Wall clock time and date at job start Tue Mar 31 2020 20:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47328 * 2 1 4 4 H 1.09005 * 110.42995 * 52.03562 * 3 2 1 5 5 C 1.54812 * 110.60344 * 289.41068 * 3 2 1 6 6 C 1.54994 * 102.09153 * 220.38261 * 5 3 2 7 7 O 1.44578 * 103.58364 * 36.94721 * 6 5 3 8 8 C 1.43743 * 106.87195 * 320.11789 * 7 6 5 9 9 H 1.09004 * 109.87434 * 266.83298 * 8 7 6 10 10 C 1.50699 * 109.88109 * 145.83147 * 8 7 6 11 11 O 1.21275 * 119.99886 * 341.63437 * 10 8 7 12 12 N 1.34779 * 119.99721 * 161.63182 * 10 8 7 13 13 C 1.47081 * 120.87746 * 174.61024 * 12 10 8 14 14 C 1.53239 * 108.68105 * 231.10831 * 13 12 10 15 15 N 1.46952 * 109.31224 * 306.46948 * 14 13 12 16 16 C 1.46897 * 110.96923 * 187.06138 * 15 14 13 17 17 C 1.53950 * 113.74331 * 149.23536 * 16 15 14 18 18 N 1.47810 * 86.03774 * 222.08751 * 17 16 15 19 19 C 1.36936 * 134.45320 * 204.64571 * 18 17 16 20 20 H 1.08006 * 119.99816 * 179.86529 * 19 18 17 21 21 C 1.38806 * 120.00416 * 359.86507 * 19 18 17 22 22 N 1.31623 * 119.99526 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00128 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47274 * 89.99871 * 23 21 19 25 25 H 1.48504 * 109.46821 * 209.99903 * 23 21 19 26 26 H 1.48497 * 109.47061 * 329.99383 * 23 21 19 27 27 C 1.47583 * 91.05151 * 24.54710 * 18 17 16 28 28 C 1.46903 * 111.43978 * 62.81057 * 15 14 13 29 29 C 1.47075 * 120.88503 * 354.62951 * 12 10 8 30 30 H 1.09003 * 109.47278 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47103 * 299.99937 * 1 2 3 32 32 H 1.09005 * 109.46766 * 59.99764 * 1 2 3 33 33 H 1.09008 * 109.47525 * 240.00535 * 2 1 3 34 34 H 1.08998 * 109.47563 * 120.00454 * 2 1 3 35 35 H 1.08997 * 110.90522 * 338.58574 * 5 3 2 36 36 H 1.08998 * 110.90404 * 102.14873 * 5 3 2 37 37 H 1.09001 * 110.61637 * 155.51935 * 6 5 3 38 38 H 1.09001 * 110.62158 * 278.52275 * 6 5 3 39 39 H 1.09004 * 109.62859 * 350.91481 * 13 12 10 40 40 H 1.08990 * 109.63009 * 111.30058 * 13 12 10 41 41 H 1.09009 * 109.49381 * 66.23052 * 14 13 12 42 42 H 1.09003 * 109.49485 * 186.30513 * 14 13 12 43 43 H 1.09000 * 112.94698 * 280.83292 * 16 15 14 44 44 H 1.09004 * 113.76338 * 336.35240 * 17 16 15 45 45 H 1.09005 * 113.76698 * 107.74243 * 17 16 15 46 46 H 0.97004 * 119.99687 * 179.97438 * 22 21 19 47 47 H 1.09002 * 113.76775 * 221.15042 * 27 18 17 48 48 H 1.09001 * 113.87098 * 89.77391 * 27 18 17 49 49 H 1.09007 * 109.48796 * 177.02069 * 28 15 14 50 50 H 1.08998 * 109.49539 * 56.94618 * 28 15 14 51 51 H 1.08996 * 109.63017 * 248.50601 * 29 12 10 52 52 H 1.09000 * 109.62853 * 8.89229 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5744 2.0107 0.8053 5 6 1.7676 2.1167 -1.3667 6 6 3.0711 2.9231 -1.5965 7 8 4.1022 2.0608 -1.0640 8 6 3.5747 1.4719 0.1365 9 1 3.8586 2.0735 1.0000 10 6 4.1022 0.0691 0.2937 11 8 4.5711 -0.5130 -0.6613 12 7 4.0529 -0.5386 1.4958 13 6 4.4526 -1.9459 1.6471 14 6 3.3367 -2.6969 2.3812 15 7 3.0237 -1.9975 3.6352 16 6 2.0783 -2.7740 4.4483 17 6 2.2534 -2.5721 5.9645 18 7 2.0582 -4.0329 6.0778 19 6 1.6229 -4.8680 7.0720 20 1 1.5678 -5.9324 6.8975 21 6 1.2525 -4.3465 8.3039 22 7 1.3201 -3.0493 8.5166 23 14 0.6594 -5.4858 9.6602 24 1 1.8182 -5.9300 10.4756 25 1 -0.3072 -4.7635 10.5259 26 1 -0.0046 -6.6694 9.0574 27 6 2.5181 -4.2295 4.6893 28 6 2.5120 -0.6440 3.3819 29 6 3.5977 0.1879 2.6908 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6294 1.3696 -2.1483 36 1 0.9045 2.7798 -1.3081 37 1 3.2302 3.1005 -2.6602 38 1 3.0411 3.8654 -1.0494 39 1 4.6076 -2.3903 0.6639 40 1 5.3749 -2.0045 2.2248 41 1 2.4459 -2.7290 1.7537 42 1 3.6648 -3.7131 2.5998 43 1 1.0470 -2.6777 4.1090 44 1 3.2509 -2.2387 6.2509 45 1 1.4587 -1.9844 6.4241 46 1 1.0609 -2.6848 9.3773 47 1 1.9343 -4.9628 4.1329 48 1 3.5932 -4.3845 4.5985 49 1 2.2410 -0.1747 4.3277 50 1 1.6335 -0.7015 2.7392 51 1 4.4360 0.3342 3.3719 52 1 3.1906 1.1557 2.3981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941443397.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:32 Heat of formation + Delta-G solvation = -3.242694 kcal Electronic energy + Delta-G solvation = -31325.655300 eV Core-core repulsion = 27327.582568 eV Total energy + Delta-G solvation = -3998.072732 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.17874 -39.32918 -38.27112 -36.73729 -35.03545 -33.85328 -31.92094 -31.51366 -30.63652 -29.65736 -27.99141 -26.27459 -25.17388 -24.15598 -23.36102 -23.15065 -22.55585 -21.66573 -20.42957 -19.13868 -18.88584 -17.54344 -16.90888 -16.75268 -16.57358 -15.58309 -15.48240 -15.12839 -15.02260 -14.84290 -14.76076 -14.63618 -14.18040 -13.91612 -13.70939 -13.51548 -13.22961 -12.81358 -12.72339 -12.40125 -12.24561 -12.16893 -11.94447 -11.65378 -11.60118 -11.45357 -11.42536 -11.35650 -11.11739 -11.03697 -11.01476 -10.88019 -10.76329 -10.62718 -10.32344 -9.98424 -9.79115 -9.53744 -9.40250 -8.84089 -8.74228 -8.00631 -6.88058 -5.77756 -3.09650 2.42030 2.66300 3.38401 3.43154 3.45029 3.64788 3.98331 4.04864 4.19775 4.28046 4.47815 4.58408 4.78342 4.80121 4.85052 4.90681 4.97497 5.03782 5.10550 5.10665 5.18490 5.25626 5.26518 5.33952 5.35221 5.45225 5.47338 5.50489 5.52813 5.59489 5.69202 5.70404 5.76956 5.83858 5.85483 5.88795 5.90521 6.01092 6.11845 6.30549 6.32874 6.49260 6.59419 6.65781 7.03877 7.22914 7.26151 7.29340 7.53079 7.66288 7.97571 8.04934 9.04166 9.69956 10.59481 11.39534 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024013 B = 0.002518 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.760112 B =11117.916523 C =11463.480859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C -0.108 4.108 4 H 0.094 0.906 5 C -0.148 4.148 6 C 0.044 3.956 7 O -0.350 6.350 8 C 0.061 3.939 9 H 0.091 0.909 10 C 0.524 3.476 11 O -0.527 6.527 12 N -0.611 5.611 13 C 0.118 3.882 14 C 0.042 3.958 15 N -0.524 5.524 16 C 0.027 3.973 17 C 0.181 3.819 18 N -0.612 5.612 19 C -0.220 4.220 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.127 3.873 28 C 0.041 3.959 29 C 0.108 3.892 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.036 0.964 45 H 0.069 0.931 46 H 0.253 0.747 47 H 0.038 0.962 48 H 0.041 0.959 49 H 0.092 0.908 50 H 0.038 0.962 51 H 0.082 0.918 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.651 13.186 -18.616 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C -0.127 4.127 4 H 0.112 0.888 5 C -0.185 4.185 6 C -0.032 4.032 7 O -0.268 6.268 8 C -0.001 4.001 9 H 0.108 0.892 10 C 0.311 3.689 11 O -0.402 6.402 12 N -0.346 5.346 13 C -0.004 4.004 14 C -0.087 4.087 15 N -0.250 5.250 16 C -0.082 4.082 17 C 0.055 3.945 18 N -0.339 5.339 19 C -0.348 4.348 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.000 4.000 28 C -0.088 4.088 29 C -0.015 4.015 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.087 0.913 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.059 0.941 49 H 0.110 0.890 50 H 0.056 0.944 51 H 0.100 0.900 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.421 12.794 -18.644 22.656 hybrid contribution -1.196 -0.559 0.610 1.454 sum 0.225 12.235 -18.034 21.794 Atomic orbital electron populations 1.21731 0.94982 1.02026 1.01763 1.21958 0.96816 0.94786 1.03812 1.22535 0.92706 0.98417 0.99010 0.88802 1.23233 0.98510 0.99866 0.96915 1.23659 0.86343 0.93184 1.00046 1.89030 1.37364 1.61178 1.39179 1.22788 0.94026 0.92817 0.90430 0.89162 1.20223 0.78297 0.87808 0.82546 1.90693 1.44681 1.66109 1.38733 1.48171 1.65972 1.12899 1.07594 1.21740 0.97715 0.79729 1.01200 1.22477 0.97154 0.98585 0.90497 1.62179 1.44695 1.01784 1.16320 1.24326 0.92926 0.94750 0.96169 1.22253 0.99103 0.86493 0.86607 1.45811 1.74725 1.03724 1.09596 1.18990 1.35894 0.89271 0.90660 0.90299 1.24777 1.02027 0.96133 0.97530 1.69820 1.53512 1.10064 1.23403 0.86120 0.78174 0.79525 0.81947 1.21594 1.21640 1.20659 1.22606 0.97009 0.92888 0.87463 1.22470 0.95044 0.90810 1.00470 1.21976 0.98435 0.94633 0.86418 0.92505 0.92491 0.92746 0.91329 0.90040 0.90030 0.89756 0.88580 0.91798 0.89083 0.90563 0.94908 0.89069 0.92081 0.94611 0.91324 0.93671 0.94357 0.94132 0.88973 0.94429 0.89976 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.80 37.16 0.36 -0.85 16 2 C -0.14 -1.30 4.17 -26.73 -0.11 -1.41 16 3 C -0.11 -0.88 2.61 -89.09 -0.23 -1.11 16 4 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 5 C -0.15 -1.04 6.06 -24.72 -0.15 -1.19 16 6 C 0.04 0.34 7.72 38.21 0.29 0.64 16 7 O -0.35 -4.20 10.82 -54.07 -0.58 -4.79 16 8 C 0.06 0.63 2.91 -27.31 -0.08 0.55 16 9 H 0.09 0.76 6.66 -51.93 -0.35 0.41 16 10 C 0.52 6.82 4.94 -10.98 -0.05 6.77 16 11 O -0.53 -8.90 16.08 -13.28 -0.21 -9.12 16 12 N -0.61 -7.09 2.02 -172.47 -0.35 -7.44 16 13 C 0.12 1.44 6.57 -3.60 -0.02 1.41 16 14 C 0.04 0.53 5.43 -3.67 -0.02 0.51 16 15 N -0.52 -7.54 4.60 -228.18 -1.05 -8.59 16 16 C 0.03 0.48 3.43 -69.91 -0.24 0.24 16 17 C 0.18 4.14 7.32 -2.84 -0.02 4.12 16 18 N -0.61 -15.55 3.70 -177.85 -0.66 -16.21 16 19 C -0.22 -6.15 10.70 -15.06 -0.16 -6.32 16 20 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -26.95 11.39 55.49 0.63 -26.32 16 23 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.13 2.54 7.35 -2.97 -0.02 2.52 16 28 C 0.04 0.48 5.35 -3.70 -0.02 0.46 16 29 C 0.11 1.07 5.90 -3.61 -0.02 1.05 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.39 7.64 -51.93 -0.40 0.00 16 33 H 0.07 0.80 7.69 -51.92 -0.40 0.40 16 34 H 0.08 0.87 3.66 -51.93 -0.19 0.68 16 35 H 0.08 0.65 7.77 -51.93 -0.40 0.25 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 1.15 7.10 -51.93 -0.37 0.78 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.03 0.43 8.14 -51.92 -0.42 0.00 16 42 H 0.09 1.17 6.57 -51.93 -0.34 0.83 16 43 H 0.06 1.12 8.11 -51.93 -0.42 0.70 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.07 1.73 7.17 -51.93 -0.37 1.36 16 46 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.04 0.80 7.64 -51.93 -0.40 0.40 16 49 H 0.09 1.11 8.11 -51.92 -0.42 0.69 16 50 H 0.04 0.44 6.51 -51.93 -0.34 0.10 16 51 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 52 H 0.08 0.62 5.39 -51.93 -0.28 0.34 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -33.53 390.99 -10.82 -44.35 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -8.87 Total: -1.80 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -0.59 Total: 7.05 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -1.43 Total: -58.56 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.80 Total: -13.90 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.53 -10.82 -44.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941443397.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.112 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds