Wall clock time and date at job start Tue Mar 31 2020 20:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47435 * 2 1 4 4 H 1.08997 * 110.27150 * 52.91328 * 3 2 1 5 5 O 1.43648 * 110.30932 * 290.71711 * 3 2 1 6 6 C 1.43239 * 109.96671 * 216.65543 * 5 3 2 7 7 C 1.54376 * 107.59033 * 1.71210 * 6 5 3 8 8 C 1.54938 * 110.30956 * 175.00093 * 3 2 1 9 9 H 1.09001 * 111.13067 * 37.39850 * 8 3 2 10 10 C 1.50702 * 111.12583 * 273.28239 * 8 3 2 11 11 O 1.21280 * 119.99869 * 359.97438 * 10 8 3 12 12 N 1.34784 * 120.00121 * 180.02562 * 10 8 3 13 13 C 1.47073 * 120.88298 * 179.97438 * 12 10 8 14 14 C 1.53233 * 108.52490 * 231.20940 * 13 12 10 15 15 N 1.46900 * 109.33757 * 306.16942 * 14 13 12 16 16 C 1.46906 * 110.99874 * 187.25267 * 15 14 13 17 17 C 1.53946 * 113.73987 * 273.73965 * 16 15 14 18 18 N 1.47811 * 86.03741 * 222.08432 * 17 16 15 19 19 C 1.36932 * 134.46158 * 204.64518 * 18 17 16 20 20 H 1.08000 * 120.00884 * 179.87059 * 19 18 17 21 21 C 1.38818 * 119.99703 * 359.86566 * 19 18 17 22 22 N 1.31617 * 119.99923 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99881 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47119 * 90.00535 * 23 21 19 25 25 H 1.48503 * 109.47064 * 210.00179 * 23 21 19 26 26 H 1.48500 * 109.47385 * 330.00342 * 23 21 19 27 27 C 1.47588 * 91.04902 * 24.55255 * 18 17 16 28 28 C 1.46900 * 111.27098 * 63.10651 * 15 14 13 29 29 C 1.47080 * 120.87947 * 0.02562 * 12 10 8 30 30 H 1.09000 * 109.47132 * 59.99878 * 1 2 3 31 31 H 1.08998 * 109.47432 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46904 * 299.99648 * 1 2 3 33 33 H 1.09000 * 109.46904 * 240.00352 * 2 1 3 34 34 H 1.08999 * 109.46746 * 120.00496 * 2 1 3 35 35 H 1.09000 * 109.82834 * 121.22259 * 6 5 3 36 36 H 1.08997 * 109.82823 * 242.19848 * 6 5 3 37 37 H 1.09001 * 110.84941 * 263.16711 * 7 6 5 38 38 H 1.08999 * 110.85031 * 139.54992 * 7 6 5 39 39 H 1.08999 * 109.63023 * 111.49204 * 13 12 10 40 40 H 1.09006 * 109.62942 * 350.91603 * 13 12 10 41 41 H 1.08997 * 109.49503 * 186.21428 * 14 13 12 42 42 H 1.09006 * 109.51766 * 66.14029 * 14 13 12 43 43 H 1.08993 * 112.94456 * 45.33593 * 16 15 14 44 44 H 1.08993 * 113.77386 * 336.35166 * 17 16 15 45 45 H 1.09001 * 113.76944 * 107.74868 * 17 16 15 46 46 H 0.97005 * 119.99879 * 179.97438 * 22 21 19 47 47 H 1.08999 * 113.76895 * 221.15146 * 27 18 17 48 48 H 1.09000 * 113.76895 * 89.75540 * 27 18 17 49 49 H 1.09008 * 109.49380 * 56.85095 * 28 15 14 50 50 H 1.08994 * 109.49500 * 176.93402 * 28 15 14 51 51 H 1.09003 * 109.62679 * 248.50115 * 29 12 10 52 52 H 1.09000 * 109.62945 * 9.08189 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5847 2.0041 0.8156 5 8 1.7570 2.0714 -1.2601 6 6 2.8321 2.9457 -1.6228 7 6 3.9116 2.8383 -0.5245 8 6 3.5841 1.4669 0.1266 9 1 4.0372 0.6479 -0.4320 10 6 4.0111 1.4358 1.5715 11 8 3.1759 1.3976 2.4500 12 7 5.3213 1.4515 1.8876 13 6 5.7597 1.4222 3.2911 14 6 6.7528 2.5676 3.5149 15 7 7.8337 2.4747 2.5245 16 6 8.8949 3.4494 2.8105 17 6 8.6404 4.8397 2.2003 18 7 10.0743 4.8316 1.8416 19 6 11.0077 5.8036 1.5984 20 1 12.0219 5.5284 1.3495 21 6 10.6501 7.1429 1.6717 22 7 9.4142 7.4785 1.9754 23 14 11.9235 8.4690 1.3407 24 1 11.9238 8.8049 -0.1058 25 1 11.5916 9.6820 2.1304 26 1 13.2672 7.9743 1.7343 27 6 10.0967 3.3559 1.8530 28 6 7.3204 2.6412 1.1582 29 6 6.3505 1.4993 0.8379 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.2493 2.6403 -2.5824 36 1 2.4692 3.9716 -1.6856 37 1 3.8094 3.6460 0.2002 38 1 4.9102 2.8318 -0.9614 39 1 6.2454 0.4698 3.5033 40 1 4.8983 1.5512 3.9466 41 1 7.1718 2.4948 4.5185 42 1 6.2386 3.5223 3.4037 43 1 9.1741 3.4769 3.8637 44 1 7.9721 4.8260 1.3394 45 1 8.3744 5.5999 2.9347 46 1 9.1645 8.4144 2.0270 47 1 10.9913 2.9337 2.3108 48 1 9.8572 2.9054 0.8898 49 1 6.7980 3.5946 1.0796 50 1 8.1510 2.6218 0.4527 51 1 6.8931 0.5543 0.8138 52 1 5.8797 1.6792 -0.1286 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941495733.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:29 Heat of formation + Delta-G solvation = -6.989497 kcal Electronic energy + Delta-G solvation = -30941.246152 eV Core-core repulsion = 26943.010947 eV Total energy + Delta-G solvation = -3998.235205 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.96289 -39.53579 -38.53383 -36.66759 -34.02628 -33.74395 -32.77627 -31.82771 -30.96728 -28.80777 -28.05252 -26.38553 -24.92287 -24.38457 -23.67736 -23.00733 -22.34227 -21.37765 -20.82268 -19.36705 -18.42289 -17.72539 -16.92253 -16.51962 -16.39907 -15.54120 -15.44400 -15.31057 -15.03549 -14.88913 -14.77529 -14.34943 -14.09185 -13.83999 -13.66899 -13.55366 -13.31721 -13.07965 -12.51685 -12.42085 -12.27710 -12.07807 -11.93164 -11.83706 -11.69675 -11.59987 -11.24684 -11.21070 -11.06775 -11.00082 -10.92246 -10.87662 -10.74878 -10.60529 -10.23235 -9.95190 -9.91475 -9.66911 -9.55818 -8.87251 -8.77337 -7.89622 -6.91709 -5.82278 -3.15081 2.41580 2.77724 3.34745 3.39779 3.41950 3.49830 4.01340 4.11271 4.29558 4.36985 4.44053 4.64205 4.80777 4.87831 4.91596 4.95952 4.97307 5.09420 5.13087 5.18785 5.22996 5.26824 5.33307 5.39530 5.44845 5.48904 5.56132 5.59342 5.60821 5.68263 5.71433 5.73473 5.79404 5.80533 5.92170 6.00313 6.02659 6.10045 6.12258 6.25273 6.35599 6.49132 6.57108 6.78279 6.92501 7.14322 7.24821 7.31445 7.46265 7.55631 7.92142 7.98740 8.98479 9.65203 10.53329 11.34375 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.002644 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.131558 B =10587.880628 C =11519.629123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.102 3.898 4 H 0.086 0.914 5 O -0.377 6.377 6 C 0.054 3.946 7 C -0.148 4.148 8 C -0.144 4.144 9 H 0.111 0.889 10 C 0.529 3.471 11 O -0.541 6.541 12 N -0.606 5.606 13 C 0.118 3.882 14 C 0.042 3.958 15 N -0.529 5.529 16 C 0.035 3.965 17 C 0.133 3.867 18 N -0.609 5.609 19 C -0.222 4.222 20 H 0.081 0.919 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.126 3.874 28 C 0.036 3.964 29 C 0.105 3.895 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.040 0.960 43 H 0.099 0.901 44 H 0.030 0.970 45 H 0.068 0.932 46 H 0.253 0.747 47 H 0.045 0.955 48 H 0.036 0.964 49 H 0.048 0.952 50 H 0.093 0.907 51 H 0.077 0.923 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.954 -15.494 -3.934 20.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C 0.044 3.956 4 H 0.104 0.896 5 O -0.297 6.297 6 C -0.023 4.023 7 C -0.186 4.186 8 C -0.165 4.165 9 H 0.129 0.871 10 C 0.317 3.683 11 O -0.419 6.419 12 N -0.340 5.340 13 C -0.005 4.005 14 C -0.087 4.087 15 N -0.253 5.253 16 C -0.074 4.074 17 C 0.006 3.994 18 N -0.336 5.336 19 C -0.350 4.350 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.000 4.000 28 C -0.092 4.092 29 C -0.018 4.018 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.117 0.883 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.066 0.934 50 H 0.111 0.889 51 H 0.095 0.905 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.249 -15.684 -3.560 20.838 hybrid contribution 0.778 1.782 -0.306 1.968 sum -12.471 -13.903 -3.866 19.072 Atomic orbital electron populations 1.21690 0.95078 1.01440 1.02281 1.21638 0.97092 0.94442 1.02479 1.22843 0.91162 0.94791 0.86811 0.89636 1.88420 1.42570 1.60562 1.38153 1.23098 0.86946 0.94809 0.97449 1.23244 1.00819 0.95914 0.98596 1.23039 0.98692 1.00313 0.94503 0.87056 1.20112 0.82024 0.75871 0.90335 1.90691 1.50921 1.50296 1.49951 1.48155 1.05276 1.72537 1.08000 1.21756 0.97879 0.99144 0.81698 1.22406 0.92218 0.97131 0.96914 1.62026 1.10430 1.51345 1.01492 1.24302 0.91723 0.91325 1.00057 1.22929 0.86770 0.93062 0.96599 1.45819 1.06442 0.99521 1.81823 1.19008 0.90107 0.85082 1.40758 0.90171 1.24792 0.96636 0.96902 1.02146 1.69821 1.16543 1.16271 1.54264 0.86120 0.80431 0.81501 0.77719 1.21610 1.21623 1.20556 1.22653 0.95111 0.86633 0.95591 1.22570 0.98023 0.96561 0.92095 1.22103 0.89103 1.00130 0.90454 0.92152 0.92843 0.92643 0.91448 0.90546 0.90871 0.90965 0.89741 0.88703 0.90782 0.88953 0.89599 0.94170 0.88254 0.95272 0.91330 0.93674 0.93632 0.94612 0.93374 0.88893 0.90491 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.85 37.16 0.37 -0.96 16 2 C -0.12 -1.13 5.66 -26.73 -0.15 -1.29 16 3 C 0.10 1.10 2.55 -25.71 -0.07 1.03 16 4 H 0.09 1.08 7.37 -51.93 -0.38 0.70 16 5 O -0.38 -4.22 10.81 -35.23 -0.38 -4.60 16 6 C 0.05 0.48 7.79 37.88 0.30 0.78 16 7 C -0.15 -1.35 5.76 -24.79 -0.14 -1.50 16 8 C -0.14 -1.41 1.85 -89.53 -0.17 -1.58 16 9 H 0.11 0.90 7.76 -51.93 -0.40 0.50 16 10 C 0.53 6.50 7.07 -10.98 -0.08 6.42 16 11 O -0.54 -8.28 15.17 5.56 0.08 -8.20 16 12 N -0.61 -7.01 3.01 -172.49 -0.52 -7.53 16 13 C 0.12 1.38 6.60 -3.61 -0.02 1.35 16 14 C 0.04 0.55 5.61 -3.70 -0.02 0.53 16 15 N -0.53 -7.57 4.76 -228.26 -1.09 -8.66 16 16 C 0.03 0.62 4.03 -69.91 -0.28 0.33 16 17 C 0.13 2.99 6.81 -2.84 -0.02 2.97 16 18 N -0.61 -15.17 3.70 -177.86 -0.66 -15.82 16 19 C -0.22 -6.11 10.70 -15.06 -0.16 -6.28 16 20 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -27.03 11.39 55.49 0.63 -26.39 16 23 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.13 2.47 8.42 -2.96 -0.02 2.44 16 28 C 0.04 0.48 4.47 -3.72 -0.02 0.46 16 29 C 0.11 1.07 6.26 -3.62 -0.02 1.05 16 30 H 0.06 0.56 7.99 -51.93 -0.42 0.15 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.89 8.03 -51.93 -0.42 0.48 16 38 H 0.09 0.74 6.42 -51.93 -0.33 0.40 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 1.14 7.06 -51.93 -0.37 0.77 16 41 H 0.09 1.04 8.04 -51.93 -0.42 0.62 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.10 1.78 8.04 -51.93 -0.42 1.37 16 44 H 0.03 0.67 5.65 -51.93 -0.29 0.38 16 45 H 0.07 1.76 7.16 -51.93 -0.37 1.39 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.04 0.67 6.22 -51.93 -0.32 0.34 16 49 H 0.05 0.73 6.45 -51.92 -0.33 0.39 16 50 H 0.09 1.29 6.06 -51.93 -0.31 0.97 16 51 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 52 H 0.09 0.72 4.13 -51.93 -0.21 0.51 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -32.03 392.59 -10.42 -42.45 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -8.78 Total: 0.52 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -0.61 Total: 5.46 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -1.63 Total: -58.40 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.30 Total: -12.80 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.03 -10.42 -42.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941495733.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.465 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds