Wall clock time and date at job start Tue Mar 31 2020 20:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47328 * 2 1 4 4 H 1.09005 * 110.42995 * 52.03562 * 3 2 1 5 5 C 1.54812 * 110.60344 * 289.41068 * 3 2 1 6 6 C 1.54994 * 102.09153 * 220.38261 * 5 3 2 7 7 O 1.44578 * 103.58364 * 36.94721 * 6 5 3 8 8 C 1.43743 * 106.87195 * 320.11789 * 7 6 5 9 9 H 1.09004 * 109.87434 * 266.83298 * 8 7 6 10 10 C 1.50699 * 109.88109 * 145.83147 * 8 7 6 11 11 O 1.21275 * 119.99886 * 341.63437 * 10 8 7 12 12 N 1.34779 * 119.99721 * 161.63182 * 10 8 7 13 13 C 1.47081 * 120.87746 * 174.61024 * 12 10 8 14 14 C 1.53239 * 108.68105 * 231.10831 * 13 12 10 15 15 N 1.46952 * 109.31224 * 306.46948 * 14 13 12 16 16 C 1.46897 * 110.96923 * 187.06138 * 15 14 13 17 17 C 1.53950 * 113.74331 * 149.23536 * 16 15 14 18 18 N 1.47810 * 86.03774 * 222.08751 * 17 16 15 19 19 C 1.36936 * 134.45320 * 204.64571 * 18 17 16 20 20 H 1.08006 * 119.99816 * 179.86529 * 19 18 17 21 21 C 1.38806 * 120.00416 * 359.86507 * 19 18 17 22 22 N 1.31623 * 119.99526 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00128 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47274 * 89.99871 * 23 21 19 25 25 H 1.48504 * 109.46821 * 209.99903 * 23 21 19 26 26 H 1.48497 * 109.47061 * 329.99383 * 23 21 19 27 27 C 1.47583 * 91.05151 * 24.54710 * 18 17 16 28 28 C 1.46903 * 111.43978 * 62.81057 * 15 14 13 29 29 C 1.47075 * 120.88503 * 354.62951 * 12 10 8 30 30 H 1.09003 * 109.47278 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47103 * 299.99937 * 1 2 3 32 32 H 1.09005 * 109.46766 * 59.99764 * 1 2 3 33 33 H 1.09008 * 109.47525 * 240.00535 * 2 1 3 34 34 H 1.08998 * 109.47563 * 120.00454 * 2 1 3 35 35 H 1.08997 * 110.90522 * 338.58574 * 5 3 2 36 36 H 1.08998 * 110.90404 * 102.14873 * 5 3 2 37 37 H 1.09001 * 110.61637 * 155.51935 * 6 5 3 38 38 H 1.09001 * 110.62158 * 278.52275 * 6 5 3 39 39 H 1.09004 * 109.62859 * 350.91481 * 13 12 10 40 40 H 1.08990 * 109.63009 * 111.30058 * 13 12 10 41 41 H 1.09009 * 109.49381 * 66.23052 * 14 13 12 42 42 H 1.09003 * 109.49485 * 186.30513 * 14 13 12 43 43 H 1.09000 * 112.94698 * 280.83292 * 16 15 14 44 44 H 1.09004 * 113.76338 * 336.35240 * 17 16 15 45 45 H 1.09005 * 113.76698 * 107.74243 * 17 16 15 46 46 H 0.97004 * 119.99687 * 179.97438 * 22 21 19 47 47 H 1.09002 * 113.76775 * 221.15042 * 27 18 17 48 48 H 1.09001 * 113.87098 * 89.77391 * 27 18 17 49 49 H 1.09007 * 109.48796 * 177.02069 * 28 15 14 50 50 H 1.08998 * 109.49539 * 56.94618 * 28 15 14 51 51 H 1.08996 * 109.63017 * 248.50601 * 29 12 10 52 52 H 1.09000 * 109.62853 * 8.89229 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5744 2.0107 0.8053 5 6 1.7676 2.1167 -1.3667 6 6 3.0711 2.9231 -1.5965 7 8 4.1022 2.0608 -1.0640 8 6 3.5747 1.4719 0.1365 9 1 3.8586 2.0735 1.0000 10 6 4.1022 0.0691 0.2937 11 8 4.5711 -0.5130 -0.6613 12 7 4.0529 -0.5386 1.4958 13 6 4.4526 -1.9459 1.6471 14 6 3.3367 -2.6969 2.3812 15 7 3.0237 -1.9975 3.6352 16 6 2.0783 -2.7740 4.4483 17 6 2.2534 -2.5721 5.9645 18 7 2.0582 -4.0329 6.0778 19 6 1.6229 -4.8680 7.0720 20 1 1.5678 -5.9324 6.8975 21 6 1.2525 -4.3465 8.3039 22 7 1.3201 -3.0493 8.5166 23 14 0.6594 -5.4858 9.6602 24 1 1.8182 -5.9300 10.4756 25 1 -0.3072 -4.7635 10.5259 26 1 -0.0046 -6.6694 9.0574 27 6 2.5181 -4.2295 4.6893 28 6 2.5120 -0.6440 3.3819 29 6 3.5977 0.1879 2.6908 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6294 1.3696 -2.1483 36 1 0.9045 2.7798 -1.3081 37 1 3.2302 3.1005 -2.6602 38 1 3.0411 3.8654 -1.0494 39 1 4.6076 -2.3903 0.6639 40 1 5.3749 -2.0045 2.2248 41 1 2.4459 -2.7290 1.7537 42 1 3.6648 -3.7131 2.5998 43 1 1.0470 -2.6777 4.1090 44 1 3.2509 -2.2387 6.2509 45 1 1.4587 -1.9844 6.4241 46 1 1.0609 -2.6848 9.3773 47 1 1.9343 -4.9628 4.1329 48 1 3.5932 -4.3845 4.5985 49 1 2.2410 -0.1747 4.3277 50 1 1.6335 -0.7015 2.7392 51 1 4.4360 0.3342 3.3719 52 1 3.1906 1.1557 2.3981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941443397.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:31 Heat of formation + Delta-G solvation = -24.933176 kcal Electronic energy + Delta-G solvation = -31326.595870 eV Core-core repulsion = 27327.582568 eV Total energy + Delta-G solvation = -3999.013302 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.05595 -40.46877 -39.45127 -38.02897 -35.83062 -35.12036 -33.82371 -32.46800 -31.28403 -30.54230 -29.57516 -27.64894 -26.74560 -25.05579 -24.51286 -24.17738 -23.76091 -22.58329 -21.30060 -20.67016 -19.89989 -18.79245 -18.37851 -17.61077 -17.47164 -16.94064 -16.72571 -16.47496 -16.02478 -15.92092 -15.82812 -15.63017 -15.45378 -15.04550 -14.56593 -14.42586 -14.34082 -14.18671 -13.82681 -13.56786 -13.32858 -13.28102 -13.09355 -13.03237 -12.82450 -12.61340 -12.55171 -12.44778 -12.24120 -12.19688 -12.15842 -12.11351 -11.76661 -11.67670 -11.65814 -11.51679 -11.17035 -11.08947 -10.85261 -10.42095 -9.81809 -9.18317 -8.89771 -7.89178 -5.22308 1.46669 1.47132 1.48659 1.56948 1.75586 2.46567 2.85516 2.97196 3.28780 3.31141 3.44761 3.50713 3.63979 3.69109 3.89111 3.95460 4.03673 4.11599 4.23386 4.26414 4.27570 4.32989 4.35007 4.39071 4.45286 4.49662 4.55617 4.67226 4.69880 4.75082 4.79972 4.81980 4.86427 4.88556 4.93997 4.97410 4.97731 5.08192 5.10694 5.17252 5.22057 5.28931 5.36660 5.38188 5.43760 5.55522 5.79704 5.94089 6.12143 6.19437 6.36211 6.94281 7.07815 7.61899 8.58201 9.27789 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024013 B = 0.002518 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.760112 B =11117.916523 C =11463.480859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C -0.104 4.104 4 H 0.124 0.876 5 C -0.143 4.143 6 C 0.038 3.962 7 O -0.386 6.386 8 C 0.059 3.941 9 H 0.116 0.884 10 C 0.520 3.480 11 O -0.575 6.575 12 N -0.607 5.607 13 C 0.123 3.877 14 C 0.050 3.950 15 N -0.530 5.530 16 C 0.063 3.937 17 C 0.183 3.817 18 N -0.644 5.644 19 C -0.234 4.234 20 H 0.082 0.918 21 C -0.066 4.066 22 N -0.951 5.951 23 Si 0.978 3.022 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.269 1.269 27 C 0.129 3.871 28 C 0.041 3.959 29 C 0.113 3.887 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.034 0.966 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.021 0.979 45 H 0.039 0.961 46 H 0.249 0.751 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.091 0.909 50 H 0.046 0.954 51 H 0.085 0.915 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.202 14.495 -19.114 23.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C -0.123 4.123 4 H 0.142 0.858 5 C -0.180 4.180 6 C -0.037 4.037 7 O -0.305 6.305 8 C -0.001 4.001 9 H 0.133 0.867 10 C 0.310 3.690 11 O -0.454 6.454 12 N -0.342 5.342 13 C 0.000 4.000 14 C -0.079 4.079 15 N -0.255 5.255 16 C -0.046 4.046 17 C 0.057 3.943 18 N -0.371 5.371 19 C -0.363 4.363 20 H 0.099 0.901 21 C -0.259 4.259 22 N -0.600 5.600 23 Si 0.806 3.194 24 H -0.215 1.215 25 H -0.219 1.219 26 H -0.194 1.194 27 C 0.004 3.996 28 C -0.088 4.088 29 C -0.009 4.009 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.052 0.948 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.038 0.962 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.109 0.891 50 H 0.064 0.936 51 H 0.104 0.896 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.570 14.108 -19.163 23.803 hybrid contribution -0.879 -0.968 0.684 1.476 sum -0.308 13.139 -18.479 22.676 Atomic orbital electron populations 1.21704 0.93840 1.01721 1.02839 1.21866 0.97717 0.95544 1.01792 1.22617 0.91172 0.97757 1.00733 0.85807 1.23229 0.99306 0.99784 0.95729 1.23912 0.85551 0.93532 1.00723 1.88996 1.39376 1.62107 1.40006 1.22958 0.95218 0.91014 0.90959 0.86689 1.20844 0.77371 0.88849 0.81983 1.90665 1.46948 1.67486 1.40282 1.48230 1.65314 1.12660 1.07956 1.21624 0.97471 0.80318 1.00609 1.22415 0.97350 0.98532 0.89562 1.62050 1.43714 1.02714 1.17064 1.23680 0.93534 0.93627 0.93716 1.22084 0.97065 0.85144 0.89958 1.46218 1.75099 1.04733 1.11077 1.19373 1.35355 0.89948 0.91599 0.90058 1.25607 1.02860 0.97618 0.99811 1.70000 1.54793 1.11624 1.23543 0.85088 0.77446 0.77939 0.78908 1.21487 1.21880 1.19378 1.22730 0.97449 0.94583 0.84878 1.22550 0.96058 0.89293 1.00878 1.22089 0.98020 0.95307 0.85527 0.93583 0.91364 0.91639 0.94228 0.91191 0.91581 0.86936 0.88080 0.89400 0.89849 0.90397 0.94820 0.89086 0.92022 0.96151 0.94228 0.94217 0.93124 0.93289 0.89063 0.93596 0.89635 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.80 71.98 0.71 -1.35 16 2 C -0.13 -2.31 4.17 30.59 0.13 -2.18 16 3 C -0.10 -1.39 2.61 -9.80 -0.03 -1.41 16 4 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 5 C -0.14 -1.64 6.06 31.89 0.19 -1.44 16 6 C 0.04 0.50 7.72 72.66 0.56 1.06 16 7 O -0.39 -8.76 10.82 -130.96 -1.42 -10.18 16 8 C 0.06 1.10 2.91 30.22 0.09 1.19 16 9 H 0.12 1.51 6.66 -2.38 -0.02 1.50 16 10 C 0.52 13.12 4.94 87.66 0.43 13.56 16 11 O -0.57 -19.78 16.08 15.00 0.24 -19.54 16 12 N -0.61 -13.30 2.02 -817.97 -1.65 -14.95 16 13 C 0.12 2.89 6.57 86.35 0.57 3.46 16 14 C 0.05 1.22 5.43 86.37 0.47 1.69 16 15 N -0.53 -14.58 4.60 -875.81 -4.03 -18.61 16 16 C 0.06 2.23 3.43 46.67 0.16 2.39 16 17 C 0.18 8.49 7.32 86.44 0.63 9.13 16 18 N -0.64 -32.94 3.70 -716.60 -2.65 -35.60 16 19 C -0.23 -13.16 10.70 84.03 0.90 -12.26 16 20 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 21 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 22 N -0.95 -56.72 11.39 21.65 0.25 -56.48 16 23 Si 0.98 45.47 29.55 68.60 2.03 47.49 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 27 C 0.13 5.06 7.35 86.49 0.64 5.70 16 28 C 0.04 0.87 5.35 86.38 0.46 1.34 16 29 C 0.11 1.94 5.90 86.35 0.51 2.45 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.79 7.64 -2.38 -0.02 0.77 16 33 H 0.04 0.92 7.69 -2.38 -0.02 0.90 16 34 H 0.07 1.37 3.66 -2.39 -0.01 1.36 16 35 H 0.07 0.97 7.77 -2.39 -0.02 0.95 16 36 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 2.14 7.10 -2.39 -0.02 2.12 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.09 2.24 6.57 -2.39 -0.02 2.22 16 43 H 0.06 2.20 8.11 -2.39 -0.02 2.18 16 44 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.04 2.05 7.17 -2.38 -0.02 2.03 16 46 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 47 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.05 1.88 7.64 -2.39 -0.02 1.86 16 49 H 0.09 2.04 8.11 -2.38 -0.02 2.02 16 50 H 0.05 0.95 6.51 -2.39 -0.02 0.93 16 51 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.12 1.26 5.39 -2.39 -0.01 1.25 16 Total: -1.00 -74.91 390.99 0.54 -74.37 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.90 Total: 13.45 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 6.89 Total: 20.04 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -8.09 Total: -125.63 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -1.18 Total: -29.72 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -74.91 0.54 -74.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941443397.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.434 kcal (2) G-P(sol) polarization free energy of solvation -74.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds