Wall clock time and date at job start Tue Mar 31 2020 20:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47435 * 2 1 4 4 H 1.08997 * 110.27150 * 52.91328 * 3 2 1 5 5 O 1.43648 * 110.30932 * 290.71711 * 3 2 1 6 6 C 1.43239 * 109.96671 * 216.65543 * 5 3 2 7 7 C 1.54376 * 107.59033 * 1.71210 * 6 5 3 8 8 C 1.54938 * 110.30956 * 175.00093 * 3 2 1 9 9 H 1.09001 * 111.13067 * 37.39850 * 8 3 2 10 10 C 1.50702 * 111.12583 * 273.28239 * 8 3 2 11 11 O 1.21280 * 119.99869 * 359.97438 * 10 8 3 12 12 N 1.34784 * 120.00121 * 180.02562 * 10 8 3 13 13 C 1.47073 * 120.88298 * 179.97438 * 12 10 8 14 14 C 1.53233 * 108.52490 * 231.20940 * 13 12 10 15 15 N 1.46900 * 109.33757 * 306.16942 * 14 13 12 16 16 C 1.46906 * 110.99874 * 187.25267 * 15 14 13 17 17 C 1.53946 * 113.73987 * 273.73965 * 16 15 14 18 18 N 1.47811 * 86.03741 * 222.08432 * 17 16 15 19 19 C 1.36932 * 134.46158 * 204.64518 * 18 17 16 20 20 H 1.08000 * 120.00884 * 179.87059 * 19 18 17 21 21 C 1.38818 * 119.99703 * 359.86566 * 19 18 17 22 22 N 1.31617 * 119.99923 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99881 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47119 * 90.00535 * 23 21 19 25 25 H 1.48503 * 109.47064 * 210.00179 * 23 21 19 26 26 H 1.48500 * 109.47385 * 330.00342 * 23 21 19 27 27 C 1.47588 * 91.04902 * 24.55255 * 18 17 16 28 28 C 1.46900 * 111.27098 * 63.10651 * 15 14 13 29 29 C 1.47080 * 120.87947 * 0.02562 * 12 10 8 30 30 H 1.09000 * 109.47132 * 59.99878 * 1 2 3 31 31 H 1.08998 * 109.47432 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46904 * 299.99648 * 1 2 3 33 33 H 1.09000 * 109.46904 * 240.00352 * 2 1 3 34 34 H 1.08999 * 109.46746 * 120.00496 * 2 1 3 35 35 H 1.09000 * 109.82834 * 121.22259 * 6 5 3 36 36 H 1.08997 * 109.82823 * 242.19848 * 6 5 3 37 37 H 1.09001 * 110.84941 * 263.16711 * 7 6 5 38 38 H 1.08999 * 110.85031 * 139.54992 * 7 6 5 39 39 H 1.08999 * 109.63023 * 111.49204 * 13 12 10 40 40 H 1.09006 * 109.62942 * 350.91603 * 13 12 10 41 41 H 1.08997 * 109.49503 * 186.21428 * 14 13 12 42 42 H 1.09006 * 109.51766 * 66.14029 * 14 13 12 43 43 H 1.08993 * 112.94456 * 45.33593 * 16 15 14 44 44 H 1.08993 * 113.77386 * 336.35166 * 17 16 15 45 45 H 1.09001 * 113.76944 * 107.74868 * 17 16 15 46 46 H 0.97005 * 119.99879 * 179.97438 * 22 21 19 47 47 H 1.08999 * 113.76895 * 221.15146 * 27 18 17 48 48 H 1.09000 * 113.76895 * 89.75540 * 27 18 17 49 49 H 1.09008 * 109.49380 * 56.85095 * 28 15 14 50 50 H 1.08994 * 109.49500 * 176.93402 * 28 15 14 51 51 H 1.09003 * 109.62679 * 248.50115 * 29 12 10 52 52 H 1.09000 * 109.62945 * 9.08189 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5847 2.0041 0.8156 5 8 1.7570 2.0714 -1.2601 6 6 2.8321 2.9457 -1.6228 7 6 3.9116 2.8383 -0.5245 8 6 3.5841 1.4669 0.1266 9 1 4.0372 0.6479 -0.4320 10 6 4.0111 1.4358 1.5715 11 8 3.1759 1.3976 2.4500 12 7 5.3213 1.4515 1.8876 13 6 5.7597 1.4222 3.2911 14 6 6.7528 2.5676 3.5149 15 7 7.8337 2.4747 2.5245 16 6 8.8949 3.4494 2.8105 17 6 8.6404 4.8397 2.2003 18 7 10.0743 4.8316 1.8416 19 6 11.0077 5.8036 1.5984 20 1 12.0219 5.5284 1.3495 21 6 10.6501 7.1429 1.6717 22 7 9.4142 7.4785 1.9754 23 14 11.9235 8.4690 1.3407 24 1 11.9238 8.8049 -0.1058 25 1 11.5916 9.6820 2.1304 26 1 13.2672 7.9743 1.7343 27 6 10.0967 3.3559 1.8530 28 6 7.3204 2.6412 1.1582 29 6 6.3505 1.4993 0.8379 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.2493 2.6403 -2.5824 36 1 2.4692 3.9716 -1.6856 37 1 3.8094 3.6460 0.2002 38 1 4.9102 2.8318 -0.9614 39 1 6.2454 0.4698 3.5033 40 1 4.8983 1.5512 3.9466 41 1 7.1718 2.4948 4.5185 42 1 6.2386 3.5223 3.4037 43 1 9.1741 3.4769 3.8637 44 1 7.9721 4.8260 1.3394 45 1 8.3744 5.5999 2.9347 46 1 9.1645 8.4144 2.0270 47 1 10.9913 2.9337 2.3108 48 1 9.8572 2.9054 0.8898 49 1 6.7980 3.5946 1.0796 50 1 8.1510 2.6218 0.4527 51 1 6.8931 0.5543 0.8138 52 1 5.8797 1.6792 -0.1286 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941495733.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:28 Heat of formation + Delta-G solvation = -28.654098 kcal Electronic energy + Delta-G solvation = -30942.185600 eV Core-core repulsion = 26943.010947 eV Total energy + Delta-G solvation = -3999.174653 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.90650 -40.75768 -39.63991 -37.94319 -35.30654 -34.52093 -34.04447 -33.36289 -31.96272 -29.88559 -29.37560 -27.80444 -26.62501 -25.34088 -24.74740 -24.30811 -23.48778 -22.31712 -21.76482 -20.64590 -19.61603 -18.74549 -18.67622 -17.61427 -17.27270 -16.93090 -16.70424 -16.41231 -16.31412 -16.07999 -15.71463 -15.63579 -15.42620 -14.93784 -14.69005 -14.36940 -14.31373 -14.00428 -13.87081 -13.79174 -13.47813 -13.41181 -13.21409 -13.04604 -12.81234 -12.71779 -12.65856 -12.45668 -12.25884 -12.19036 -12.06915 -11.95158 -11.84415 -11.78287 -11.73894 -11.63784 -11.38767 -10.89277 -10.85273 -10.48863 -9.82524 -9.25707 -8.86654 -7.92207 -5.25906 1.43974 1.45401 1.46207 1.54303 1.85632 2.43862 2.70817 2.83558 3.28067 3.28989 3.47635 3.49988 3.55729 3.80691 3.84478 3.96943 4.02187 4.08699 4.11454 4.16802 4.20255 4.23974 4.35287 4.40283 4.46141 4.47570 4.51508 4.64463 4.68802 4.77232 4.78325 4.81611 4.84103 4.90122 4.94355 4.97522 4.99149 5.00598 5.08561 5.09850 5.21933 5.25159 5.36929 5.39179 5.41411 5.48746 5.89443 5.99893 6.04805 6.12309 6.33754 6.89271 7.03228 7.59144 8.54150 9.23801 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.002644 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.131558 B =10587.880628 C =11519.629123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.101 3.899 4 H 0.057 0.943 5 O -0.390 6.390 6 C 0.050 3.950 7 C -0.145 4.145 8 C -0.136 4.136 9 H 0.140 0.860 10 C 0.527 3.473 11 O -0.576 6.576 12 N -0.608 5.608 13 C 0.124 3.876 14 C 0.045 3.955 15 N -0.515 5.515 16 C 0.064 3.936 17 C 0.134 3.866 18 N -0.641 5.641 19 C -0.229 4.229 20 H 0.086 0.914 21 C -0.070 4.070 22 N -0.956 5.956 23 Si 0.978 3.022 24 H -0.286 1.286 25 H -0.297 1.297 26 H -0.266 1.266 27 C 0.131 3.869 28 C 0.036 3.964 29 C 0.113 3.887 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.016 0.984 43 H 0.100 0.900 44 H 0.024 0.976 45 H 0.026 0.974 46 H 0.246 0.754 47 H 0.057 0.943 48 H 0.056 0.944 49 H 0.024 0.976 50 H 0.092 0.908 51 H 0.099 0.901 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.971 -17.810 -5.289 22.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.043 3.957 4 H 0.075 0.925 5 O -0.310 6.310 6 C -0.026 4.026 7 C -0.182 4.182 8 C -0.157 4.157 9 H 0.158 0.842 10 C 0.316 3.684 11 O -0.456 6.456 12 N -0.340 5.340 13 C 0.001 3.999 14 C -0.084 4.084 15 N -0.238 5.238 16 C -0.046 4.046 17 C 0.007 3.993 18 N -0.368 5.368 19 C -0.358 4.358 20 H 0.104 0.896 21 C -0.263 4.263 22 N -0.605 5.605 23 Si 0.806 3.194 24 H -0.213 1.213 25 H -0.224 1.224 26 H -0.191 1.191 27 C 0.006 3.994 28 C -0.093 4.093 29 C -0.009 4.009 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.132 0.868 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.034 0.966 43 H 0.118 0.882 44 H 0.042 0.958 45 H 0.044 0.956 46 H 0.055 0.945 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.043 0.957 50 H 0.111 0.889 51 H 0.117 0.883 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.247 -18.048 -4.929 22.361 hybrid contribution 0.439 2.483 0.124 2.524 sum -11.808 -15.565 -4.805 20.119 Atomic orbital electron populations 1.21680 0.94938 1.02214 1.01554 1.21623 0.97278 0.93545 1.02897 1.22761 0.91812 0.95149 0.85978 0.92461 1.88408 1.43675 1.60948 1.38015 1.23249 0.86447 0.94700 0.98233 1.23229 1.01958 0.94844 0.98194 1.23042 0.98102 1.01522 0.93078 0.84233 1.20520 0.81824 0.75015 0.91073 1.90680 1.51866 1.51900 1.51194 1.48252 1.05463 1.71982 1.08285 1.21689 0.97132 0.99119 0.81961 1.22445 0.91975 0.96729 0.97267 1.62078 1.10273 1.48966 1.02499 1.23841 0.92197 0.89034 0.99483 1.22845 0.85892 0.94830 0.95736 1.46202 1.06965 1.01677 1.81957 1.19420 0.91047 0.86054 1.39269 0.89610 1.25631 0.98522 0.99151 1.02947 1.70026 1.18442 1.15954 1.56089 0.85085 0.78658 0.78381 0.77283 1.21302 1.22372 1.19067 1.22799 0.96143 0.83633 0.96815 1.22602 0.98485 0.96958 0.91225 1.22177 0.88227 0.99603 0.90901 0.92614 0.91311 0.93630 0.89954 0.90973 0.88598 0.91051 0.91868 0.86768 0.88863 0.89722 0.88374 0.96596 0.88175 0.95817 0.95572 0.94496 0.92458 0.92617 0.95747 0.88937 0.88317 0.87050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.85 71.98 0.71 -1.81 16 2 C -0.12 -2.06 5.66 30.60 0.17 -1.88 16 3 C 0.10 2.11 2.55 31.26 0.08 2.19 16 4 H 0.06 1.51 7.37 -2.39 -0.02 1.49 16 5 O -0.39 -8.31 10.81 -148.98 -1.61 -9.92 16 6 C 0.05 0.82 7.79 72.45 0.56 1.39 16 7 C -0.14 -2.43 5.76 31.85 0.18 -2.25 16 8 C -0.14 -2.42 1.85 -10.09 -0.02 -2.44 16 9 H 0.14 1.72 7.76 -2.39 -0.02 1.71 16 10 C 0.53 12.35 7.07 87.66 0.62 12.97 16 11 O -0.58 -17.70 15.17 -3.03 -0.05 -17.74 16 12 N -0.61 -12.87 3.01 -818.02 -2.46 -15.33 16 13 C 0.12 2.70 6.60 86.35 0.57 3.27 16 14 C 0.04 1.13 5.61 86.38 0.48 1.61 16 15 N -0.51 -13.86 4.76 -876.07 -4.17 -18.03 16 16 C 0.06 2.22 4.03 46.67 0.19 2.41 16 17 C 0.13 6.17 6.81 86.44 0.59 6.76 16 18 N -0.64 -31.93 3.70 -716.63 -2.65 -34.59 16 19 C -0.23 -12.66 10.70 84.04 0.90 -11.76 16 20 H 0.09 4.50 7.83 -2.91 -0.02 4.47 16 21 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 22 N -0.96 -57.82 11.39 21.65 0.25 -57.58 16 23 Si 0.98 45.43 29.55 68.60 2.03 47.45 16 24 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 25 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 C 0.13 4.89 8.42 86.48 0.73 5.62 16 28 C 0.04 0.88 4.47 86.37 0.39 1.27 16 29 C 0.11 1.94 6.26 86.34 0.54 2.48 16 30 H 0.05 1.00 7.99 -2.39 -0.02 0.98 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.34 8.03 -2.39 -0.02 1.32 16 38 H 0.11 1.45 6.42 -2.39 -0.02 1.44 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 2.03 7.06 -2.38 -0.02 2.01 16 41 H 0.10 2.25 8.04 -2.39 -0.02 2.23 16 42 H 0.02 0.48 8.14 -2.38 -0.02 0.46 16 43 H 0.10 3.51 8.04 -2.39 -0.02 3.49 16 44 H 0.02 1.13 5.65 -2.39 -0.01 1.11 16 45 H 0.03 1.41 7.16 -2.39 -0.02 1.39 16 46 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 47 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.06 1.90 6.22 -2.39 -0.01 1.89 16 49 H 0.02 0.73 6.45 -2.38 -0.02 0.72 16 50 H 0.09 2.33 6.06 -2.39 -0.01 2.31 16 51 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.11 1.41 4.13 -2.39 -0.01 1.40 16 Total: -1.00 -71.42 392.59 -0.60 -72.02 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.90 Total: 17.38 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 7.16 Total: 16.33 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -9.04 Total: -125.52 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -1.66 Total: -27.66 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -71.42 -0.60 -72.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941495733.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.369 kcal (2) G-P(sol) polarization free energy of solvation -71.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds