Wall clock time and date at job start Tue Mar 31 2020 19:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47595 * 2 1 4 4 C 1.50701 * 109.47052 * 239.99680 * 2 1 3 5 5 N 1.34776 * 120.00102 * 60.00423 * 4 2 1 6 6 O 1.21281 * 120.00308 * 240.00048 * 4 2 1 7 7 C 1.50707 * 109.47318 * 120.00199 * 2 1 3 8 8 O 1.21279 * 120.00373 * 121.95505 * 7 2 1 9 9 N 1.34772 * 119.99444 * 301.95232 * 7 2 1 10 10 C 1.46925 * 120.63322 * 354.93513 * 9 7 2 11 11 C 1.53193 * 108.77802 * 126.11492 * 10 9 7 12 12 C 1.53046 * 109.31187 * 54.63204 * 11 10 9 13 13 C 1.53036 * 109.53827 * 298.63667 * 12 11 10 14 14 H 1.09000 * 109.50010 * 301.41251 * 13 12 11 15 15 C 1.53006 * 109.49756 * 181.34535 * 13 12 11 16 16 H 1.09000 * 110.63945 * 300.70517 * 15 13 12 17 17 C 1.55148 * 110.72026 * 177.55639 * 15 13 12 18 18 C 1.54906 * 101.58381 * 206.13778 * 17 15 13 19 19 N 1.47429 * 104.83234 * 37.01104 * 18 17 15 20 20 C 1.36931 * 125.64991 * 155.90907 * 19 18 17 21 21 H 1.07993 * 120.00346 * 179.97438 * 20 19 18 22 22 C 1.38817 * 119.99767 * 359.97438 * 20 19 18 23 23 N 1.31617 * 120.00530 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99728 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47258 * 60.00124 * 24 22 20 26 26 H 1.48503 * 109.47016 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46947 * 299.99983 * 24 22 20 28 28 C 1.47324 * 108.73223 * 335.71576 * 19 18 17 29 29 C 1.46934 * 120.62753 * 174.65303 * 9 7 2 30 30 H 1.08998 * 109.47253 * 289.69930 * 1 2 3 31 31 H 1.09005 * 109.47220 * 49.69623 * 1 2 3 32 32 H 1.08998 * 109.47610 * 169.69949 * 1 2 3 33 33 H 1.08996 * 109.47141 * 190.02195 * 3 2 1 34 34 H 1.08999 * 109.46740 * 310.02354 * 3 2 1 35 35 H 1.08997 * 109.47059 * 70.01781 * 3 2 1 36 36 H 0.97006 * 119.99395 * 359.97438 * 5 4 2 37 37 H 0.96995 * 120.00439 * 180.02562 * 5 4 2 38 38 H 1.09004 * 109.58840 * 245.89930 * 10 9 7 39 39 H 1.08997 * 109.58928 * 6.32536 * 10 9 7 40 40 H 1.08993 * 109.49898 * 174.58214 * 11 10 9 41 41 H 1.08998 * 109.49678 * 294.65386 * 11 10 9 42 42 H 1.09006 * 109.45815 * 58.65840 * 12 11 10 43 43 H 1.08997 * 109.45734 * 178.62823 * 12 11 10 44 44 H 1.08997 * 111.00695 * 324.21656 * 17 15 13 45 45 H 1.09006 * 111.00230 * 88.02972 * 17 15 13 46 46 H 1.09004 * 110.37135 * 155.85147 * 18 17 15 47 47 H 1.09002 * 110.36702 * 278.17722 * 18 17 15 48 48 H 0.96999 * 120.00482 * 179.97438 * 23 22 20 49 49 H 1.08993 * 110.06320 * 241.87062 * 28 19 18 50 50 H 1.09001 * 109.84421 * 120.60838 * 28 19 18 51 51 H 1.08999 * 109.58666 * 353.67223 * 29 9 7 52 52 H 1.08997 * 109.58726 * 114.09728 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 -1.2304 5 7 1.7067 -0.2501 -2.4546 6 8 2.7295 -1.6966 -1.1192 7 6 2.0323 -0.7105 1.2305 8 8 2.7586 -1.6754 1.1196 9 7 1.6746 -0.2734 2.4541 10 6 0.8874 0.9575 2.6089 11 6 -0.3586 0.6445 3.4433 12 6 0.0660 -0.0004 4.7647 13 6 0.7998 -1.3131 4.4811 14 1 0.1460 -1.9818 3.9213 15 6 1.1944 -1.9736 5.8036 16 1 1.8404 -1.3151 6.3842 17 6 1.8871 -3.3385 5.5502 18 6 1.5777 -4.0935 6.8670 19 7 0.2124 -3.6729 7.2313 20 6 -0.6580 -4.3808 8.0164 21 1 -1.6405 -3.9847 8.2262 22 6 -0.2773 -5.6077 8.5427 23 7 0.9203 -6.0903 8.2876 24 14 -1.4645 -6.5730 9.6144 25 1 -2.6930 -6.8808 8.8391 26 1 -0.8219 -7.8396 10.0481 27 1 -1.8220 -5.7657 10.8084 28 6 -0.0593 -2.3628 6.6149 29 6 2.0590 -1.0222 3.6585 30 1 -0.3633 0.3464 0.9675 31 1 -0.3634 0.6648 -0.7838 32 1 -0.3634 -1.0111 -0.1837 33 1 3.1152 1.4476 -0.1788 34 1 1.5381 2.0053 -0.7870 35 1 1.8301 1.9021 0.9658 36 1 1.1488 0.5385 -2.5435 37 1 2.0297 -0.7075 -3.2465 38 1 1.4868 1.7132 3.1167 39 1 0.5872 1.3251 1.6276 40 1 -0.9015 1.5674 3.6468 41 1 -1.0018 -0.0422 2.8930 42 1 0.7289 0.6773 5.3029 43 1 -0.8172 -0.2019 5.3707 44 1 1.4448 -3.8483 4.6944 45 1 2.9614 -3.2123 5.4148 46 1 1.6119 -5.1707 6.7038 47 1 2.2840 -3.8043 7.6452 48 1 1.1863 -6.9474 8.6556 49 1 -0.2468 -1.6175 7.3878 50 1 -0.9214 -2.4374 5.9520 51 1 2.5318 -1.9609 3.3697 52 1 2.7540 -0.4280 4.2518 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961191562.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:00 Heat of formation + Delta-G solvation = -65.301372 kcal Electronic energy + Delta-G solvation = -31174.484800 eV Core-core repulsion = 27173.721002 eV Total energy + Delta-G solvation = -4000.763798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.20146 -40.42819 -39.33687 -37.93397 -36.50985 -34.98940 -34.11313 -33.33414 -32.42211 -30.65622 -28.84239 -28.40015 -26.97047 -26.37932 -24.91046 -23.92057 -22.91444 -21.81750 -21.35016 -20.72150 -19.97826 -18.88035 -18.39083 -17.84587 -17.15632 -16.79822 -16.69498 -16.49864 -16.17035 -15.78266 -15.56525 -15.50973 -15.17371 -14.87014 -14.65498 -14.38722 -14.13599 -14.12337 -13.76151 -13.49193 -13.42693 -13.31967 -13.21826 -13.00932 -12.88131 -12.79701 -12.68302 -12.35498 -12.27673 -12.10231 -11.98904 -11.86333 -11.74156 -11.58596 -11.36659 -11.27683 -11.04348 -10.95969 -10.74209 -10.61388 -10.25905 -9.56650 -8.89432 -7.77721 -5.22730 1.43854 1.48282 1.54689 1.56158 1.71538 1.87536 2.48938 2.60261 3.28109 3.31379 3.64476 3.69770 3.71186 3.77946 3.90781 3.93721 4.01768 4.11193 4.17023 4.26171 4.37678 4.42841 4.55407 4.57640 4.61669 4.67613 4.69207 4.77120 4.77650 4.82010 4.88192 4.90923 4.93071 5.00264 5.06363 5.14500 5.20089 5.21927 5.23906 5.39251 5.42109 5.46872 5.55712 5.60712 5.63344 5.80213 5.93097 6.29300 6.41426 6.52463 7.09119 7.21529 7.44200 7.77997 8.43204 9.24372 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.002570 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.015631 B =10893.772430 C =11431.766228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.096 4.096 3 C -0.153 4.153 4 C 0.516 3.484 5 N -0.829 5.829 6 O -0.568 6.568 7 C 0.507 3.493 8 O -0.562 6.562 9 N -0.604 5.604 10 C 0.076 3.924 11 C -0.132 4.132 12 C -0.114 4.114 13 C -0.073 4.073 14 H 0.050 0.950 15 C -0.076 4.076 16 H 0.086 0.914 17 C -0.127 4.127 18 C 0.156 3.844 19 N -0.630 5.630 20 C -0.239 4.239 21 H 0.083 0.917 22 C -0.073 4.073 23 N -0.953 5.953 24 Si 0.984 3.016 25 H -0.276 1.276 26 H -0.295 1.295 27 H -0.275 1.275 28 C 0.143 3.857 29 C 0.123 3.877 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.419 0.581 37 H 0.408 0.592 38 H 0.093 0.907 39 H 0.134 0.866 40 H 0.111 0.889 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.065 0.935 47 H -0.013 1.013 48 H 0.246 0.754 49 H 0.027 0.973 50 H 0.024 0.976 51 H 0.056 0.944 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 26.811 -21.133 34.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.103 4.103 3 C -0.210 4.210 4 C 0.300 3.700 5 N -0.395 5.395 6 O -0.445 6.445 7 C 0.294 3.706 8 O -0.439 6.439 9 N -0.338 5.338 10 C -0.044 4.044 11 C -0.170 4.170 12 C -0.152 4.152 13 C -0.093 4.093 14 H 0.069 0.931 15 C -0.095 4.095 16 H 0.104 0.896 17 C -0.166 4.166 18 C 0.030 3.970 19 N -0.356 5.356 20 C -0.368 4.368 21 H 0.101 0.899 22 C -0.265 4.265 23 N -0.603 5.603 24 Si 0.811 3.189 25 H -0.202 1.202 26 H -0.221 1.221 27 H -0.201 1.201 28 C 0.019 3.981 29 C 0.000 4.000 30 H 0.119 0.881 31 H 0.138 0.862 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.136 0.864 35 H 0.122 0.878 36 H 0.252 0.748 37 H 0.239 0.761 38 H 0.111 0.889 39 H 0.151 0.849 40 H 0.129 0.871 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.005 0.995 48 H 0.056 0.944 49 H 0.045 0.955 50 H 0.042 0.958 51 H 0.075 0.925 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.883 25.527 -20.833 33.075 hybrid contribution -0.149 -1.537 0.629 1.668 sum -3.032 23.990 -20.204 31.510 Atomic orbital electron populations 1.22346 0.88081 1.03792 1.07011 1.20877 1.00460 0.98856 0.90093 1.22341 1.01943 0.89543 1.07149 1.20410 0.79572 0.83777 0.86281 1.43567 1.55479 1.34083 1.06389 1.90899 1.38741 1.27874 1.86973 1.20793 0.80415 0.84006 0.85389 1.90834 1.37466 1.29254 1.86326 1.48115 1.54520 1.26589 1.04542 1.22799 0.92581 0.85210 1.03804 1.21999 0.97240 1.02541 0.95237 1.21597 1.00352 0.94773 0.98429 1.21329 0.96382 0.97853 0.93750 0.93148 1.22055 0.96215 0.95502 0.95778 0.89613 1.22864 0.99797 0.96517 0.97400 1.21654 0.84467 0.99499 0.91336 1.44938 1.13291 1.19240 1.58157 1.19466 0.95657 0.99834 1.21881 0.89917 1.25726 0.98804 0.99122 1.02867 1.70091 1.20207 1.20038 1.49953 0.85074 0.77769 0.77456 0.78575 1.20201 1.22076 1.20059 1.21498 0.96017 0.86444 0.94188 1.21480 0.96431 0.96674 0.85446 0.88124 0.86193 0.93694 0.92999 0.86363 0.87848 0.74830 0.76074 0.88895 0.84895 0.87116 0.91979 0.90284 0.91793 0.93538 0.90815 0.91671 0.99481 0.94438 0.95455 0.95814 0.92507 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 7.92 71.98 0.57 -0.82 16 2 C -0.10 -1.54 0.59 -53.67 -0.03 -1.57 16 3 C -0.15 -1.03 7.93 71.98 0.57 -0.46 16 4 C 0.52 11.27 6.70 87.66 0.59 11.86 16 5 N -0.83 -7.88 8.68 -173.53 -1.51 -9.38 16 6 O -0.57 -20.93 15.02 20.40 0.31 -20.62 16 7 C 0.51 13.88 6.48 87.66 0.57 14.44 16 8 O -0.56 -23.12 13.62 20.41 0.28 -22.84 16 9 N -0.60 -13.04 2.97 -818.88 -2.43 -15.47 16 10 C 0.08 0.79 3.95 86.36 0.34 1.13 16 11 C -0.13 -1.51 5.74 30.67 0.18 -1.33 16 12 C -0.11 -2.14 5.01 30.62 0.15 -1.98 16 13 C -0.07 -2.00 1.71 -10.71 -0.02 -2.01 16 14 H 0.05 1.61 8.12 -2.39 -0.02 1.60 16 15 C -0.08 -2.63 2.49 -9.61 -0.02 -2.66 16 16 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 17 C -0.13 -5.34 5.61 31.98 0.18 -5.16 16 18 C 0.16 8.35 5.89 86.85 0.51 8.86 16 19 N -0.63 -34.39 3.40 -691.22 -2.35 -36.74 16 20 C -0.24 -14.03 10.28 84.04 0.86 -13.17 16 21 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 22 C -0.07 -4.35 5.49 84.86 0.47 -3.88 16 23 N -0.95 -60.05 10.09 21.65 0.22 -59.83 16 24 Si 0.98 47.37 29.55 68.60 2.03 49.39 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 26 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 27 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 28 C 0.14 6.03 5.91 86.67 0.51 6.54 16 29 C 0.12 3.30 5.41 86.36 0.47 3.77 16 30 H 0.10 0.70 3.84 -2.39 -0.01 0.69 16 31 H 0.12 -0.03 7.75 -2.38 -0.02 -0.05 16 32 H 0.04 0.66 8.10 -2.39 -0.02 0.64 16 33 H 0.05 0.57 8.11 -2.39 -0.02 0.55 16 34 H 0.12 -0.22 7.74 -2.39 -0.02 -0.24 16 35 H 0.10 0.38 4.75 -2.39 -0.01 0.37 16 36 H 0.42 0.13 8.12 -92.70 -0.75 -0.62 16 37 H 0.41 3.59 8.93 -92.71 -0.83 2.76 16 38 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.13 0.57 2.82 -2.39 -0.01 0.57 16 40 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.06 0.83 7.42 -2.39 -0.02 0.81 16 42 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.06 1.33 7.27 -2.39 -0.02 1.31 16 44 H 0.05 2.05 8.05 -2.39 -0.02 2.03 16 45 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 46 H 0.07 4.01 5.88 -2.38 -0.01 4.00 16 47 H -0.01 -0.73 8.14 -2.39 -0.02 -0.74 16 48 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 49 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.02 0.99 7.68 -2.39 -0.02 0.97 16 51 H 0.06 1.99 6.47 -2.39 -0.02 1.97 16 52 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -94.85 384.05 1.80 -93.05 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -0.63 Total: 8.89 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 5.89 Total: 13.55 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -6.07 Total: -121.42 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: 0.58 Total: -43.46 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.39 kcal Total: -94.85 1.80 -93.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961191562.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.749 kcal (2) G-P(sol) polarization free energy of solvation -94.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds