Wall clock time and date at job start Tue Mar 31 2020 19:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46910 * 2 1 4 4 C 1.50695 * 109.47139 * 239.99747 * 2 1 3 5 5 N 1.34781 * 120.00142 * 60.00366 * 4 2 1 6 6 O 1.21284 * 120.00046 * 240.00020 * 4 2 1 7 7 C 1.50703 * 109.46984 * 119.99561 * 2 1 3 8 8 O 1.21279 * 119.99870 * 3.81381 * 7 2 1 9 9 N 1.34778 * 119.99949 * 183.80735 * 7 2 1 10 10 C 1.46924 * 120.63018 * 354.28965 * 9 7 2 11 11 C 1.52758 * 109.01099 * 233.58000 * 10 9 7 12 12 C 1.53044 * 109.38545 * 305.59438 * 11 10 9 13 13 C 1.53036 * 109.53772 * 61.23542 * 12 11 10 14 14 H 1.08995 * 109.49867 * 58.58925 * 13 12 11 15 15 C 1.53007 * 109.49614 * 178.68641 * 13 12 11 16 16 H 1.09001 * 110.88453 * 60.54097 * 15 13 12 17 17 C 1.55153 * 111.00080 * 296.65928 * 15 13 12 18 18 C 1.54375 * 102.91633 * 206.45375 * 17 15 13 19 19 N 1.47022 * 107.28993 * 22.13692 * 18 17 15 20 20 C 1.36937 * 125.64985 * 181.05767 * 19 18 17 21 21 H 1.07993 * 120.00407 * 180.02562 * 20 19 18 22 22 C 1.38811 * 119.99710 * 0.04213 * 20 19 18 23 23 N 1.31626 * 120.00199 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00022 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47335 * 60.00024 * 24 22 20 26 26 H 1.48504 * 109.47341 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46773 * 299.99991 * 24 22 20 28 28 C 1.47421 * 108.70237 * 1.09317 * 19 18 17 29 29 C 1.46928 * 120.62878 * 174.56701 * 9 7 2 30 30 H 1.08997 * 109.47117 * 304.93136 * 1 2 3 31 31 H 1.08994 * 109.46886 * 64.93066 * 1 2 3 32 32 H 1.08998 * 109.47070 * 184.93161 * 1 2 3 33 33 H 1.09006 * 109.47000 * 174.80805 * 3 2 1 34 34 H 1.08994 * 109.47483 * 294.80746 * 3 2 1 35 35 H 1.08998 * 109.47454 * 54.81361 * 3 2 1 36 36 H 0.97006 * 119.99524 * 359.97438 * 5 4 2 37 37 H 0.97001 * 120.00116 * 179.97438 * 5 4 2 38 38 H 1.08997 * 109.58680 * 353.41817 * 10 9 7 39 39 H 1.09000 * 109.58661 * 113.84054 * 10 9 7 40 40 H 1.08996 * 109.56673 * 185.55434 * 11 10 9 41 41 H 1.09011 * 109.35671 * 65.49819 * 11 10 9 42 42 H 1.09000 * 109.45636 * 301.21386 * 12 11 10 43 43 H 1.08993 * 109.44789 * 181.25341 * 12 11 10 44 44 H 1.08999 * 110.71923 * 324.78432 * 17 15 13 45 45 H 1.09000 * 110.72417 * 88.06333 * 17 15 13 46 46 H 1.09006 * 109.84622 * 262.72843 * 18 17 15 47 47 H 1.08994 * 110.03006 * 141.64956 * 18 17 15 48 48 H 0.97002 * 120.00014 * 179.97438 * 23 22 20 49 49 H 1.08999 * 110.36719 * 217.03340 * 28 19 18 50 50 H 1.09004 * 110.36737 * 94.71212 * 28 19 18 51 51 H 1.08993 * 109.58936 * 246.15518 * 29 9 7 52 52 H 1.08997 * 109.58537 * 6.44271 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7068 -0.2500 -2.4546 6 8 2.7296 -1.6965 -1.1191 7 6 2.0323 -0.7103 1.2305 8 8 1.2464 -1.2313 1.9933 9 7 3.3550 -0.7668 1.4833 10 6 4.3260 -0.2512 0.5087 11 6 5.3487 -1.3431 0.1998 12 6 5.9720 -1.8396 1.5064 13 6 4.8816 -2.4354 2.3997 14 1 4.3885 -3.2538 1.8753 15 6 5.5105 -2.9610 3.6917 16 1 6.0011 -2.1569 4.2402 17 6 6.5009 -4.1185 3.3972 18 6 6.4851 -4.9289 4.7110 19 7 5.2273 -4.6134 5.4039 20 6 4.8382 -5.1126 6.6182 21 1 3.8906 -4.8183 7.0445 22 6 5.6619 -5.9967 7.3014 23 7 6.8168 -6.3556 6.7818 24 14 5.1308 -6.6782 8.9575 25 1 3.8563 -7.4240 8.8003 26 1 6.1795 -7.5931 9.4757 27 1 4.9346 -5.5589 9.9135 28 6 4.4542 -3.6713 4.5745 29 6 3.8534 -1.3506 2.7362 30 1 -0.3633 0.5884 0.8425 31 1 -0.3633 0.4354 -0.9308 32 1 -0.3633 -1.0238 0.0883 33 1 3.1260 1.4439 0.0930 34 1 1.7546 1.9288 -0.9328 35 1 1.6028 1.9825 0.8399 36 1 1.1488 0.5385 -2.5435 37 1 2.0305 -0.7071 -3.2465 38 1 3.8085 0.0327 -0.4076 39 1 4.8370 0.6165 0.9260 40 1 6.1292 -0.9402 -0.4456 41 1 4.8512 -2.1720 -0.3039 42 1 6.4480 -1.0053 2.0217 43 1 6.7179 -2.6031 1.2856 44 1 6.1467 -4.7267 2.5649 45 1 7.4990 -3.7300 3.1950 46 1 7.3331 -4.6420 5.3330 47 1 6.5303 -5.9957 4.4922 48 1 7.3925 -6.9731 7.2594 49 1 3.9374 -2.9472 5.2044 50 1 3.7406 -4.2112 3.9520 51 1 4.3250 -0.5745 3.3388 52 1 3.0237 -1.7897 3.2901 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961191559.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:54 Heat of formation + Delta-G solvation = -76.712386 kcal Electronic energy + Delta-G solvation = -31444.685945 eV Core-core repulsion = 27443.427329 eV Total energy + Delta-G solvation = -4001.258617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.33516 -40.32425 -39.47475 -38.09044 -36.02289 -35.23340 -34.12623 -33.44503 -32.44870 -30.88214 -28.90121 -28.12769 -27.09941 -26.33662 -24.95991 -23.92344 -22.90033 -21.76121 -21.35751 -20.79645 -19.96161 -19.02189 -18.76144 -17.80930 -17.40711 -16.92344 -16.69652 -16.41368 -16.09096 -15.84449 -15.63395 -15.54897 -15.13224 -14.91336 -14.55945 -14.21023 -14.09563 -13.85155 -13.78128 -13.68012 -13.52372 -13.42100 -13.23882 -13.13064 -12.97788 -12.84483 -12.71485 -12.32372 -12.23988 -12.11340 -12.05150 -11.80661 -11.75731 -11.64899 -11.45773 -11.38098 -11.07551 -10.94811 -10.72592 -10.71569 -10.62769 -9.58938 -8.92434 -7.87051 -5.23182 1.40366 1.41876 1.46523 1.52790 1.52907 1.97006 2.47519 2.55946 3.23600 3.29747 3.59832 3.61919 3.77520 3.79437 3.84963 3.92761 3.95732 4.13858 4.15617 4.27171 4.31349 4.40119 4.53150 4.57720 4.63998 4.65528 4.70982 4.75348 4.77189 4.79936 4.83117 4.87441 4.91373 4.97551 5.06737 5.14414 5.16224 5.18341 5.22788 5.35489 5.41197 5.43702 5.54425 5.57183 5.66516 5.76052 5.90622 6.18026 6.36299 6.42555 7.08414 7.10315 7.29236 7.75400 8.41083 9.23254 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020990 B = 0.002720 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.665260 B =10293.169155 C =11038.094765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 C -0.152 4.152 4 C 0.527 3.473 5 N -0.823 5.823 6 O -0.567 6.567 7 C 0.524 3.476 8 O -0.586 6.586 9 N -0.594 5.594 10 C 0.106 3.894 11 C -0.128 4.128 12 C -0.108 4.108 13 C -0.072 4.072 14 H 0.045 0.955 15 C -0.074 4.074 16 H 0.085 0.915 17 C -0.119 4.119 18 C 0.184 3.816 19 N -0.629 5.629 20 C -0.249 4.249 21 H 0.077 0.923 22 C -0.067 4.067 23 N -0.951 5.951 24 Si 0.982 3.018 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.274 1.274 28 C 0.137 3.863 29 C 0.118 3.882 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.039 0.961 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.419 0.581 37 H 0.413 0.587 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.088 0.912 46 H 0.015 0.985 47 H 0.000 1.000 48 H 0.248 0.752 49 H 0.037 0.963 50 H 0.003 0.997 51 H 0.087 0.913 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.408 23.939 -24.508 35.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.107 4.107 3 C -0.209 4.209 4 C 0.311 3.689 5 N -0.389 5.389 6 O -0.446 6.446 7 C 0.312 3.688 8 O -0.466 6.466 9 N -0.324 5.324 10 C -0.015 4.015 11 C -0.166 4.166 12 C -0.145 4.145 13 C -0.092 4.092 14 H 0.063 0.937 15 C -0.094 4.094 16 H 0.104 0.896 17 C -0.157 4.157 18 C 0.059 3.941 19 N -0.355 5.355 20 C -0.378 4.378 21 H 0.095 0.905 22 C -0.260 4.260 23 N -0.600 5.600 24 Si 0.809 3.191 25 H -0.206 1.206 26 H -0.215 1.215 27 H -0.200 1.200 28 C 0.012 3.988 29 C -0.005 4.005 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.097 0.903 36 H 0.252 0.748 37 H 0.246 0.754 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.107 0.893 46 H 0.033 0.967 47 H 0.018 0.982 48 H 0.057 0.943 49 H 0.055 0.945 50 H 0.020 0.980 51 H 0.105 0.895 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.313 22.947 -23.715 33.800 hybrid contribution -0.440 -1.286 1.008 1.692 sum -7.753 21.661 -22.707 32.325 Atomic orbital electron populations 1.21715 0.89085 1.02664 1.04857 1.21134 1.00168 0.99159 0.90264 1.22286 1.03204 0.89347 1.06096 1.20100 0.79256 0.83755 0.85826 1.43562 1.54899 1.33956 1.06464 1.90865 1.39073 1.27461 1.87212 1.20649 0.82119 0.79092 0.86958 1.90687 1.56288 1.48212 1.51417 1.48003 1.05588 1.59281 1.19547 1.22124 0.90288 0.96799 0.92275 1.21796 0.98421 0.99029 0.97393 1.21548 0.96603 1.01121 0.95253 1.21264 0.96183 0.96809 0.94942 0.93691 1.22185 0.95511 0.96786 0.94937 0.89623 1.22736 0.99856 0.96489 0.96622 1.20936 0.87712 0.95153 0.90278 1.44835 1.19224 1.52117 1.19359 1.19436 1.02491 1.21234 0.94601 0.90501 1.25701 0.96976 1.00446 1.02843 1.70202 1.11987 1.38147 1.39681 0.85109 0.76907 0.77938 0.79115 1.20573 1.21544 1.19984 1.21708 0.93747 0.91065 0.92267 1.21583 0.97033 0.96076 0.85765 0.90761 0.87415 0.94126 0.90073 0.87103 0.90277 0.74814 0.75396 0.88586 0.88986 0.88489 0.92894 0.89988 0.91334 0.92300 0.89337 0.96705 0.98183 0.94300 0.94512 0.97960 0.89526 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 7.80 71.98 0.56 -1.22 16 2 C -0.10 -1.63 0.60 -53.68 -0.03 -1.66 16 3 C -0.15 -1.12 8.09 71.98 0.58 -0.53 16 4 C 0.53 8.46 5.06 87.65 0.44 8.91 16 5 N -0.82 -4.24 8.60 -173.53 -1.49 -5.73 16 6 O -0.57 -14.80 13.56 -3.04 -0.04 -14.84 16 7 C 0.52 14.64 5.92 87.66 0.52 15.16 16 8 O -0.59 -22.06 15.31 -3.03 -0.05 -22.11 16 9 N -0.59 -15.14 2.85 -819.74 -2.34 -17.48 16 10 C 0.11 1.87 3.61 86.22 0.31 2.18 16 11 C -0.13 -2.56 5.88 30.53 0.18 -2.38 16 12 C -0.11 -2.46 5.01 30.62 0.15 -2.30 16 13 C -0.07 -2.21 1.84 -10.71 -0.02 -2.23 16 14 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 15 C -0.07 -2.72 2.56 -9.40 -0.02 -2.74 16 16 H 0.09 2.96 8.14 -2.39 -0.02 2.95 16 17 C -0.12 -4.69 5.44 31.80 0.17 -4.52 16 18 C 0.18 9.88 5.38 86.75 0.47 10.35 16 19 N -0.63 -35.78 3.39 -691.90 -2.35 -38.12 16 20 C -0.25 -15.21 10.28 84.03 0.86 -14.35 16 21 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 22 C -0.07 -4.06 5.49 84.86 0.47 -3.60 16 23 N -0.95 -60.46 10.31 21.65 0.22 -60.24 16 24 Si 0.98 48.55 29.55 68.60 2.03 50.58 16 25 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 26 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 27 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 28 C 0.14 6.43 5.90 86.86 0.51 6.94 16 29 C 0.12 3.50 5.46 86.36 0.47 3.97 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.11 0.52 7.43 -2.39 -0.02 0.50 16 32 H 0.04 0.84 7.90 -2.39 -0.02 0.82 16 33 H 0.08 0.60 4.73 -2.38 -0.01 0.59 16 34 H 0.11 -0.05 7.42 -2.39 -0.02 -0.07 16 35 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.42 -0.88 7.55 -92.70 -0.70 -1.58 16 37 H 0.41 1.53 8.93 -92.71 -0.83 0.70 16 38 H 0.10 1.40 3.23 -2.39 -0.01 1.40 16 39 H 0.09 1.13 7.98 -2.39 -0.02 1.11 16 40 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.05 1.40 6.75 -2.38 -0.02 1.39 16 42 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 1.59 7.33 -2.39 -0.02 1.58 16 44 H 0.06 2.28 8.04 -2.39 -0.02 2.26 16 45 H 0.09 2.97 8.10 -2.39 -0.02 2.95 16 46 H 0.01 0.86 7.38 -2.38 -0.02 0.85 16 47 H 0.00 -0.01 7.50 -2.39 -0.02 -0.02 16 48 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 49 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.00 0.13 8.03 -2.39 -0.02 0.11 16 51 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 52 H 0.06 2.23 6.51 -2.39 -0.02 2.21 16 Total: -1.00 -88.68 385.25 1.02 -87.66 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -0.59 Total: 8.30 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 5.63 Total: 11.98 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -5.96 Total: -121.57 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.09 Total: -36.95 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Total: -88.68 1.02 -87.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961191559.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.952 kcal (2) G-P(sol) polarization free energy of solvation -88.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds