Wall clock time and date at job start Tue Mar 31 2020 19:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46684 * 2 1 4 4 H 1.08994 * 110.67515 * 307.96555 * 3 2 1 5 5 C 1.54992 * 110.61543 * 184.99609 * 3 2 1 6 6 C 1.54809 * 102.09468 * 204.47632 * 5 3 2 7 7 C 1.54106 * 104.18678 * 20.88100 * 6 5 3 8 8 H 1.08989 * 109.88043 * 242.45584 * 7 6 5 9 9 C 1.50699 * 109.87743 * 121.45061 * 7 6 5 10 10 O 1.21276 * 120.00539 * 245.30996 * 9 7 6 11 11 N 1.34780 * 119.99813 * 65.31026 * 9 7 6 12 12 C 1.47082 * 120.88308 * 179.97438 * 11 9 7 13 13 C 1.53247 * 108.52016 * 231.16276 * 12 11 9 14 14 N 1.46902 * 109.33984 * 306.17090 * 13 12 11 15 15 C 1.46902 * 110.99594 * 187.25433 * 14 13 12 16 16 C 1.53494 * 114.20143 * 179.97438 * 15 14 13 17 17 N 1.47070 * 87.98508 * 220.34514 * 16 15 14 18 18 C 1.36929 * 136.05777 * 207.08563 * 17 16 15 19 19 H 1.08004 * 120.00341 * 0.27862 * 18 17 16 20 20 C 1.38815 * 120.00031 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99958 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00489 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00506 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00336 * 22 20 18 26 26 C 1.47067 * 87.88333 * 27.34295 * 17 16 15 27 27 C 1.46894 * 111.27049 * 63.10468 * 14 13 12 28 28 C 1.47082 * 120.88172 * 359.97438 * 11 9 7 29 29 O 1.43747 * 107.41545 * 1.95874 * 7 6 5 30 30 H 1.09004 * 109.47541 * 60.00022 * 1 2 3 31 31 H 1.09004 * 109.47127 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47707 * 299.99913 * 1 2 3 33 33 H 1.08997 * 109.47305 * 240.00086 * 2 1 3 34 34 H 1.09002 * 109.47046 * 119.99808 * 2 1 3 35 35 H 1.08997 * 110.90828 * 86.27958 * 5 3 2 36 36 H 1.08997 * 110.94267 * 322.68725 * 5 3 2 37 37 H 1.08997 * 110.48847 * 262.21056 * 6 5 3 38 38 H 1.08995 * 110.49172 * 139.55862 * 6 5 3 39 39 H 1.09000 * 109.62869 * 111.45718 * 12 11 9 40 40 H 1.08997 * 109.78781 * 350.96415 * 12 11 9 41 41 H 1.08998 * 109.48910 * 186.20915 * 13 12 11 42 42 H 1.09002 * 109.48877 * 66.12825 * 13 12 11 43 43 H 1.08994 * 113.28013 * 313.06108 * 15 14 13 44 44 H 1.09004 * 113.46541 * 105.56441 * 16 15 14 45 45 H 1.09001 * 113.47090 * 335.12652 * 16 15 14 46 46 H 0.97000 * 120.00284 * 179.97438 * 21 20 18 47 47 H 1.08995 * 113.46483 * 87.43868 * 26 17 16 48 48 H 1.08999 * 113.46675 * 217.88048 * 26 17 16 49 49 H 1.09005 * 109.49239 * 56.85217 * 27 14 13 50 50 H 1.08999 * 109.49431 * 176.93559 * 27 14 13 51 51 H 1.09008 * 109.62781 * 248.54875 * 28 11 9 52 52 H 1.09006 * 109.63025 * 8.92668 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5766 2.0145 -0.8039 5 6 3.5843 1.4755 -0.1263 6 6 3.9331 2.8410 0.5142 7 6 2.7070 3.1731 1.3867 8 1 2.2331 4.0865 1.0277 9 6 3.1315 3.3463 2.8223 10 8 2.7442 2.5675 3.6674 11 7 3.9415 4.3669 3.1670 12 6 4.3674 4.5546 4.5623 13 6 4.0844 6.0055 4.9665 14 7 4.7143 6.9122 3.9975 15 6 4.6135 8.3090 4.4410 16 6 5.2507 9.3220 3.4798 17 7 5.7650 10.0375 4.6574 18 6 6.1110 11.3289 4.9530 19 1 6.0171 12.0988 4.2013 20 6 6.5765 11.6499 6.2208 21 7 6.6858 10.7128 7.1385 22 14 7.0478 13.4119 6.6243 23 1 5.8608 14.1342 7.1483 24 1 8.1216 13.4145 7.6500 25 1 7.5357 14.0877 5.3952 26 6 5.7503 8.7542 5.3756 27 6 4.1384 6.7427 2.6568 28 6 4.4232 5.3224 2.1579 29 8 1.7902 2.0713 1.2777 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8897 1.4472 -1.1723 36 1 4.0384 0.6568 0.4318 37 1 4.0699 3.5999 -0.2560 38 1 4.8281 2.7558 1.1305 39 1 5.4347 4.3517 4.6498 40 1 3.8116 3.8785 5.2119 41 1 4.4937 6.1928 5.9593 42 1 3.0079 6.1764 4.9782 43 1 3.6145 8.5821 4.7807 44 1 4.5214 9.8956 2.9077 45 1 6.0348 8.8940 2.8553 46 1 7.0114 10.9370 8.0242 47 1 6.6661 8.1765 5.2508 48 1 5.4467 8.8440 6.4186 49 1 3.0611 6.9034 2.7007 50 1 4.5868 7.4648 1.9744 51 1 5.4960 5.1933 2.0140 52 1 3.9041 5.1516 1.2147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941424718.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:15 Heat of formation + Delta-G solvation = -29.974971 kcal Electronic energy + Delta-G solvation = -30146.834196 eV Core-core repulsion = 26147.602265 eV Total energy + Delta-G solvation = -3999.231930 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.75810 -40.56046 -39.63514 -38.09975 -35.37147 -34.59285 -33.96120 -33.12222 -32.20586 -30.17790 -29.43459 -27.69234 -26.54406 -25.38632 -24.45252 -24.23108 -22.94641 -22.06238 -21.90188 -20.83286 -20.13534 -18.80369 -18.36515 -17.66976 -17.46001 -16.99814 -16.78099 -16.48835 -16.08045 -15.82986 -15.67570 -15.56424 -15.22165 -14.71866 -14.60058 -14.48034 -14.31161 -14.25684 -13.90083 -13.81821 -13.37282 -13.32292 -12.99203 -12.86627 -12.79647 -12.68197 -12.65697 -12.50516 -12.37749 -12.21895 -12.15843 -11.93579 -11.78527 -11.74545 -11.70061 -11.50234 -11.07667 -10.98259 -10.86553 -10.44852 -9.86654 -9.27056 -8.92906 -7.91020 -5.25160 1.46025 1.48193 1.48562 1.57039 1.72970 2.44983 2.82814 2.89426 3.30770 3.33672 3.52888 3.53150 3.66281 3.82527 3.84135 3.93692 4.03242 4.17560 4.18895 4.21999 4.24770 4.32074 4.34546 4.39880 4.40654 4.53791 4.59283 4.70899 4.73031 4.78637 4.81654 4.87696 4.88103 4.88703 4.93675 4.98024 5.03471 5.08685 5.10115 5.15611 5.22805 5.26995 5.36666 5.39353 5.42205 5.51099 5.89188 5.90764 6.11872 6.13479 6.36453 6.90005 7.07376 7.59493 8.60350 9.26766 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036815 B = 0.001985 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.370080 B =14099.054478 C =14416.635729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.065 3.935 4 H 0.092 0.908 5 C -0.146 4.146 6 C -0.142 4.142 7 C 0.061 3.939 8 H 0.115 0.885 9 C 0.509 3.491 10 O -0.579 6.579 11 N -0.607 5.607 12 C 0.125 3.875 13 C 0.050 3.950 14 N -0.524 5.524 15 C 0.053 3.947 16 C 0.136 3.864 17 N -0.644 5.644 18 C -0.227 4.227 19 H 0.089 0.911 20 C -0.070 4.070 21 N -0.954 5.954 22 Si 0.982 3.018 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.266 1.266 26 C 0.172 3.828 27 C 0.036 3.964 28 C 0.113 3.887 29 O -0.380 6.380 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.036 0.964 33 H 0.101 0.899 34 H 0.052 0.948 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.124 0.876 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.029 0.971 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.248 0.752 47 H 0.022 0.978 48 H 0.030 0.970 49 H 0.035 0.965 50 H 0.105 0.895 51 H 0.093 0.907 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.906 -19.564 -20.924 29.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C 0.009 3.991 4 H 0.110 0.890 5 C -0.183 4.183 6 C -0.180 4.180 7 C 0.000 4.000 8 H 0.132 0.868 9 C 0.297 3.703 10 O -0.458 6.458 11 N -0.341 5.341 12 C 0.002 3.998 13 C -0.079 4.079 14 N -0.250 5.250 15 C -0.056 4.056 16 C 0.011 3.989 17 N -0.371 5.371 18 C -0.355 4.355 19 H 0.107 0.893 20 C -0.263 4.263 21 N -0.603 5.603 22 Si 0.810 3.190 23 H -0.212 1.212 24 H -0.222 1.222 25 H -0.190 1.190 26 C 0.046 3.954 27 C -0.092 4.092 28 C -0.009 4.009 29 O -0.299 6.299 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.120 0.880 34 H 0.071 0.929 35 H 0.133 0.867 36 H 0.085 0.915 37 H 0.143 0.857 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.047 0.953 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.057 0.943 47 H 0.039 0.961 48 H 0.048 0.952 49 H 0.054 0.946 50 H 0.123 0.877 51 H 0.111 0.889 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.664 -19.882 -20.181 29.348 hybrid contribution -0.336 1.242 1.265 1.804 sum -8.000 -18.640 -18.916 27.736 Atomic orbital electron populations 1.21730 0.95415 1.01993 1.01657 1.21596 0.96671 0.94189 1.03058 1.23595 0.95459 0.94746 0.85342 0.89007 1.23199 0.94818 0.96841 1.03451 1.23066 0.95953 0.99627 0.99351 1.22747 0.92835 0.93158 0.91219 0.86765 1.21185 0.77514 0.80043 0.91510 1.90675 1.56616 1.45207 1.53297 1.48232 1.48121 1.28003 1.09739 1.21582 1.00865 0.95063 0.82318 1.22357 0.96607 0.92191 0.96774 1.62065 1.56400 1.03743 1.02790 1.23529 0.96800 0.86725 0.98556 1.22507 0.95465 0.90424 0.90521 1.45749 1.76791 1.03101 1.11423 1.19331 1.36159 0.83451 0.96600 0.89336 1.25701 1.02425 1.01964 0.96214 1.70034 1.53044 1.33250 1.03991 0.85025 0.77206 0.79048 0.77725 1.21224 1.22203 1.19015 1.21971 0.93823 0.84317 0.95336 1.22595 0.97843 0.98083 0.90656 1.22195 1.01867 0.85818 0.91005 1.89050 1.56708 1.45192 1.38939 0.91544 0.91958 0.94445 0.88047 0.92911 0.86735 0.91496 0.85744 0.90441 0.89907 0.90087 0.90134 0.95268 0.92347 0.92974 0.92617 0.94307 0.96057 0.95165 0.94647 0.87719 0.88882 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.86 71.98 0.71 -1.30 16 2 C -0.12 -1.51 5.69 30.59 0.17 -1.33 16 3 C 0.07 0.87 3.29 31.28 0.10 0.98 16 4 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 5 C -0.15 -1.42 6.59 31.89 0.21 -1.21 16 6 C -0.14 -1.44 5.11 31.59 0.16 -1.28 16 7 C 0.06 1.08 2.95 30.22 0.09 1.17 16 8 H 0.12 1.47 7.46 -2.39 -0.02 1.45 16 9 C 0.51 12.93 6.89 87.66 0.60 13.54 16 10 O -0.58 -20.63 15.98 15.69 0.25 -20.38 16 11 N -0.61 -13.31 3.01 -817.96 -2.46 -15.77 16 12 C 0.12 3.13 6.59 86.35 0.57 3.69 16 13 C 0.05 1.37 5.61 86.39 0.48 1.86 16 14 N -0.52 -14.87 4.61 -868.83 -4.01 -18.88 16 15 C 0.05 1.93 3.55 45.47 0.16 2.09 16 16 C 0.14 5.19 7.12 83.18 0.59 5.79 16 17 N -0.64 -33.09 3.78 -738.01 -2.79 -35.88 16 18 C -0.23 -12.75 10.75 84.04 0.90 -11.85 16 19 H 0.09 4.68 7.83 -2.91 -0.02 4.65 16 20 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 21 N -0.95 -58.47 11.50 21.65 0.25 -58.22 16 22 Si 0.98 45.72 29.55 68.60 2.03 47.74 16 23 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 26 C 0.17 8.24 7.23 83.27 0.60 8.85 16 27 C 0.04 0.74 5.46 86.37 0.47 1.22 16 28 C 0.11 1.72 5.75 86.34 0.50 2.22 16 29 O -0.38 -8.57 10.31 -130.27 -1.34 -9.92 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.04 0.68 8.06 -2.39 -0.02 0.66 16 33 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.07 0.84 8.06 -2.39 -0.02 0.82 16 37 H 0.12 0.40 7.78 -2.39 -0.02 0.38 16 38 H 0.08 0.93 7.53 -2.39 -0.02 0.92 16 39 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.08 2.25 7.07 -2.39 -0.02 2.23 16 41 H 0.08 2.41 8.11 -2.39 -0.02 2.39 16 42 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 2.23 8.13 -2.39 -0.02 2.21 16 44 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 45 H 0.06 1.99 7.90 -2.39 -0.02 1.97 16 46 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 47 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.03 1.65 7.11 -2.39 -0.02 1.64 16 49 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 50 H 0.10 1.91 6.82 -2.39 -0.02 1.89 16 51 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 52 H 0.12 1.00 5.01 -2.38 -0.01 0.99 16 Total: -1.00 -78.30 400.91 -0.39 -78.69 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.88 Total: 11.75 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 6.80 Total: 20.86 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -9.01 Total: -128.75 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -1.09 Total: -30.29 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -78.30 -0.39 -78.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941424718.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.719 kcal (2) G-P(sol) polarization free energy of solvation -78.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds