 6 5 9 9 C 1.50696 * 110.62071 * 204.32071 * 7 6 5 10 10 O 1.21279 * 120.00322 * 105.18980 * 9 7 6 11 11 N 1.34781 * 119.99839 * 285.19312 * 9 7 6 12 12 C 1.47071 * 120.88251 * 4.31677 * 11 9 7 13 13 C 1.53693 * 108.27965 * 128.75770 * 12 11 9 14 14 N 1.46900 * 109.25572 * 54.07979 * 13 12 11 15 15 C 1.46902 * 110.99629 * 172.61202 * 14 13 12 16 16 C 1.53943 * 113.74632 * 40.97619 * 15 14 13 17 17 N 1.47577 * 86.11917 * 222.04715 * 16 15 14 18 18 C 1.36936 * 134.49673 * 204.64056 * 17 16 15 19 19 H 1.07991 * 120.00536 * 179.97438 * 18 17 16 20 20 C 1.38815 * 119.99426 * 359.97438 * 18 17 16 21 21 N 1.31614 * 120.00270 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00000 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46771 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47049 * 119.99919 * 22 20 18 25 25 H 1.48500 * 109.47186 * 240.00342 * 22 20 18 26 26 C 1.47585 * 91.01696 * 24.64203 * 17 16 15 27 27 C 1.46891 * 111.26978 * 296.75797 * 14 13 12 28 28 C 1.47080 * 120.88025 * 184.59729 * 11 9 7 29 29 O 1.43748 * 109.87764 * 293.29084 * 3 2 1 30 30 H 1.08998 * 109.46585 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47029 * 300.00210 * 1 2 3 32 32 H 1.08995 * 109.47123 * 60.00492 * 1 2 3 33 33 H 1.09005 * 109.47132 * 119.99481 * 2 1 3 34 34 H 1.08994 * 109.47592 * 239.99812 * 2 1 3 35 35 H 1.08995 * 110.48517 * 240.12483 * 5 3 2 36 36 H 1.08994 * 110.48485 * 2.64150 * 5 3 2 37 37 H 1.08997 * 110.90911 * 139.08259 * 6 5 3 38 38 H 1.09000 * 110.90704 * 262.64837 * 6 5 3 39 39 H 1.09006 * 109.63019 * 248.52305 * 12 11 9 40 40 H 1.09002 * 109.62711 * 9.10204 * 12 11 9 41 41 H 1.09003 * 109.64378 * 294.07846 * 13 12 11 42 42 H 1.08993 * 109.44732 * 173.96213 * 13 12 11 43 43 H 1.09004 * 112.94266 * 172.71590 * 15 14 13 44 44 H 1.08996 * 113.76768 * 336.35227 * 16 15 14 45 45 H 1.09001 * 113.76587 * 107.74455 * 16 15 14 46 46 H 0.97004 * 120.00212 * 179.97438 * 21 20 18 47 47 H 1.08996 * 113.77150 * 221.06235 * 26 17 16 48 48 H 1.08995 * 113.87023 * 89.66801 * 26 17 16 49 49 H 1.09000 * 109.49749 * 303.14485 * 27 14 13 50 50 H 1.08998 * 109.49122 * 183.06489 * 27 14 13 51 51 H 1.08999 * 109.62863 * 350.89356 * 28 11 9 52 52 H 1.08995 * 109.63042 * 111.27808 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5995 1.9912 0.8324 5 6 3.5764 1.4551 0.1186 6 6 4.0488 2.2062 -1.1501 7 6 2.7763 2.9937 -1.5539 8 1 2.6866 3.9063 -0.9648 9 6 2.7955 3.3141 -3.0263 10 8 2.0829 2.6983 -3.7903 11 7 3.6046 4.2853 -3.4941 12 6 4.5447 4.9798 -2.6013 13 6 5.9399 4.9390 -3.2446 14 7 5.8613 5.4826 -4.6071 15 6 7.1999 5.6249 -5.1951 16 6 8.1401 4.4451 -4.8887 17 7 9.1836 5.4647 -4.6664 18 6 10.5515 5.4675 -4.7290 19 1 11.1001 6.3727 -4.5146 20 6 11.2331 4.3068 -5.0683 21 7 10.5646 3.2037 -5.3301 22 14 13.0992 4.3107 -5.1545 23 1 13.6073 5.6651 -4.8190 24 1 13.6415 3.3249 -4.1853 25 1 13.5320 3.9451 -6.5271 26 6 8.1608 6.4802 -4.3493 27 6 4.9962 4.6577 -5.4608 28 6 3.5666 4.6828 -4.9096 29 8 1.6990 2.0815 -1.2417 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 3.8853 1.9908 1.0161 36 1 3.9665 0.4375 0.1294 37 1 4.8690 2.8852 -0.9174 38 1 4.3373 1.5045 -1.9327 39 1 4.2286 6.0148 -2.4704 40 1 4.5709 4.4769 -1.6346 41 1 6.2954 3.9093 -3.2838 42 1 6.6302 5.5398 -2.6525 43 1 7.1739 5.9056 -6.2481 44 1 7.8700 3.8898 -3.9906 45 1 8.3310 3.8011 -5.7472 46 1 11.0409 2.3927 -5.5675 47 1 8.3680 7.4611 -4.7771 48 1 7.8955 6.5243 -3.2930 49 1 5.3649 3.6320 -5.4692 50 1 5.0017 5.0549 -6.4758 51 1 2.9459 3.9835 -5.4698 52 1 3.1551 5.6883 -4.9966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941424717.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:12 Heat of formation + Delta-G solvation = -26.927037 kcal Electronic energy + Delta-G solvation = -30707.675426 eV Core-core repulsion = 26708.575664 eV Total energy + Delta-G solvation = -3999.099762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.78393 -40.74150 -39.70260 -37.91438 -35.30580 -34.58687 -33.88368 -33.17017 -32.15467 -30.12963 -29.40487 -27.70592 -26.62562 -25.41252 -24.80678 -24.26073 -23.00266 -22.42031 -21.86299 -20.74653 -19.65624 -18.75838 -18.53203 -17.55832 -17.36378 -17.00290 -16.87804 -16.47570 -16.24224 -16.12016 -15.66394 -15.60146 -15.37678 -14.71904 -14.52344 -14.43904 -14.38934 -13.97345 -13.82768 -13.81199 -13.44282 -13.36841 -13.19836 -12.95115 -12.86031 -12.71370 -12.67009 -12.45925 -12.25732 -12.18911 -12.07683 -11.99513 -11.83496 -11.73856 -11.72935 -11.47437 -11.37497 -10.96070 -10.86740 -10.56960 -9.84192 -9.26220 -8.86082 -7.91856 -5.25850 1.42323 1.44263 1.44916 1.55425 1.69239 2.43863 2.78511 2.92014 3.28422 3.29730 3.48569 3.52544 3.79685 3.82572 3.84912 3.89473 3.98196 4.05791 4.11669 4.16489 4.23467 4.27996 4.35544 4.37777 4.45620 4.47410 4.56778 4.64717 4.68499 4.75959 4.78282 4.84623 4.88179 4.90978 4.95372 4.98755 5.00465 5.06588 5.09502 5.13149 5.22853 5.24531 5.37666 5.39474 5.41546 5.49201 5.86529 5.90026 6.05782 6.11686 6.31876 6.89751 7.03958 7.59477 8.54433 9.24214 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.002594 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.050676 B =10789.700481 C =11838.475201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.066 3.934 4 H 0.090 0.910 5 C -0.144 4.144 6 C -0.144 4.144 7 C 0.062 3.938 8 H 0.126 0.874 9 C 0.516 3.484 10 O -0.576 6.576 11 N -0.607 5.607 12 C 0.113 3.887 13 C 0.035 3.965 14 N -0.514 5.514 15 C 0.064 3.936 16 C 0.134 3.866 17 N -0.640 5.640 18 C -0.228 4.228 19 H 0.087 0.913 20 C -0.071 4.071 21 N -0.956 5.956 22 Si 0.978 3.022 23 H -0.262 1.262 24 H -0.294 1.294 25 H -0.294 1.294 26 C 0.130 3.870 27 C 0.046 3.954 28 C 0.124 3.876 29 O -0.376 6.376 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.056 0.944 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.023 0.977 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.022 0.978 45 H 0.026 0.974 46 H 0.246 0.754 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.015 0.985 50 H 0.099 0.901 51 H 0.080 0.920 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.243 1.651 13.523 22.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C 0.009 3.991 4 H 0.108 0.892 5 C -0.181 4.181 6 C -0.182 4.182 7 C 0.001 3.999 8 H 0.143 0.857 9 C 0.304 3.696 10 O -0.455 6.455 11 N -0.341 5.341 12 C -0.009 4.009 13 C -0.094 4.094 14 N -0.237 5.237 15 C -0.046 4.046 16 C 0.006 3.994 17 N -0.367 5.367 18 C -0.357 4.357 19 H 0.105 0.895 20 C -0.263 4.263 21 N -0.606 5.606 22 Si 0.806 3.194 23 H -0.186 1.186 24 H -0.221 1.221 25 H -0.221 1.221 26 C 0.005 3.995 27 C -0.083 4.083 28 C 0.001 3.999 29 O -0.295 6.295 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.075 0.925 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.041 0.959 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.039 0.961 45 H 0.044 0.956 46 H 0.055 0.945 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.033 0.967 50 H 0.117 0.883 51 H 0.099 0.901 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.735 1.658 12.985 22.855 hybrid contribution 1.814 -1.453 -0.568 2.393 sum -16.921 0.205 12.417 20.989 Atomic orbital electron populations 1.21706 0.95402 1.01861 1.01658 1.21772 0.96855 0.94687 1.02807 1.23119 0.95183 0.94447 0.86319 0.89219 1.23043 0.94139 1.02634 0.98293 1.23180 0.96760 0.99699 0.98599 1.23127 0.88776 0.96229 0.91726 0.85669 1.20793 0.79186 0.78749 0.90860 1.90675 1.43686 1.51318 1.59811 1.48207 1.38619 1.36403 1.10905 1.22304 0.86280 0.99355 0.92955 1.22715 0.97677 0.98340 0.90661 1.62081 1.10555 1.48811 1.02293 1.23856 0.85567 0.96260 0.98886 1.22793 0.86574 0.92971 0.97022 1.46156 1.00767 1.09347 1.80437 1.19463 0.81208 0.96259 1.38721 0.89504 1.25644 1.02504 0.95439 1.02756 1.70038 1.35189 1.00876 1.54452 0.85012 0.79808 0.77864 0.76683 1.18588 1.22082 1.22145 1.22830 0.85702 0.93358 0.97583 1.22414 0.92671 0.95029 0.98161 1.21695 0.95830 1.01743 0.80588 1.89037 1.41679 1.57322 1.41469 0.92063 0.91576 0.94393 0.88365 0.93089 0.87322 0.89610 0.87002 0.92528 0.87876 0.87059 0.95853 0.88488 0.88062 0.96068 0.95585 0.94519 0.92354 0.92403 0.96710 0.88278 0.90130 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.83 71.98 0.71 -1.68 16 2 C -0.12 -1.95 5.42 30.60 0.17 -1.78 16 3 C 0.07 1.07 3.41 30.97 0.11 1.18 16 4 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 5 C -0.14 -1.86 6.64 31.59 0.21 -1.66 16 6 C -0.14 -2.52 6.04 31.89 0.19 -2.32 16 7 C 0.06 1.27 2.75 30.53 0.08 1.35 16 8 H 0.13 1.73 7.61 -2.39 -0.02 1.71 16 9 C 0.52 14.18 7.08 87.65 0.62 14.80 16 10 O -0.58 -21.34 16.05 14.90 0.24 -21.11 16 11 N -0.61 -14.19 3.00 -817.07 -2.45 -16.64 16 12 C 0.11 2.01 6.31 86.50 0.55 2.55 16 13 C 0.03 0.87 4.59 86.54 0.40 1.27 16 14 N -0.51 -14.17 4.76 -875.07 -4.17 -18.34 16 15 C 0.06 2.24 4.05 46.67 0.19 2.43 16 16 C 0.13 6.22 6.81 86.48 0.59 6.81 16 17 N -0.64 -31.98 3.70 -717.33 -2.65 -34.63 16 18 C -0.23 -12.60 10.70 84.03 0.90 -11.70 16 19 H 0.09 4.56 7.83 -2.92 -0.02 4.53 16 20 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 21 N -0.96 -58.16 11.38 21.65 0.25 -57.91 16 22 Si 0.98 45.54 29.55 68.60 2.03 47.57 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 26 C 0.13 4.85 8.41 86.48 0.73 5.58 16 27 C 0.05 1.22 5.58 86.39 0.48 1.71 16 28 C 0.12 2.94 6.61 86.35 0.57 3.51 16 29 O -0.38 -9.28 10.15 -131.05 -1.33 -10.61 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.04 0.79 7.89 -2.39 -0.02 0.78 16 33 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.09 1.09 7.70 -2.39 -0.02 1.07 16 37 H 0.11 1.47 6.49 -2.39 -0.02 1.45 16 38 H 0.06 1.30 8.05 -2.39 -0.02 1.28 16 39 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.11 1.42 4.25 -2.39 -0.01 1.41 16 41 H 0.02 0.72 6.40 -2.39 -0.02 0.70 16 42 H 0.10 2.41 5.90 -2.39 -0.01 2.39 16 43 H 0.10 3.58 8.08 -2.38 -0.02 3.56 16 44 H 0.02 1.03 5.71 -2.39 -0.01 1.01 16 45 H 0.03 1.42 7.15 -2.39 -0.02 1.40 16 46 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 47 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.06 1.96 6.04 -2.39 -0.01 1.94 16 49 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.10 2.38 8.07 -2.39 -0.02 2.36 16 51 H 0.08 2.15 7.04 -2.39 -0.02 2.14 16 52 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -76.61 393.58 -0.24 -76.85 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.90 Total: 16.33 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 6.95 Total: 18.48 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -9.03 Total: -127.52 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.09 Total: -31.71 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -76.61 -0.24 -76.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941424717.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.922 kcal (2) G-P(sol) polarization free energy of solvation -76.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds