Wall clock time and date at job start Tue Mar 31 2020 19:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46684 * 2 1 4 4 H 1.08994 * 110.67515 * 307.96555 * 3 2 1 5 5 C 1.54992 * 110.61543 * 184.99609 * 3 2 1 6 6 C 1.54809 * 102.09468 * 204.47632 * 5 3 2 7 7 C 1.54106 * 104.18678 * 20.88100 * 6 5 3 8 8 H 1.08989 * 109.88043 * 242.45584 * 7 6 5 9 9 C 1.50699 * 109.87743 * 121.45061 * 7 6 5 10 10 O 1.21276 * 120.00539 * 245.30996 * 9 7 6 11 11 N 1.34780 * 119.99813 * 65.31026 * 9 7 6 12 12 C 1.47082 * 120.88308 * 179.97438 * 11 9 7 13 13 C 1.53247 * 108.52016 * 231.16276 * 12 11 9 14 14 N 1.46902 * 109.33984 * 306.17090 * 13 12 11 15 15 C 1.46902 * 110.99594 * 187.25433 * 14 13 12 16 16 C 1.53494 * 114.20143 * 179.97438 * 15 14 13 17 17 N 1.47070 * 87.98508 * 220.34514 * 16 15 14 18 18 C 1.36929 * 136.05777 * 207.08563 * 17 16 15 19 19 H 1.08004 * 120.00341 * 0.27862 * 18 17 16 20 20 C 1.38815 * 120.00031 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99958 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00489 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00506 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00336 * 22 20 18 26 26 C 1.47067 * 87.88333 * 27.34295 * 17 16 15 27 27 C 1.46894 * 111.27049 * 63.10468 * 14 13 12 28 28 C 1.47082 * 120.88172 * 359.97438 * 11 9 7 29 29 O 1.43747 * 107.41545 * 1.95874 * 7 6 5 30 30 H 1.09004 * 109.47541 * 60.00022 * 1 2 3 31 31 H 1.09004 * 109.47127 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47707 * 299.99913 * 1 2 3 33 33 H 1.08997 * 109.47305 * 240.00086 * 2 1 3 34 34 H 1.09002 * 109.47046 * 119.99808 * 2 1 3 35 35 H 1.08997 * 110.90828 * 86.27958 * 5 3 2 36 36 H 1.08997 * 110.94267 * 322.68725 * 5 3 2 37 37 H 1.08997 * 110.48847 * 262.21056 * 6 5 3 38 38 H 1.08995 * 110.49172 * 139.55862 * 6 5 3 39 39 H 1.09000 * 109.62869 * 111.45718 * 12 11 9 40 40 H 1.08997 * 109.78781 * 350.96415 * 12 11 9 41 41 H 1.08998 * 109.48910 * 186.20915 * 13 12 11 42 42 H 1.09002 * 109.48877 * 66.12825 * 13 12 11 43 43 H 1.08994 * 113.28013 * 313.06108 * 15 14 13 44 44 H 1.09004 * 113.46541 * 105.56441 * 16 15 14 45 45 H 1.09001 * 113.47090 * 335.12652 * 16 15 14 46 46 H 0.97000 * 120.00284 * 179.97438 * 21 20 18 47 47 H 1.08995 * 113.46483 * 87.43868 * 26 17 16 48 48 H 1.08999 * 113.46675 * 217.88048 * 26 17 16 49 49 H 1.09005 * 109.49239 * 56.85217 * 27 14 13 50 50 H 1.08999 * 109.49431 * 176.93559 * 27 14 13 51 51 H 1.09008 * 109.62781 * 248.54875 * 28 11 9 52 52 H 1.09006 * 109.63025 * 8.92668 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5766 2.0145 -0.8039 5 6 3.5843 1.4755 -0.1263 6 6 3.9331 2.8410 0.5142 7 6 2.7070 3.1731 1.3867 8 1 2.2331 4.0865 1.0277 9 6 3.1315 3.3463 2.8223 10 8 2.7442 2.5675 3.6674 11 7 3.9415 4.3669 3.1670 12 6 4.3674 4.5546 4.5623 13 6 4.0844 6.0055 4.9665 14 7 4.7143 6.9122 3.9975 15 6 4.6135 8.3090 4.4410 16 6 5.2507 9.3220 3.4798 17 7 5.7650 10.0375 4.6574 18 6 6.1110 11.3289 4.9530 19 1 6.0171 12.0988 4.2013 20 6 6.5765 11.6499 6.2208 21 7 6.6858 10.7128 7.1385 22 14 7.0478 13.4119 6.6243 23 1 5.8608 14.1342 7.1483 24 1 8.1216 13.4145 7.6500 25 1 7.5357 14.0877 5.3952 26 6 5.7503 8.7542 5.3756 27 6 4.1384 6.7427 2.6568 28 6 4.4232 5.3224 2.1579 29 8 1.7902 2.0713 1.2777 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8897 1.4472 -1.1723 36 1 4.0384 0.6568 0.4318 37 1 4.0699 3.5999 -0.2560 38 1 4.8281 2.7558 1.1305 39 1 5.4347 4.3517 4.6498 40 1 3.8116 3.8785 5.2119 41 1 4.4937 6.1928 5.9593 42 1 3.0079 6.1764 4.9782 43 1 3.6145 8.5821 4.7807 44 1 4.5214 9.8956 2.9077 45 1 6.0348 8.8940 2.8553 46 1 7.0114 10.9370 8.0242 47 1 6.6661 8.1765 5.2508 48 1 5.4467 8.8440 6.4186 49 1 3.0611 6.9034 2.7007 50 1 4.5868 7.4648 1.9744 51 1 5.4960 5.1933 2.0140 52 1 3.9041 5.1516 1.2147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941424718.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:16 Heat of formation + Delta-G solvation = -7.200247 kcal Electronic energy + Delta-G solvation = -30145.846609 eV Core-core repulsion = 26147.602265 eV Total energy + Delta-G solvation = -3998.244344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.87704 -39.43154 -38.44351 -36.80533 -34.20136 -33.86483 -32.54055 -31.91162 -31.26942 -29.21179 -27.97435 -26.35797 -24.97901 -24.52786 -23.18438 -22.79627 -22.18151 -21.38325 -21.05483 -19.29719 -19.04867 -17.56041 -16.96841 -16.72620 -16.63785 -15.90208 -15.19410 -14.99451 -14.91750 -14.81621 -14.72303 -14.27474 -14.13471 -13.99165 -13.83630 -13.60177 -13.39146 -13.01740 -12.69251 -12.43226 -12.16001 -12.11858 -12.07915 -11.87130 -11.64315 -11.50587 -11.39379 -11.29305 -11.18516 -11.10519 -11.00407 -10.98020 -10.81818 -10.64261 -10.33900 -10.05084 -9.79410 -9.55825 -9.20752 -8.86052 -8.78026 -8.04356 -6.89537 -5.78321 -3.11053 2.44082 2.62231 3.38155 3.42468 3.45013 3.52913 3.98937 4.06812 4.16254 4.37132 4.41754 4.47620 4.70263 4.77717 4.82169 4.86539 4.90564 4.93813 5.07839 5.12795 5.19660 5.24443 5.30298 5.33918 5.37598 5.41123 5.43420 5.52114 5.53839 5.60579 5.63252 5.64434 5.68817 5.80132 5.80801 5.90831 5.91380 5.98352 6.05485 6.31221 6.35156 6.53213 6.58656 6.62562 7.03081 7.22631 7.26597 7.27497 7.52947 7.65141 7.96539 8.04683 9.02228 9.68493 10.62509 11.39217 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036815 B = 0.001985 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.370080 B =14099.054478 C =14416.635729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.072 3.928 4 H 0.073 0.927 5 C -0.150 4.150 6 C -0.147 4.147 7 C 0.062 3.938 8 H 0.093 0.907 9 C 0.515 3.485 10 O -0.525 6.525 11 N -0.609 5.609 12 C 0.119 3.881 13 C 0.044 3.956 14 N -0.522 5.522 15 C 0.018 3.982 16 C 0.128 3.872 17 N -0.610 5.610 18 C -0.217 4.217 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.919 5.919 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.173 3.827 27 C 0.039 3.961 28 C 0.110 3.890 29 O -0.342 6.342 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.034 0.966 43 H 0.066 0.934 44 H 0.034 0.966 45 H 0.040 0.960 46 H 0.254 0.746 47 H 0.035 0.965 48 H 0.068 0.932 49 H 0.034 0.966 50 H 0.091 0.909 51 H 0.081 0.919 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.950 -19.784 -17.099 27.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.015 3.985 4 H 0.091 0.909 5 C -0.187 4.187 6 C -0.185 4.185 7 C 0.001 3.999 8 H 0.110 0.890 9 C 0.301 3.699 10 O -0.400 6.400 11 N -0.345 5.345 12 C -0.004 4.004 13 C -0.085 4.085 14 N -0.247 5.247 15 C -0.090 4.090 16 C 0.002 3.998 17 N -0.336 5.336 18 C -0.345 4.345 19 H 0.099 0.901 20 C -0.205 4.205 21 N -0.566 5.566 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.047 3.953 27 C -0.090 4.090 28 C -0.013 4.013 29 O -0.260 6.260 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.052 0.948 43 H 0.084 0.916 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.086 0.914 49 H 0.052 0.948 50 H 0.109 0.891 51 H 0.099 0.901 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.705 -20.102 -16.287 26.995 hybrid contribution -0.284 1.388 0.111 1.421 sum -7.990 -18.715 -16.176 25.995 Atomic orbital electron populations 1.21742 0.95150 1.01691 1.02328 1.21550 0.96872 0.94133 1.02880 1.23333 0.94193 0.94644 0.86341 0.90894 1.23188 0.96093 0.97517 1.01924 1.22990 0.97926 0.98341 0.99231 1.22574 0.91465 0.92537 0.93351 0.88968 1.20421 0.78379 0.80783 0.90271 1.90703 1.54623 1.43208 1.51503 1.48145 1.48684 1.27870 1.09817 1.21756 1.00731 0.96504 0.81371 1.22430 0.97175 0.91599 0.97290 1.62161 1.55442 1.06041 1.01099 1.24140 0.99220 0.84587 1.01070 1.22411 0.95078 0.90839 0.91521 1.45373 1.76553 1.03113 1.08590 1.18892 1.37281 0.81896 0.96384 0.90106 1.24810 1.01629 0.97887 0.96135 1.69828 1.51569 1.31240 1.03915 0.86097 0.77895 0.83773 0.77845 1.21521 1.21583 1.20647 1.22088 0.92486 0.84380 0.96343 1.22433 0.97817 0.96043 0.92678 1.21994 1.00607 0.88203 0.90541 1.89068 1.55889 1.44305 1.36763 0.92882 0.92673 0.91876 0.90590 0.90810 0.89709 0.90116 0.89329 0.89719 0.90486 0.88910 0.88931 0.94765 0.91595 0.94739 0.94270 0.93596 0.94768 0.91396 0.94768 0.89117 0.90117 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.86 37.16 0.37 -0.71 16 2 C -0.12 -0.82 5.69 -26.73 -0.15 -0.98 16 3 C 0.07 0.57 3.29 -25.68 -0.08 0.48 16 4 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 5 C -0.15 -0.96 6.59 -24.73 -0.16 -1.13 16 6 C -0.15 -1.02 5.11 -25.20 -0.13 -1.15 16 7 C 0.06 0.62 2.95 -27.31 -0.08 0.54 16 8 H 0.09 0.77 7.46 -51.94 -0.39 0.38 16 9 C 0.51 6.76 6.89 -10.98 -0.08 6.69 16 10 O -0.53 -9.09 15.98 -14.01 -0.22 -9.32 16 11 N -0.61 -7.17 3.01 -172.47 -0.52 -7.69 16 12 C 0.12 1.50 6.59 -3.60 -0.02 1.47 16 13 C 0.04 0.61 5.61 -3.70 -0.02 0.59 16 14 N -0.52 -7.75 4.61 -225.97 -1.04 -8.79 16 15 C 0.02 0.34 3.55 -67.46 -0.24 0.10 16 16 C 0.13 2.56 7.12 -8.51 -0.06 2.50 16 17 N -0.61 -15.65 3.78 -184.62 -0.70 -16.35 16 18 C -0.22 -6.09 10.75 -15.06 -0.16 -6.25 16 19 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -27.28 11.50 55.49 0.64 -26.64 16 22 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.17 4.05 7.23 -8.37 -0.06 3.99 16 27 C 0.04 0.46 5.46 -3.72 -0.02 0.44 16 28 C 0.11 1.04 5.75 -3.62 -0.02 1.02 16 29 O -0.34 -4.02 10.31 -54.80 -0.57 -4.58 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.57 8.06 -51.93 -0.42 0.16 16 37 H 0.09 0.41 7.78 -51.93 -0.40 0.00 16 38 H 0.08 0.64 7.53 -51.93 -0.39 0.25 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.24 7.07 -51.93 -0.37 0.87 16 41 H 0.09 1.32 8.11 -51.93 -0.42 0.90 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.04 0.76 7.90 -51.93 -0.41 0.35 16 46 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 1.77 7.11 -51.93 -0.37 1.40 16 49 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 1.03 6.82 -51.93 -0.35 0.67 16 51 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 52 H 0.08 0.56 5.01 -51.93 -0.26 0.30 16 LS Contribution 400.91 15.07 6.04 6.04 Total: -1.00 -34.20 400.91 -11.66 -45.85 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -9.24 Total: -2.83 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -1.02 Total: 7.29 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -1.62 Total: -59.48 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.79 Total: -13.90 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.20 -11.66 -45.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941424718.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.655 kcal (2) G-P(sol) polarization free energy of solvation -34.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds