Wall clock time and date at job start Tue Mar 31 2020 19:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47160 * 2 1 4 4 C 1.50702 * 109.47253 * 239.99525 * 2 1 3 5 5 N 1.34776 * 119.99794 * 60.00498 * 4 2 1 6 6 O 1.21284 * 120.00051 * 240.00164 * 4 2 1 7 7 C 1.50699 * 109.46834 * 119.99646 * 2 1 3 8 8 O 1.21289 * 120.00040 * 3.60781 * 7 2 1 9 9 N 1.34782 * 120.00317 * 183.60451 * 7 2 1 10 10 C 1.46930 * 120.62475 * 354.59372 * 9 7 2 11 11 C 1.53167 * 108.76838 * 233.58710 * 10 9 7 12 12 C 1.53036 * 109.32813 * 305.36040 * 11 10 9 13 13 C 1.53042 * 109.52636 * 61.37069 * 12 11 10 14 14 H 1.08996 * 109.49655 * 58.62743 * 13 12 11 15 15 C 1.53001 * 109.49535 * 178.69258 * 13 12 11 16 16 H 1.08998 * 110.64854 * 61.68752 * 15 13 12 17 17 C 1.55154 * 110.71923 * 185.02491 * 15 13 12 18 18 C 1.54918 * 101.58267 * 153.86314 * 17 15 13 19 19 N 1.47426 * 104.83115 * 322.99063 * 18 17 15 20 20 C 1.36939 * 125.64731 * 204.16519 * 19 18 17 21 21 H 1.08007 * 119.99734 * 179.97438 * 20 19 18 22 22 C 1.38811 * 119.99958 * 359.95768 * 20 19 18 23 23 N 1.31619 * 119.99998 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99708 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47381 * 59.99947 * 24 22 20 26 26 H 1.48500 * 109.46917 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47208 * 299.99758 * 24 22 20 28 28 C 1.47025 * 108.70391 * 24.12746 * 19 18 17 29 29 C 1.46916 * 120.63447 * 174.57540 * 9 7 2 30 30 H 1.08998 * 109.47118 * 304.93520 * 1 2 3 31 31 H 1.09000 * 109.46747 * 64.93150 * 1 2 3 32 32 H 1.08993 * 109.47260 * 184.92957 * 1 2 3 33 33 H 1.09008 * 109.46770 * 174.79633 * 3 2 1 34 34 H 1.08995 * 109.47031 * 294.79431 * 3 2 1 35 35 H 1.08994 * 109.46888 * 54.79676 * 3 2 1 36 36 H 0.96999 * 120.00140 * 359.97438 * 5 4 2 37 37 H 0.96993 * 120.00102 * 180.02562 * 5 4 2 38 38 H 1.08997 * 109.58910 * 353.38250 * 10 9 7 39 39 H 1.09001 * 109.58258 * 113.80473 * 10 9 7 40 40 H 1.09000 * 109.47661 * 185.40788 * 11 10 9 41 41 H 1.08993 * 109.50035 * 65.32579 * 11 10 9 42 42 H 1.09002 * 109.46197 * 301.35878 * 12 11 10 43 43 H 1.08994 * 109.46298 * 181.38690 * 12 11 10 44 44 H 1.08998 * 111.00976 * 271.93841 * 17 15 13 45 45 H 1.09004 * 111.00891 * 35.79060 * 17 15 13 46 46 H 1.09003 * 110.36762 * 204.15458 * 18 17 15 47 47 H 1.08995 * 110.45840 * 81.87551 * 18 17 15 48 48 H 0.96999 * 119.99650 * 180.02562 * 23 22 20 49 49 H 1.08998 * 109.88504 * 239.52692 * 28 19 18 50 50 H 1.08997 * 110.00835 * 118.43064 * 28 19 18 51 51 H 1.09004 * 109.58873 * 6.62706 * 29 9 7 52 52 H 1.08996 * 109.59081 * 246.20234 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7069 -0.2501 -2.4545 6 8 2.7297 -1.6966 -1.1190 7 6 2.0323 -0.7103 1.2305 8 8 1.2460 -1.2281 1.9953 9 7 3.3552 -0.7704 1.4813 10 6 4.3259 -0.2527 0.5073 11 6 5.3456 -1.3523 0.1956 12 6 5.9698 -1.8491 1.5016 13 6 4.8792 -2.4417 2.3969 14 1 4.3840 -3.2598 1.8741 15 6 5.5087 -2.9676 3.6884 16 1 5.9832 -2.1576 4.2423 17 6 4.4481 -3.6877 4.5624 18 6 5.3287 -4.6717 5.3725 19 7 6.3691 -5.1138 4.4261 20 6 7.0735 -6.2855 4.5047 21 1 7.8182 -6.5190 3.7581 22 6 6.8307 -7.1730 5.5441 23 7 5.9230 -6.8886 6.4538 24 14 7.7921 -8.7709 5.6515 25 1 9.2416 -8.4697 5.7683 26 1 7.3476 -9.5368 6.8436 27 1 7.5510 -9.5770 4.4279 28 6 6.5244 -4.0889 3.3836 29 6 3.8540 -1.3543 2.7338 30 1 -0.3633 0.5885 0.8425 31 1 -0.3633 0.4354 -0.9309 32 1 -0.3633 -1.0238 0.0883 33 1 3.1261 1.4439 0.0932 34 1 1.7549 1.9287 -0.9329 35 1 1.6026 1.9825 0.8397 36 1 1.1490 0.5384 -2.5436 37 1 2.0299 -0.7075 -3.2465 38 1 3.8077 0.0353 -0.4073 39 1 4.8386 0.6128 0.9272 40 1 6.1259 -0.9515 -0.4513 41 1 4.8456 -2.1803 -0.3067 42 1 6.4484 -1.0155 2.0156 43 1 6.7136 -2.6145 1.2804 44 1 3.9415 -2.9831 5.2219 45 1 3.7305 -4.2252 3.9425 46 1 4.7359 -5.5223 5.7091 47 1 5.7815 -4.1648 6.2245 48 1 5.7536 -7.5086 7.1803 49 1 6.3165 -4.5212 2.4048 50 1 7.5374 -3.6870 3.4037 51 1 3.0245 -1.7934 3.2881 52 1 4.3282 -0.5787 3.3352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961191561.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:58 Heat of formation + Delta-G solvation = -47.422322 kcal Electronic energy + Delta-G solvation = -31453.013955 eV Core-core repulsion = 27453.025450 eV Total energy + Delta-G solvation = -3999.988504 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.49133 -39.26602 -38.19127 -36.62394 -35.25707 -33.88143 -33.13833 -32.17009 -30.97419 -28.87061 -27.91864 -27.09380 -25.82840 -24.70592 -23.98738 -22.65607 -21.92971 -20.26305 -19.86169 -19.30811 -19.07931 -18.14645 -17.11919 -16.74972 -16.51603 -15.88927 -15.42616 -15.20971 -14.91953 -14.60792 -14.19974 -14.10845 -13.97018 -13.75369 -13.47644 -13.12357 -12.96065 -12.82294 -12.73162 -12.64730 -12.34053 -12.29954 -11.98768 -11.72505 -11.55525 -11.45814 -11.06330 -10.91882 -10.81298 -10.75612 -10.72818 -10.42886 -10.24457 -10.07261 -10.04224 -9.93390 -9.79517 -9.65712 -9.58063 -9.28766 -8.55952 -8.52218 -6.70693 -5.54341 -2.95582 2.15256 2.37956 2.90573 3.18551 3.46958 3.50527 3.52315 4.01390 4.29323 4.37560 4.52272 4.57986 4.75197 4.93947 4.98838 5.01413 5.09559 5.14555 5.26906 5.28753 5.34424 5.37215 5.55090 5.56645 5.57636 5.68489 5.74414 5.81628 5.83669 5.89833 5.92145 6.08960 6.14199 6.20633 6.24117 6.38254 6.45393 6.49547 6.57065 6.65437 6.75851 6.80016 6.80816 6.92753 7.14064 7.38477 7.65465 7.74009 7.80890 7.98738 8.10447 8.48945 9.33454 9.94877 10.61200 11.49328 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022213 B = 0.002631 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.201882 B =10638.437259 C =10899.781111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.106 4.106 3 C -0.155 4.155 4 C 0.527 3.473 5 N -0.851 5.851 6 O -0.516 6.516 7 C 0.540 3.460 8 O -0.533 6.533 9 N -0.594 5.594 10 C 0.110 3.890 11 C -0.133 4.133 12 C -0.115 4.115 13 C -0.085 4.085 14 H 0.076 0.924 15 C -0.092 4.092 16 H 0.069 0.931 17 C -0.140 4.140 18 C 0.152 3.848 19 N -0.605 5.605 20 C -0.220 4.220 21 H 0.075 0.925 22 C -0.013 4.013 23 N -0.923 5.923 24 Si 0.914 3.086 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.286 1.286 28 C 0.145 3.855 29 C 0.119 3.881 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.401 0.599 37 H 0.405 0.595 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.104 0.896 47 H 0.010 0.990 48 H 0.251 0.749 49 H 0.022 0.978 50 H 0.017 0.983 51 H 0.095 0.905 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.354 22.857 -18.491 30.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.113 4.113 3 C -0.212 4.212 4 C 0.311 3.689 5 N -0.416 5.416 6 O -0.390 6.390 7 C 0.326 3.674 8 O -0.409 6.409 9 N -0.325 5.325 10 C -0.013 4.013 11 C -0.171 4.171 12 C -0.152 4.152 13 C -0.105 4.105 14 H 0.094 0.906 15 C -0.111 4.111 16 H 0.087 0.913 17 C -0.179 4.179 18 C 0.028 3.972 19 N -0.331 5.331 20 C -0.349 4.349 21 H 0.093 0.907 22 C -0.208 4.208 23 N -0.572 5.572 24 Si 0.744 3.256 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.019 3.981 29 C -0.003 4.003 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.230 0.770 37 H 0.236 0.764 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.122 0.878 47 H 0.028 0.972 48 H 0.062 0.938 49 H 0.040 0.960 50 H 0.035 0.965 51 H 0.113 0.887 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.301 21.755 -17.655 29.521 hybrid contribution 0.487 -0.527 -0.439 0.841 sum -8.814 21.227 -18.094 29.252 Atomic orbital electron populations 1.21673 0.89759 1.04331 1.02658 1.21130 0.99719 0.97683 0.92738 1.22217 1.03222 0.91965 1.03839 1.20077 0.79724 0.84396 0.84749 1.43796 1.56103 1.33900 1.07819 1.90875 1.36422 1.25293 1.86460 1.19643 0.82292 0.79546 0.85929 1.90715 1.54980 1.46071 1.49145 1.47881 1.04989 1.59788 1.19862 1.21938 0.90888 0.96391 0.92052 1.21907 0.97677 0.99396 0.98139 1.21600 0.97947 1.00618 0.95068 1.21477 0.95258 0.97354 0.96375 0.90570 1.22132 0.97115 0.97369 0.94532 0.91260 1.23063 0.97444 0.98742 0.98605 1.21902 0.89415 0.96143 0.89788 1.44518 1.43612 1.18247 1.26755 1.19040 1.14257 0.93637 1.07930 0.90688 1.24782 0.99611 0.99014 0.97441 1.69811 1.35471 1.36475 1.15423 0.86164 0.79198 0.83241 0.76973 1.21304 1.21614 1.21235 1.21267 0.95149 0.89029 0.92636 1.21736 0.98335 0.95640 0.84604 0.90524 0.91705 0.90879 0.90225 0.91004 0.90434 0.77032 0.76357 0.90186 0.91933 0.91544 0.89989 0.92198 0.91109 0.92581 0.92182 0.87837 0.97249 0.93794 0.96039 0.96513 0.88694 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 7.80 37.16 0.29 -0.68 16 2 C -0.11 -0.95 0.60 -156.81 -0.09 -1.04 16 3 C -0.16 -0.85 8.09 37.16 0.30 -0.55 16 4 C 0.53 4.85 5.06 -10.99 -0.06 4.79 16 5 N -0.85 -3.83 8.60 31.22 0.27 -3.56 16 6 O -0.52 -7.04 13.53 5.55 0.08 -6.96 16 7 C 0.54 7.41 5.92 -10.98 -0.07 7.35 16 8 O -0.53 -9.28 15.31 5.55 0.08 -9.20 16 9 N -0.59 -7.74 2.84 -172.79 -0.49 -8.23 16 10 C 0.11 1.14 3.64 -3.72 -0.01 1.13 16 11 C -0.13 -1.57 5.88 -26.63 -0.16 -1.72 16 12 C -0.11 -1.53 4.98 -26.69 -0.13 -1.66 16 13 C -0.09 -1.34 1.71 -90.50 -0.15 -1.49 16 14 H 0.08 1.40 8.13 -51.93 -0.42 0.98 16 15 C -0.09 -1.69 2.49 -88.78 -0.22 -1.91 16 16 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 17 C -0.14 -2.89 5.74 -24.58 -0.14 -3.03 16 18 C 0.15 3.94 5.89 -2.52 -0.01 3.93 16 19 N -0.61 -16.48 3.39 -170.06 -0.58 -17.05 16 20 C -0.22 -6.46 10.27 -15.06 -0.15 -6.61 16 21 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 22 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 23 N -0.92 -28.13 10.09 55.49 0.56 -27.57 16 24 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 C 0.15 3.22 5.84 -3.06 -0.02 3.20 16 29 C 0.12 1.72 5.47 -3.72 -0.02 1.70 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.27 7.43 -51.93 -0.39 -0.12 16 32 H 0.07 0.73 7.90 -51.93 -0.41 0.32 16 33 H 0.08 0.46 4.73 -51.92 -0.25 0.22 16 34 H 0.07 0.19 7.42 -51.93 -0.39 -0.20 16 35 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.40 0.58 7.55 -40.82 -0.31 0.27 16 37 H 0.40 1.50 8.93 -40.82 -0.36 1.14 16 38 H 0.08 0.73 3.23 -51.93 -0.17 0.56 16 39 H 0.06 0.53 7.98 -51.93 -0.41 0.12 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 1.18 6.74 -51.93 -0.35 0.83 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.01 7.11 -51.93 -0.37 0.64 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.06 1.29 8.04 -51.93 -0.42 0.87 16 46 H 0.10 3.01 5.87 -51.93 -0.30 2.71 16 47 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.02 0.48 7.56 -51.93 -0.39 0.09 16 50 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.09 1.58 6.51 -51.93 -0.34 1.24 16 52 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 384.04 15.07 5.79 5.79 Total: -1.00 -36.76 384.04 -8.69 -45.45 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -8.63 Total: 0.49 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.75 Total: 2.90 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.24 Total: -56.41 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.16 Total: -16.16 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.76 -8.69 -45.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961191561.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.971 kcal (2) G-P(sol) polarization free energy of solvation -36.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds