Wall clock time and date at job start Tue Mar 31 2020 19:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47401 * 2 1 4 4 C 1.50704 * 109.47036 * 239.99810 * 2 1 3 5 5 N 1.34779 * 119.99722 * 60.00078 * 4 2 1 6 6 O 1.21280 * 120.00302 * 240.00011 * 4 2 1 7 7 C 1.50700 * 109.47159 * 120.00424 * 2 1 3 8 8 O 1.21275 * 120.00469 * 125.79601 * 7 2 1 9 9 N 1.34776 * 119.99587 * 305.79529 * 7 2 1 10 10 C 1.46931 * 120.64432 * 354.77757 * 9 7 2 11 11 C 1.53188 * 108.78461 * 233.91085 * 10 9 7 12 12 C 1.53037 * 109.33208 * 305.37859 * 11 10 9 13 13 C 1.53041 * 109.43428 * 181.24503 * 12 11 10 14 14 C 1.53192 * 109.33497 * 58.68492 * 13 12 11 15 15 N 1.46928 * 108.76440 * 54.64421 * 14 13 12 16 16 C 1.36943 * 120.63920 * 126.34491 * 15 14 13 17 17 H 1.08002 * 119.99789 * 206.60068 * 16 15 14 18 18 C 1.38811 * 119.99828 * 26.58806 * 16 15 14 19 19 N 1.31611 * 120.00156 * 17.81898 * 18 16 15 20 20 Si 1.86806 * 119.99731 * 197.80998 * 18 16 15 21 21 H 1.48498 * 109.46644 * 84.99866 * 20 18 16 22 22 H 1.48501 * 109.47037 * 204.99333 * 20 18 16 23 23 H 1.48497 * 109.47115 * 324.99481 * 20 18 16 24 24 C 1.46923 * 118.72294 * 306.35515 * 15 14 13 25 25 C 1.53025 * 109.45548 * 301.30489 * 12 11 10 26 26 C 1.53039 * 109.54810 * 61.30431 * 12 11 10 27 27 C 1.46938 * 120.64250 * 175.05751 * 9 7 2 28 28 H 1.09003 * 109.46852 * 305.48108 * 1 2 3 29 29 H 1.08999 * 109.47237 * 65.47852 * 1 2 3 30 30 H 1.08999 * 109.47245 * 185.48298 * 1 2 3 31 31 H 1.09005 * 109.47400 * 196.46267 * 3 2 1 32 32 H 1.09004 * 109.47012 * 316.46566 * 3 2 1 33 33 H 1.08996 * 109.47102 * 76.46374 * 3 2 1 34 34 H 0.96996 * 120.00105 * 0.02562 * 5 4 2 35 35 H 0.96998 * 119.99589 * 179.97438 * 5 4 2 36 36 H 1.09005 * 109.58382 * 353.70001 * 10 9 7 37 37 H 1.09006 * 109.58604 * 114.12274 * 10 9 7 38 38 H 1.09000 * 109.49396 * 185.42097 * 11 10 9 39 39 H 1.09003 * 109.49392 * 65.33310 * 11 10 9 40 40 H 1.09001 * 109.49396 * 178.64658 * 13 12 11 41 41 H 1.08999 * 109.49549 * 298.72998 * 13 12 11 42 42 H 1.08995 * 109.58393 * 294.86023 * 14 13 12 43 43 H 1.08998 * 109.70373 * 174.49547 * 14 13 12 44 44 H 0.97005 * 120.00184 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.58711 * 293.84499 * 24 15 14 46 46 H 1.08998 * 109.70337 * 173.49222 * 24 15 14 47 47 H 1.08997 * 109.49783 * 61.26711 * 25 12 11 48 48 H 1.09000 * 109.49380 * 181.34991 * 25 12 11 49 49 H 1.09003 * 109.49335 * 178.72223 * 26 12 11 50 50 H 1.08997 * 109.49532 * 58.63403 * 26 12 11 51 51 H 1.08995 * 109.59008 * 245.86551 * 27 9 7 52 52 H 1.09001 * 109.58332 * 6.15104 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 1.7067 -0.2500 -2.4546 6 8 2.7296 -1.6965 -1.1192 7 6 2.0324 -0.7105 1.2304 8 8 2.8137 -1.6317 1.1223 9 7 1.6133 -0.3221 2.4511 10 6 0.7579 0.8623 2.6074 11 6 1.4094 1.8113 3.6183 12 6 1.6804 1.0554 4.9210 13 6 2.3028 2.0092 5.9432 14 6 1.3490 3.1826 6.1884 15 7 0.0367 2.6510 6.5807 16 6 -0.5709 3.0725 7.7333 17 1 -1.2707 2.4262 8.2423 18 6 -0.2873 4.3303 8.2474 19 7 0.2699 5.2440 7.4814 20 14 -0.6966 4.7261 10.0266 21 1 0.4141 4.2739 10.9023 22 1 -0.8810 6.1918 10.1778 23 1 -1.9483 4.0271 10.4138 24 6 -0.6111 1.6582 5.7127 25 6 0.3645 0.5019 5.4723 26 6 2.6459 -0.1009 4.6509 27 6 2.0080 -1.0713 3.6519 28 1 -0.3633 0.5965 0.8369 29 1 -0.3633 0.4265 -0.9350 30 1 -0.3634 -1.0229 0.0982 31 1 3.0904 1.4565 -0.2912 32 1 1.4588 2.0333 -0.7079 33 1 1.9344 1.8651 0.9991 34 1 1.1494 0.5389 -2.5436 35 1 2.0303 -0.7071 -3.2465 36 1 0.6537 1.3671 1.6470 37 1 -0.2237 0.5587 2.9714 38 1 0.7394 2.6480 3.8158 39 1 2.3494 2.1853 3.2125 40 1 2.4741 1.4779 6.8794 41 1 3.2511 2.3855 5.5593 42 1 1.2478 3.7683 5.2747 43 1 1.7406 3.8141 6.9858 44 1 0.4678 6.1231 7.8406 45 1 -0.8719 2.1201 4.7605 46 1 -1.5129 1.2811 6.1950 47 1 -0.0669 -0.1945 4.7532 48 1 0.5534 -0.0161 6.4126 49 1 2.8560 -0.6247 5.5834 50 1 3.5747 0.2903 4.2356 51 1 1.1281 -1.5319 4.1009 52 1 2.7268 -1.8444 3.3803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957563195.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:04 Heat of formation + Delta-G solvation = -37.552761 kcal Electronic energy + Delta-G solvation = -32037.297240 eV Core-core repulsion = 28037.736712 eV Total energy + Delta-G solvation = -3999.560528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.32656 -39.72524 -38.20629 -36.06707 -35.33366 -33.60929 -33.13747 -31.29983 -30.72469 -29.98730 -28.06306 -27.78053 -25.41099 -24.52824 -23.42437 -23.17502 -22.06778 -21.48881 -20.16087 -19.33889 -17.94765 -17.45656 -16.96695 -16.53377 -15.95316 -15.68725 -15.49080 -14.95193 -14.83865 -14.49139 -14.31656 -14.09626 -13.91724 -13.83639 -13.63702 -13.29977 -13.04637 -12.89985 -12.76602 -12.58408 -12.40278 -12.31078 -11.82993 -11.57812 -11.46839 -11.37971 -11.24558 -11.18520 -10.99886 -10.74685 -10.50198 -10.38294 -10.12195 -10.08760 -10.02471 -9.86427 -9.73435 -9.48498 -9.38579 -9.24770 -8.44840 -8.43597 -6.67500 -5.80005 -3.20462 2.44042 2.71281 2.80165 3.36819 3.38512 3.44063 3.44333 4.12038 4.36470 4.48683 4.58765 4.67280 4.82720 5.03997 5.07217 5.11402 5.18250 5.26888 5.30160 5.32194 5.36700 5.39992 5.43607 5.45739 5.63820 5.73192 5.76053 5.85598 5.88961 5.98143 6.02313 6.11118 6.15537 6.24147 6.31331 6.40720 6.55022 6.55563 6.61401 6.64639 6.72172 6.83731 6.90152 6.98916 7.06283 7.37818 7.45891 7.67601 7.78830 8.07186 8.28841 8.43828 9.20815 9.84963 10.40566 11.27999 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026386 B = 0.002822 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.903612 B = 9918.049504 C =10289.963833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.103 4.103 3 C -0.156 4.156 4 C 0.527 3.473 5 N -0.857 5.857 6 O -0.497 6.497 7 C 0.523 3.477 8 O -0.505 6.505 9 N -0.604 5.604 10 C 0.084 3.916 11 C -0.127 4.127 12 C -0.045 4.045 13 C -0.130 4.130 14 C 0.170 3.830 15 N -0.591 5.591 16 C -0.250 4.250 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.900 3.100 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.280 1.280 24 C 0.146 3.854 25 C -0.126 4.126 26 C -0.123 4.123 27 C 0.114 3.886 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.398 0.602 35 H 0.402 0.598 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.019 0.981 43 H 0.087 0.913 44 H 0.253 0.747 45 H 0.018 0.982 46 H 0.049 0.951 47 H 0.051 0.949 48 H 0.057 0.943 49 H 0.071 0.929 50 H 0.061 0.939 51 H 0.069 0.931 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.378 -6.840 -17.204 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.110 4.110 3 C -0.213 4.213 4 C 0.309 3.691 5 N -0.423 5.423 6 O -0.369 6.369 7 C 0.308 3.692 8 O -0.378 6.378 9 N -0.339 5.339 10 C -0.038 4.038 11 C -0.165 4.165 12 C -0.045 4.045 13 C -0.170 4.170 14 C 0.045 3.955 15 N -0.314 5.314 16 C -0.379 4.379 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.730 3.270 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.020 3.980 25 C -0.165 4.165 26 C -0.162 4.162 27 C -0.008 4.008 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.227 0.773 35 H 0.233 0.767 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.105 0.895 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.080 0.920 51 H 0.087 0.913 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.285 -7.831 -16.926 18.694 hybrid contribution -0.359 0.627 0.591 0.933 sum 0.927 -7.204 -16.335 17.877 Atomic orbital electron populations 1.22278 0.90608 1.04131 1.04356 1.20835 0.98814 0.97859 0.93457 1.22174 1.02307 0.91812 1.05001 1.19909 0.80309 0.84442 0.84467 1.43816 1.56697 1.34039 1.07769 1.90890 1.35326 1.24740 1.85928 1.19792 0.81551 0.84057 0.83760 1.90811 1.32736 1.28843 1.85380 1.48009 1.50984 1.29147 1.05724 1.22482 0.94177 0.86243 1.00871 1.22082 1.01304 0.98477 0.94661 1.20356 0.95191 0.94406 0.94567 1.22232 0.98543 0.98808 0.97375 1.20809 0.83896 0.91569 0.99266 1.44035 1.16833 1.47083 1.23424 1.19191 1.23083 0.96808 0.98853 0.91773 1.24969 1.01206 0.95091 0.98432 1.70021 1.47256 1.03605 1.33915 0.86338 0.78181 0.77054 0.85383 1.21484 1.21810 1.20572 1.20903 0.93784 0.89614 0.93715 1.22155 0.95951 0.98708 0.99698 1.22015 0.98703 0.96903 0.98533 1.21628 1.00155 0.94579 0.84468 0.89036 0.91066 0.91437 0.91392 0.90590 0.89197 0.77313 0.76741 0.88342 0.90748 0.89041 0.92200 0.92714 0.93551 0.96322 0.89520 0.93697 0.96461 0.93235 0.93026 0.92384 0.91063 0.92047 0.91308 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 7.95 37.16 0.30 -0.85 16 2 C -0.10 -1.04 0.59 -156.81 -0.09 -1.13 16 3 C -0.16 -1.23 7.89 37.15 0.29 -0.93 16 4 C 0.53 6.12 6.67 -10.98 -0.07 6.05 16 5 N -0.86 -5.58 8.64 31.22 0.27 -5.31 16 6 O -0.50 -8.58 15.04 -18.92 -0.28 -8.86 16 7 C 0.52 7.39 6.46 -10.99 -0.07 7.32 16 8 O -0.50 -9.46 13.62 -18.92 -0.26 -9.71 16 9 N -0.60 -7.59 2.96 -172.76 -0.51 -8.10 16 10 C 0.08 0.92 3.44 -3.71 -0.01 0.90 16 11 C -0.13 -1.70 3.94 -26.61 -0.10 -1.81 16 12 C -0.04 -0.67 0.51 -154.44 -0.08 -0.75 16 13 C -0.13 -2.33 4.90 -26.61 -0.13 -2.46 16 14 C 0.17 3.78 4.86 -3.71 -0.02 3.77 16 15 N -0.59 -13.86 3.00 -172.32 -0.52 -14.37 16 16 C -0.25 -6.61 9.60 -15.06 -0.14 -6.75 16 17 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 18 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 19 N -0.90 -25.33 11.13 55.49 0.62 -24.71 16 20 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.15 2.78 6.05 -3.71 -0.02 2.76 16 25 C -0.13 -1.97 4.14 -26.62 -0.11 -2.08 16 26 C -0.12 -1.66 4.90 -26.61 -0.13 -1.79 16 27 C 0.11 1.49 5.98 -3.70 -0.02 1.47 16 28 H 0.09 0.62 4.66 -51.93 -0.24 0.38 16 29 H 0.07 0.33 7.41 -51.93 -0.39 -0.06 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.60 8.03 -51.93 -0.42 0.18 16 32 H 0.08 0.36 7.99 -51.93 -0.41 -0.05 16 33 H 0.09 0.76 4.73 -51.93 -0.25 0.51 16 34 H 0.40 1.32 8.04 -40.82 -0.33 0.99 16 35 H 0.40 2.24 8.93 -40.82 -0.36 1.87 16 36 H 0.10 0.85 2.71 -51.93 -0.14 0.71 16 37 H 0.07 0.80 6.68 -51.93 -0.35 0.46 16 38 H 0.09 1.40 4.98 -51.93 -0.26 1.14 16 39 H 0.06 0.79 7.86 -51.93 -0.41 0.38 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.02 0.43 6.66 -51.93 -0.35 0.08 16 43 H 0.09 2.24 5.95 -51.93 -0.31 1.93 16 44 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.02 0.32 6.72 -51.93 -0.35 -0.03 16 46 H 0.05 0.95 7.93 -51.93 -0.41 0.54 16 47 H 0.05 0.70 4.98 -51.93 -0.26 0.44 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.07 0.85 6.66 -51.93 -0.35 0.51 16 52 H 0.09 1.23 7.00 -51.93 -0.36 0.87 16 LS Contribution 371.08 15.07 5.59 5.59 Total: -1.00 -34.71 371.08 -8.65 -43.36 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -8.02 Total: 2.23 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.51 Total: 3.65 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.14 Total: -52.50 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.54 Total: -18.57 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.71 -8.65 -43.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957563195.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.804 kcal (2) G-P(sol) polarization free energy of solvation -34.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds