Wall clock time and date at job start Tue Mar 31 2020 19:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47595 * 2 1 4 4 C 1.50701 * 109.47052 * 239.99680 * 2 1 3 5 5 N 1.34776 * 120.00102 * 60.00423 * 4 2 1 6 6 O 1.21281 * 120.00308 * 240.00048 * 4 2 1 7 7 C 1.50707 * 109.47318 * 120.00199 * 2 1 3 8 8 O 1.21279 * 120.00373 * 121.95505 * 7 2 1 9 9 N 1.34772 * 119.99444 * 301.95232 * 7 2 1 10 10 C 1.46925 * 120.63322 * 354.93513 * 9 7 2 11 11 C 1.53193 * 108.77802 * 126.11492 * 10 9 7 12 12 C 1.53046 * 109.31187 * 54.63204 * 11 10 9 13 13 C 1.53036 * 109.53827 * 298.63667 * 12 11 10 14 14 H 1.09000 * 109.50010 * 301.41251 * 13 12 11 15 15 C 1.53006 * 109.49756 * 181.34535 * 13 12 11 16 16 H 1.09000 * 110.63945 * 300.70517 * 15 13 12 17 17 C 1.55148 * 110.72026 * 177.55639 * 15 13 12 18 18 C 1.54906 * 101.58381 * 206.13778 * 17 15 13 19 19 N 1.47429 * 104.83234 * 37.01104 * 18 17 15 20 20 C 1.36931 * 125.64991 * 155.90907 * 19 18 17 21 21 H 1.07993 * 120.00346 * 179.97438 * 20 19 18 22 22 C 1.38817 * 119.99767 * 359.97438 * 20 19 18 23 23 N 1.31617 * 120.00530 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99728 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47258 * 60.00124 * 24 22 20 26 26 H 1.48503 * 109.47016 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46947 * 299.99983 * 24 22 20 28 28 C 1.47324 * 108.73223 * 335.71576 * 19 18 17 29 29 C 1.46934 * 120.62753 * 174.65303 * 9 7 2 30 30 H 1.08998 * 109.47253 * 289.69930 * 1 2 3 31 31 H 1.09005 * 109.47220 * 49.69623 * 1 2 3 32 32 H 1.08998 * 109.47610 * 169.69949 * 1 2 3 33 33 H 1.08996 * 109.47141 * 190.02195 * 3 2 1 34 34 H 1.08999 * 109.46740 * 310.02354 * 3 2 1 35 35 H 1.08997 * 109.47059 * 70.01781 * 3 2 1 36 36 H 0.97006 * 119.99395 * 359.97438 * 5 4 2 37 37 H 0.96995 * 120.00439 * 180.02562 * 5 4 2 38 38 H 1.09004 * 109.58840 * 245.89930 * 10 9 7 39 39 H 1.08997 * 109.58928 * 6.32536 * 10 9 7 40 40 H 1.08993 * 109.49898 * 174.58214 * 11 10 9 41 41 H 1.08998 * 109.49678 * 294.65386 * 11 10 9 42 42 H 1.09006 * 109.45815 * 58.65840 * 12 11 10 43 43 H 1.08997 * 109.45734 * 178.62823 * 12 11 10 44 44 H 1.08997 * 111.00695 * 324.21656 * 17 15 13 45 45 H 1.09006 * 111.00230 * 88.02972 * 17 15 13 46 46 H 1.09004 * 110.37135 * 155.85147 * 18 17 15 47 47 H 1.09002 * 110.36702 * 278.17722 * 18 17 15 48 48 H 0.96999 * 120.00482 * 179.97438 * 23 22 20 49 49 H 1.08993 * 110.06320 * 241.87062 * 28 19 18 50 50 H 1.09001 * 109.84421 * 120.60838 * 28 19 18 51 51 H 1.08999 * 109.58666 * 353.67223 * 29 9 7 52 52 H 1.08997 * 109.58726 * 114.09728 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 -1.2304 5 7 1.7067 -0.2501 -2.4546 6 8 2.7295 -1.6966 -1.1192 7 6 2.0323 -0.7105 1.2305 8 8 2.7586 -1.6754 1.1196 9 7 1.6746 -0.2734 2.4541 10 6 0.8874 0.9575 2.6089 11 6 -0.3586 0.6445 3.4433 12 6 0.0660 -0.0004 4.7647 13 6 0.7998 -1.3131 4.4811 14 1 0.1460 -1.9818 3.9213 15 6 1.1944 -1.9736 5.8036 16 1 1.8404 -1.3151 6.3842 17 6 1.8871 -3.3385 5.5502 18 6 1.5777 -4.0935 6.8670 19 7 0.2124 -3.6729 7.2313 20 6 -0.6580 -4.3808 8.0164 21 1 -1.6405 -3.9847 8.2262 22 6 -0.2773 -5.6077 8.5427 23 7 0.9203 -6.0903 8.2876 24 14 -1.4645 -6.5730 9.6144 25 1 -2.6930 -6.8808 8.8391 26 1 -0.8219 -7.8396 10.0481 27 1 -1.8220 -5.7657 10.8084 28 6 -0.0593 -2.3628 6.6149 29 6 2.0590 -1.0222 3.6585 30 1 -0.3633 0.3464 0.9675 31 1 -0.3634 0.6648 -0.7838 32 1 -0.3634 -1.0111 -0.1837 33 1 3.1152 1.4476 -0.1788 34 1 1.5381 2.0053 -0.7870 35 1 1.8301 1.9021 0.9658 36 1 1.1488 0.5385 -2.5435 37 1 2.0297 -0.7075 -3.2465 38 1 1.4868 1.7132 3.1167 39 1 0.5872 1.3251 1.6276 40 1 -0.9015 1.5674 3.6468 41 1 -1.0018 -0.0422 2.8930 42 1 0.7289 0.6773 5.3029 43 1 -0.8172 -0.2019 5.3707 44 1 1.4448 -3.8483 4.6944 45 1 2.9614 -3.2123 5.4148 46 1 1.6119 -5.1707 6.7038 47 1 2.2840 -3.8043 7.6452 48 1 1.1863 -6.9474 8.6556 49 1 -0.2468 -1.6175 7.3878 50 1 -0.9214 -2.4374 5.9520 51 1 2.5318 -1.9609 3.3697 52 1 2.7540 -0.4280 4.2518 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961191562.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:01 Heat of formation + Delta-G solvation = -36.776843 kcal Electronic energy + Delta-G solvation = -31173.247884 eV Core-core repulsion = 27173.721002 eV Total energy + Delta-G solvation = -3999.526882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.34049 -39.40134 -37.97167 -36.68917 -35.53403 -33.68957 -33.02963 -32.25114 -30.97616 -28.87206 -27.97193 -27.21789 -26.04736 -24.51191 -24.15779 -22.80240 -21.90324 -20.37970 -19.91388 -19.34003 -19.12474 -17.68493 -17.02073 -16.76791 -16.12419 -15.86721 -15.62633 -15.16449 -14.88119 -14.67100 -14.44232 -14.14406 -14.08327 -13.80728 -13.71592 -13.30235 -13.26962 -12.77689 -12.63128 -12.54120 -12.37268 -12.27862 -11.93323 -11.69286 -11.61485 -11.50560 -11.27276 -11.01531 -10.89081 -10.77607 -10.72970 -10.52865 -10.18692 -10.07312 -9.94372 -9.90360 -9.79543 -9.64608 -9.38401 -9.26956 -8.61059 -8.56551 -6.74955 -5.57612 -2.99257 2.38929 2.63571 2.72685 3.29745 3.44260 3.47989 3.49912 4.00261 4.24605 4.48516 4.50439 4.54628 4.62818 4.74643 4.81117 4.95081 5.01593 5.12052 5.14909 5.16556 5.21123 5.21895 5.47658 5.51914 5.53815 5.58425 5.61661 5.65358 5.71767 5.79771 5.86686 5.97357 6.04415 6.07735 6.13688 6.34064 6.38402 6.49688 6.51776 6.55013 6.69401 6.75600 6.86699 7.01387 7.07085 7.34618 7.61856 7.69928 7.95373 8.03001 8.23204 8.45300 9.29708 9.90947 10.57098 11.45961 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.002570 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.015631 B =10893.772430 C =11431.766228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.103 4.103 3 C -0.156 4.156 4 C 0.524 3.476 5 N -0.858 5.858 6 O -0.493 6.493 7 C 0.521 3.479 8 O -0.492 6.492 9 N -0.610 5.610 10 C 0.083 3.917 11 C -0.138 4.138 12 C -0.116 4.116 13 C -0.087 4.087 14 H 0.074 0.926 15 C -0.092 4.092 16 H 0.070 0.930 17 C -0.140 4.140 18 C 0.153 3.847 19 N -0.606 5.606 20 C -0.222 4.222 21 H 0.075 0.925 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.913 3.087 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.286 1.286 28 C 0.145 3.855 29 C 0.120 3.880 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.397 0.603 37 H 0.402 0.598 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.104 0.896 47 H 0.010 0.990 48 H 0.252 0.748 49 H 0.018 0.982 50 H 0.021 0.979 51 H 0.095 0.905 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 22.155 -19.918 29.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.110 4.110 3 C -0.213 4.213 4 C 0.306 3.694 5 N -0.423 5.423 6 O -0.363 6.363 7 C 0.306 3.694 8 O -0.364 6.364 9 N -0.344 5.344 10 C -0.039 4.039 11 C -0.176 4.176 12 C -0.153 4.153 13 C -0.106 4.106 14 H 0.092 0.908 15 C -0.112 4.112 16 H 0.088 0.912 17 C -0.179 4.179 18 C 0.028 3.972 19 N -0.332 5.332 20 C -0.350 4.350 21 H 0.093 0.907 22 C -0.208 4.208 23 N -0.571 5.571 24 Si 0.744 3.256 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.213 1.213 28 C 0.019 3.981 29 C -0.002 4.002 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.233 0.767 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.122 0.878 47 H 0.028 0.972 48 H 0.063 0.937 49 H 0.035 0.965 50 H 0.039 0.961 51 H 0.113 0.887 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.467 20.745 -19.578 28.528 hybrid contribution -0.864 -0.115 0.276 0.914 sum -1.331 20.630 -19.302 28.283 Atomic orbital electron populations 1.22253 0.90620 1.03944 1.04664 1.20838 0.98797 0.97728 0.93671 1.22235 1.02528 0.91996 1.04527 1.19892 0.80493 0.84563 0.84439 1.43810 1.56711 1.34025 1.07800 1.90921 1.35121 1.24485 1.85814 1.19798 0.81365 0.84601 0.83632 1.90861 1.34250 1.26068 1.85217 1.48023 1.54780 1.25787 1.05847 1.22378 0.92981 0.86844 1.01693 1.21996 0.96973 1.01365 0.97275 1.21598 1.00900 0.96481 0.96342 1.21508 0.96268 0.96571 0.96265 0.90772 1.22127 0.98088 0.96809 0.94142 0.91199 1.23063 0.98442 0.95437 1.00964 1.21902 0.84709 1.01065 0.89546 1.44593 1.13341 1.17205 1.58041 1.19023 0.94926 0.99302 1.21785 0.90689 1.24791 0.96989 0.97937 1.01079 1.69805 1.18342 1.20034 1.48895 0.86169 0.79889 0.79347 0.80183 1.21225 1.21593 1.21291 1.21319 0.94304 0.88574 0.93887 1.21714 0.96676 0.97469 0.84346 0.89185 0.90842 0.91251 0.91354 0.90788 0.89459 0.77457 0.76664 0.91221 0.87975 0.90749 0.91358 0.91835 0.91004 0.92208 0.92492 0.87797 0.97248 0.93734 0.96453 0.96066 0.88661 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 7.92 37.15 0.29 -0.70 16 2 C -0.10 -0.93 0.59 -156.81 -0.09 -1.03 16 3 C -0.16 -0.86 7.93 37.16 0.29 -0.56 16 4 C 0.52 5.84 6.70 -10.99 -0.07 5.77 16 5 N -0.86 -5.05 8.68 31.22 0.27 -4.78 16 6 O -0.49 -8.52 15.02 -18.96 -0.28 -8.81 16 7 C 0.52 7.10 6.48 -10.98 -0.07 7.03 16 8 O -0.49 -9.40 13.62 -18.95 -0.26 -9.66 16 9 N -0.61 -7.00 2.97 -172.76 -0.51 -7.51 16 10 C 0.08 0.62 3.95 -3.71 -0.01 0.60 16 11 C -0.14 -1.10 5.74 -26.61 -0.15 -1.25 16 12 C -0.12 -1.26 5.01 -26.69 -0.13 -1.40 16 13 C -0.09 -1.20 1.71 -90.50 -0.16 -1.36 16 14 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 15 C -0.09 -1.60 2.49 -88.79 -0.22 -1.82 16 16 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 17 C -0.14 -2.82 5.61 -24.59 -0.14 -2.95 16 18 C 0.15 3.88 5.89 -2.53 -0.01 3.86 16 19 N -0.61 -16.05 3.40 -169.83 -0.58 -16.63 16 20 C -0.22 -6.37 10.28 -15.06 -0.15 -6.52 16 21 H 0.08 2.07 7.83 -52.49 -0.41 1.65 16 22 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 23 N -0.92 -27.79 10.09 55.49 0.56 -27.23 16 24 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 C 0.15 3.05 5.91 -2.90 -0.02 3.04 16 29 C 0.12 1.62 5.41 -3.70 -0.02 1.60 16 30 H 0.09 0.52 3.84 -51.93 -0.20 0.32 16 31 H 0.07 0.22 7.75 -51.93 -0.40 -0.18 16 32 H 0.07 0.57 8.10 -51.93 -0.42 0.14 16 33 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 34 H 0.07 0.18 7.74 -51.93 -0.40 -0.22 16 35 H 0.09 0.40 4.75 -51.93 -0.25 0.15 16 36 H 0.40 0.93 8.12 -40.82 -0.33 0.60 16 37 H 0.40 2.09 8.93 -40.82 -0.36 1.73 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.52 2.82 -51.93 -0.15 0.37 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.58 7.42 -51.93 -0.39 0.20 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.85 7.27 -51.93 -0.38 0.47 16 44 H 0.06 1.24 8.05 -51.93 -0.42 0.82 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.10 2.98 5.88 -51.93 -0.31 2.68 16 47 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 48 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.02 0.45 7.68 -51.93 -0.40 0.05 16 51 H 0.10 1.56 6.47 -51.93 -0.34 1.22 16 52 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 384.05 15.07 5.79 5.79 Total: -1.00 -38.38 384.05 -9.31 -47.69 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.50 Total: -0.30 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -0.77 Total: 3.85 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.26 Total: -56.15 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.54 Total: -18.47 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.38 -9.31 -47.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961191562.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.915 kcal (2) G-P(sol) polarization free energy of solvation -38.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds