Wall clock time and date at job start Tue Mar 31 2020 19:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47160 * 2 1 4 4 C 1.50702 * 109.47253 * 239.99525 * 2 1 3 5 5 N 1.34776 * 119.99794 * 60.00498 * 4 2 1 6 6 O 1.21284 * 120.00051 * 240.00164 * 4 2 1 7 7 C 1.50699 * 109.46834 * 119.99646 * 2 1 3 8 8 O 1.21289 * 120.00040 * 3.60781 * 7 2 1 9 9 N 1.34782 * 120.00317 * 183.60451 * 7 2 1 10 10 C 1.46930 * 120.62475 * 354.59372 * 9 7 2 11 11 C 1.53167 * 108.76838 * 233.58710 * 10 9 7 12 12 C 1.53036 * 109.32813 * 305.36040 * 11 10 9 13 13 C 1.53042 * 109.52636 * 61.37069 * 12 11 10 14 14 H 1.08996 * 109.49655 * 58.62743 * 13 12 11 15 15 C 1.53001 * 109.49535 * 178.69258 * 13 12 11 16 16 H 1.08998 * 110.64854 * 61.68752 * 15 13 12 17 17 C 1.55154 * 110.71923 * 185.02491 * 15 13 12 18 18 C 1.54918 * 101.58267 * 153.86314 * 17 15 13 19 19 N 1.47426 * 104.83115 * 322.99063 * 18 17 15 20 20 C 1.36939 * 125.64731 * 204.16519 * 19 18 17 21 21 H 1.08007 * 119.99734 * 179.97438 * 20 19 18 22 22 C 1.38811 * 119.99958 * 359.95768 * 20 19 18 23 23 N 1.31619 * 119.99998 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99708 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47381 * 59.99947 * 24 22 20 26 26 H 1.48500 * 109.46917 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47208 * 299.99758 * 24 22 20 28 28 C 1.47025 * 108.70391 * 24.12746 * 19 18 17 29 29 C 1.46916 * 120.63447 * 174.57540 * 9 7 2 30 30 H 1.08998 * 109.47118 * 304.93520 * 1 2 3 31 31 H 1.09000 * 109.46747 * 64.93150 * 1 2 3 32 32 H 1.08993 * 109.47260 * 184.92957 * 1 2 3 33 33 H 1.09008 * 109.46770 * 174.79633 * 3 2 1 34 34 H 1.08995 * 109.47031 * 294.79431 * 3 2 1 35 35 H 1.08994 * 109.46888 * 54.79676 * 3 2 1 36 36 H 0.96999 * 120.00140 * 359.97438 * 5 4 2 37 37 H 0.96993 * 120.00102 * 180.02562 * 5 4 2 38 38 H 1.08997 * 109.58910 * 353.38250 * 10 9 7 39 39 H 1.09001 * 109.58258 * 113.80473 * 10 9 7 40 40 H 1.09000 * 109.47661 * 185.40788 * 11 10 9 41 41 H 1.08993 * 109.50035 * 65.32579 * 11 10 9 42 42 H 1.09002 * 109.46197 * 301.35878 * 12 11 10 43 43 H 1.08994 * 109.46298 * 181.38690 * 12 11 10 44 44 H 1.08998 * 111.00976 * 271.93841 * 17 15 13 45 45 H 1.09004 * 111.00891 * 35.79060 * 17 15 13 46 46 H 1.09003 * 110.36762 * 204.15458 * 18 17 15 47 47 H 1.08995 * 110.45840 * 81.87551 * 18 17 15 48 48 H 0.96999 * 119.99650 * 180.02562 * 23 22 20 49 49 H 1.08998 * 109.88504 * 239.52692 * 28 19 18 50 50 H 1.08997 * 110.00835 * 118.43064 * 28 19 18 51 51 H 1.09004 * 109.58873 * 6.62706 * 29 9 7 52 52 H 1.08996 * 109.59081 * 246.20234 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7069 -0.2501 -2.4545 6 8 2.7297 -1.6966 -1.1190 7 6 2.0323 -0.7103 1.2305 8 8 1.2460 -1.2281 1.9953 9 7 3.3552 -0.7704 1.4813 10 6 4.3259 -0.2527 0.5073 11 6 5.3456 -1.3523 0.1956 12 6 5.9698 -1.8491 1.5016 13 6 4.8792 -2.4417 2.3969 14 1 4.3840 -3.2598 1.8741 15 6 5.5087 -2.9676 3.6884 16 1 5.9832 -2.1576 4.2423 17 6 4.4481 -3.6877 4.5624 18 6 5.3287 -4.6717 5.3725 19 7 6.3691 -5.1138 4.4261 20 6 7.0735 -6.2855 4.5047 21 1 7.8182 -6.5190 3.7581 22 6 6.8307 -7.1730 5.5441 23 7 5.9230 -6.8886 6.4538 24 14 7.7921 -8.7709 5.6515 25 1 9.2416 -8.4697 5.7683 26 1 7.3476 -9.5368 6.8436 27 1 7.5510 -9.5770 4.4279 28 6 6.5244 -4.0889 3.3836 29 6 3.8540 -1.3543 2.7338 30 1 -0.3633 0.5885 0.8425 31 1 -0.3633 0.4354 -0.9309 32 1 -0.3633 -1.0238 0.0883 33 1 3.1261 1.4439 0.0932 34 1 1.7549 1.9287 -0.9329 35 1 1.6026 1.9825 0.8397 36 1 1.1490 0.5384 -2.5436 37 1 2.0299 -0.7075 -3.2465 38 1 3.8077 0.0353 -0.4073 39 1 4.8386 0.6128 0.9272 40 1 6.1259 -0.9515 -0.4513 41 1 4.8456 -2.1803 -0.3067 42 1 6.4484 -1.0155 2.0156 43 1 6.7136 -2.6145 1.2804 44 1 3.9415 -2.9831 5.2219 45 1 3.7305 -4.2252 3.9425 46 1 4.7359 -5.5223 5.7091 47 1 5.7815 -4.1648 6.2245 48 1 5.7536 -7.5086 7.1803 49 1 6.3165 -4.5212 2.4048 50 1 7.5374 -3.6870 3.4037 51 1 3.0245 -1.7934 3.2881 52 1 4.3282 -0.5787 3.3352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961191561.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:57 Heat of formation + Delta-G solvation = -74.922713 kcal Electronic energy + Delta-G solvation = -31454.206461 eV Core-core repulsion = 27453.025450 eV Total energy + Delta-G solvation = -4001.181011 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.33658 -40.34238 -39.48189 -38.06996 -36.02525 -35.23737 -34.13065 -33.45628 -32.50319 -30.70743 -29.06422 -28.16889 -26.85026 -26.48026 -24.93387 -23.89585 -22.95507 -21.85510 -21.32671 -20.71065 -19.94979 -19.00664 -18.80608 -17.81633 -17.41137 -17.04770 -16.70441 -16.39950 -16.12047 -15.82422 -15.66352 -15.47636 -15.08206 -14.90767 -14.53407 -14.32983 -14.16340 -13.78640 -13.74930 -13.57076 -13.43106 -13.39251 -13.20839 -13.14718 -12.97212 -12.86196 -12.69836 -12.46800 -12.32009 -12.10810 -12.01949 -11.87705 -11.77732 -11.65433 -11.39002 -11.36144 -11.04642 -10.93929 -10.76503 -10.70254 -10.63481 -9.59547 -8.90025 -7.78541 -5.23561 1.40000 1.42991 1.47637 1.52562 1.53996 1.97299 2.48331 2.55783 3.23393 3.29980 3.61191 3.68174 3.76802 3.77958 3.79899 3.91030 3.96439 4.10992 4.15947 4.24227 4.36626 4.38480 4.54028 4.55910 4.64612 4.67729 4.70810 4.74918 4.76127 4.80004 4.83267 4.86362 4.88374 4.97974 5.05916 5.14377 5.16121 5.18379 5.22758 5.34347 5.40164 5.45906 5.53055 5.56237 5.63973 5.80117 5.89727 6.29217 6.35930 6.42176 7.08934 7.09911 7.28909 7.77245 8.42401 9.23464 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022213 B = 0.002631 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.201882 B =10638.437259 C =10899.781111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 C -0.152 4.152 4 C 0.526 3.474 5 N -0.824 5.824 6 O -0.569 6.569 7 C 0.525 3.475 8 O -0.584 6.584 9 N -0.595 5.595 10 C 0.108 3.892 11 C -0.128 4.128 12 C -0.111 4.111 13 C -0.073 4.073 14 H 0.038 0.962 15 C -0.075 4.075 16 H 0.092 0.908 17 C -0.126 4.126 18 C 0.155 3.845 19 N -0.629 5.629 20 C -0.243 4.243 21 H 0.080 0.920 22 C -0.071 4.071 23 N -0.951 5.951 24 Si 0.984 3.016 25 H -0.275 1.275 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.143 3.857 29 C 0.121 3.879 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.420 0.580 37 H 0.413 0.587 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.049 0.951 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.043 0.957 46 H 0.066 0.934 47 H -0.009 1.009 48 H 0.247 0.753 49 H 0.014 0.986 50 H 0.026 0.974 51 H 0.066 0.934 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.702 26.207 -20.891 34.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.108 4.108 3 C -0.209 4.209 4 C 0.309 3.691 5 N -0.389 5.389 6 O -0.448 6.448 7 C 0.313 3.687 8 O -0.464 6.464 9 N -0.325 5.325 10 C -0.013 4.013 11 C -0.166 4.166 12 C -0.148 4.148 13 C -0.093 4.093 14 H 0.057 0.943 15 C -0.094 4.094 16 H 0.110 0.890 17 C -0.164 4.164 18 C 0.030 3.970 19 N -0.356 5.356 20 C -0.372 4.372 21 H 0.097 0.903 22 C -0.263 4.263 23 N -0.601 5.601 24 Si 0.812 3.188 25 H -0.201 1.201 26 H -0.217 1.217 27 H -0.204 1.204 28 C 0.018 3.982 29 C -0.001 4.001 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.252 0.748 37 H 0.245 0.755 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.062 0.938 46 H 0.084 0.916 47 H 0.009 0.991 48 H 0.057 0.943 49 H 0.032 0.968 50 H 0.044 0.956 51 H 0.085 0.915 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.650 25.178 -20.138 33.381 hybrid contribution 0.248 -1.582 0.258 1.622 sum -8.403 23.596 -19.880 31.978 Atomic orbital electron populations 1.21715 0.89008 1.02672 1.04898 1.21141 1.00219 0.99184 0.90206 1.22288 1.03182 0.89301 1.06147 1.20152 0.79248 0.83767 0.85898 1.43564 1.54924 1.33938 1.06485 1.90878 1.39101 1.27544 1.87228 1.20619 0.82088 0.79063 0.86945 1.90682 1.56216 1.48293 1.51257 1.48001 1.05576 1.59207 1.19712 1.22196 0.90197 0.96558 0.92375 1.21850 0.98484 0.98995 0.97265 1.21575 0.96694 1.00953 0.95603 1.21287 0.96178 0.96827 0.94987 0.94345 1.22049 0.95225 0.96499 0.95614 0.88996 1.22873 0.97003 0.98088 0.98455 1.21679 0.89451 0.95757 0.90081 1.44860 1.43783 1.18927 1.27985 1.19453 1.14660 0.94841 1.08200 0.90258 1.25710 1.00831 1.02527 0.97219 1.70083 1.36805 1.37401 1.15783 0.85070 0.78109 0.78800 0.76864 1.20053 1.21743 1.20423 1.21427 0.96720 0.89098 0.90971 1.21569 0.96972 0.95842 0.85750 0.90581 0.87493 0.94151 0.90112 0.87178 0.90080 0.74795 0.75460 0.88592 0.88707 0.88738 0.93179 0.89673 0.92386 0.90072 0.93785 0.91556 0.99064 0.94330 0.96751 0.95555 0.91539 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 7.80 71.98 0.56 -1.17 16 2 C -0.10 -1.61 0.60 -53.67 -0.03 -1.65 16 3 C -0.15 -1.06 8.09 71.98 0.58 -0.48 16 4 C 0.53 8.67 5.06 87.66 0.44 9.11 16 5 N -0.82 -4.65 8.60 -173.53 -1.49 -6.14 16 6 O -0.57 -15.37 13.53 -3.04 -0.04 -15.41 16 7 C 0.52 14.38 5.92 87.66 0.52 14.89 16 8 O -0.58 -21.36 15.31 -3.06 -0.05 -21.41 16 9 N -0.59 -14.96 2.84 -818.95 -2.33 -17.28 16 10 C 0.11 1.94 3.64 86.35 0.31 2.26 16 11 C -0.13 -2.77 5.88 30.66 0.18 -2.59 16 12 C -0.11 -2.77 4.98 30.62 0.15 -2.61 16 13 C -0.07 -2.30 1.71 -10.71 -0.02 -2.32 16 14 H 0.04 1.50 8.13 -2.39 -0.02 1.48 16 15 C -0.07 -2.73 2.49 -9.60 -0.02 -2.76 16 16 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 17 C -0.13 -5.36 5.74 31.99 0.18 -5.18 16 18 C 0.16 8.42 5.89 86.86 0.51 8.93 16 19 N -0.63 -35.40 3.39 -691.95 -2.35 -37.75 16 20 C -0.24 -14.61 10.27 84.03 0.86 -13.75 16 21 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 22 C -0.07 -4.26 5.49 84.86 0.47 -3.79 16 23 N -0.95 -60.20 10.09 21.65 0.22 -59.98 16 24 Si 0.98 48.12 29.55 68.60 2.03 50.15 16 25 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 26 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 27 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 28 C 0.14 6.43 5.84 86.73 0.51 6.93 16 29 C 0.12 3.45 5.47 86.36 0.47 3.92 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.11 0.49 7.43 -2.39 -0.02 0.48 16 32 H 0.04 0.82 7.90 -2.39 -0.02 0.81 16 33 H 0.08 0.58 4.73 -2.38 -0.01 0.57 16 34 H 0.11 -0.07 7.42 -2.39 -0.02 -0.08 16 35 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.42 -0.75 7.55 -92.71 -0.70 -1.45 16 37 H 0.41 1.82 8.93 -92.71 -0.83 0.99 16 38 H 0.10 1.44 3.23 -2.39 -0.01 1.44 16 39 H 0.09 1.15 7.98 -2.39 -0.02 1.13 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 41 H 0.05 1.44 6.74 -2.39 -0.02 1.42 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 1.60 7.11 -2.39 -0.02 1.58 16 44 H 0.08 3.03 8.14 -2.39 -0.02 3.02 16 45 H 0.04 2.00 8.04 -2.38 -0.02 1.98 16 46 H 0.07 4.10 5.87 -2.39 -0.01 4.08 16 47 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 48 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 49 H 0.01 0.67 7.56 -2.39 -0.02 0.65 16 50 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.07 2.29 6.51 -2.38 -0.02 2.27 16 52 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -87.43 384.04 1.08 -86.34 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -0.59 Total: 11.73 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 5.68 Total: 9.76 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -5.95 Total: -121.16 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -0.09 Total: -36.82 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Total: -87.43 1.08 -86.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961191561.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.420 kcal (2) G-P(sol) polarization free energy of solvation -87.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds