Wall clock time and date at job start Tue Mar 31 2020 19:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47494 * 2 1 4 4 C 1.50703 * 109.46959 * 239.99972 * 2 1 3 5 5 N 1.34780 * 120.00034 * 60.00351 * 4 2 1 6 6 O 1.21280 * 120.00521 * 240.00509 * 4 2 1 7 7 C 1.50696 * 109.47068 * 120.00244 * 2 1 3 8 8 O 1.21284 * 119.99811 * 121.91590 * 7 2 1 9 9 N 1.34774 * 120.00114 * 301.91567 * 7 2 1 10 10 C 1.46931 * 120.62830 * 354.91182 * 9 7 2 11 11 C 1.53195 * 108.77445 * 126.41163 * 10 9 7 12 12 C 1.53038 * 109.31267 * 54.63482 * 11 10 9 13 13 C 1.53037 * 109.53759 * 298.63050 * 12 11 10 14 14 H 1.09000 * 109.52956 * 301.40355 * 13 12 11 15 15 C 1.53005 * 109.49986 * 181.31581 * 13 12 11 16 16 H 1.09002 * 110.64081 * 297.02429 * 15 13 12 17 17 C 1.55161 * 110.71577 * 60.16476 * 15 13 12 18 18 C 1.54908 * 101.57801 * 153.86587 * 17 15 13 19 19 N 1.47416 * 104.83526 * 322.98651 * 18 17 15 20 20 C 1.36940 * 125.65103 * 204.09449 * 19 18 17 21 21 H 1.08000 * 119.99894 * 180.02562 * 20 19 18 22 22 C 1.38807 * 119.99784 * 359.74788 * 20 19 18 23 23 N 1.31614 * 120.00155 * 0.27890 * 22 20 19 24 24 Si 1.86798 * 119.99824 * 180.27726 * 22 20 19 25 25 H 1.48495 * 109.47577 * 60.00137 * 24 22 20 26 26 H 1.48500 * 109.47133 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47124 * 300.00068 * 24 22 20 28 28 C 1.47023 * 108.70178 * 24.36028 * 19 18 17 29 29 C 1.46931 * 120.63201 * 174.92704 * 9 7 2 30 30 H 1.08996 * 109.47310 * 289.47926 * 1 2 3 31 31 H 1.09007 * 109.47088 * 49.47569 * 1 2 3 32 32 H 1.09000 * 109.47709 * 169.47348 * 1 2 3 33 33 H 1.08997 * 109.47122 * 190.05057 * 3 2 1 34 34 H 1.09002 * 109.47021 * 310.04742 * 3 2 1 35 35 H 1.08995 * 109.47080 * 70.04175 * 3 2 1 36 36 H 0.97002 * 119.99823 * 359.97438 * 5 4 2 37 37 H 0.97002 * 120.00121 * 180.02562 * 5 4 2 38 38 H 1.09000 * 109.58358 * 246.19681 * 10 9 7 39 39 H 1.08996 * 109.58653 * 6.47901 * 10 9 7 40 40 H 1.09001 * 109.48988 * 174.58348 * 11 10 9 41 41 H 1.08998 * 109.49555 * 294.64971 * 11 10 9 42 42 H 1.09002 * 109.45940 * 178.61590 * 12 11 10 43 43 H 1.08998 * 109.46166 * 58.65396 * 12 11 10 44 44 H 1.08994 * 111.00426 * 35.78878 * 17 15 13 45 45 H 1.08995 * 111.03720 * 271.95578 * 17 15 13 46 46 H 1.09009 * 110.36229 * 204.14912 * 18 17 15 47 47 H 1.09000 * 110.46306 * 81.87856 * 18 17 15 48 48 H 0.96997 * 120.00480 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.88274 * 118.12766 * 28 19 18 50 50 H 1.09002 * 109.88608 * 239.29200 * 28 19 18 51 51 H 1.08998 * 109.58171 * 113.79938 * 29 9 7 52 52 H 1.08998 * 109.58610 * 353.38038 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7067 -0.2499 -2.4546 6 8 2.7295 -1.6966 -1.1193 7 6 2.0323 -0.7104 1.2304 8 8 2.7580 -1.6759 1.1194 9 7 1.6752 -0.2730 2.4541 10 6 0.8891 0.9587 2.6089 11 6 -0.3532 0.6484 3.4498 12 6 0.0772 0.0072 4.7711 13 6 0.8091 -1.3066 4.4879 14 1 0.1528 -1.9771 3.9331 15 6 1.2102 -1.9631 5.8105 16 1 1.9106 -1.3311 6.3564 17 6 -0.0424 -2.2677 6.6740 18 6 0.4549 -3.4556 7.5350 19 7 1.3104 -4.2452 6.6307 20 6 1.5939 -5.5785 6.7618 21 1 2.2351 -6.0674 6.0434 22 6 1.0617 -6.3001 7.8214 23 7 0.2802 -5.7043 8.6969 24 14 1.4546 -8.1171 8.0047 25 1 2.9217 -8.2941 8.1511 26 1 0.7684 -8.6531 9.2077 27 1 0.9855 -8.8489 6.8006 28 6 1.8141 -3.3626 5.5681 29 6 2.0647 -1.0186 3.6588 30 1 -0.3634 0.3427 0.9688 31 1 -0.3633 0.6678 -0.7812 32 1 -0.3634 -1.0103 -0.1877 33 1 3.1152 1.4477 -0.1793 34 1 1.5378 2.0055 -0.7867 35 1 1.8305 1.9020 0.9659 36 1 1.1488 0.5386 -2.5436 37 1 2.0297 -0.7074 -3.2467 38 1 1.4911 1.7155 3.1119 39 1 0.5868 1.3249 1.6278 40 1 -0.8948 1.5722 3.6531 41 1 -0.9991 -0.0396 2.9044 42 1 -0.8035 -0.1921 5.3818 43 1 0.7426 0.6860 5.3044 44 1 -0.8851 -2.5638 6.0493 45 1 -0.3035 -1.4141 7.2995 46 1 -0.3887 -4.0546 7.8784 47 1 1.0334 -3.0941 8.3852 48 1 -0.0920 -6.2086 9.4371 49 1 2.9020 -3.3118 5.6131 50 1 1.4983 -3.7370 4.5944 51 1 2.7626 -0.4230 4.2473 52 1 2.5358 -1.9583 3.3706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961191564.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:04 Heat of formation + Delta-G solvation = -36.628122 kcal Electronic energy + Delta-G solvation = -31222.270026 eV Core-core repulsion = 27222.749593 eV Total energy + Delta-G solvation = -3999.520433 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.32652 -39.39397 -37.97130 -36.68700 -35.52821 -33.68323 -33.04157 -32.19390 -30.97443 -28.98142 -27.96258 -27.10308 -25.97920 -24.70785 -24.08758 -22.73549 -21.91072 -20.36683 -19.92427 -19.33540 -19.14005 -17.67539 -17.02693 -16.74676 -16.10413 -15.83652 -15.60444 -15.17559 -14.80567 -14.68517 -14.45439 -14.20250 -14.07993 -13.77019 -13.64793 -13.32890 -13.20781 -12.90313 -12.62376 -12.48943 -12.41431 -12.29496 -11.96657 -11.68481 -11.57194 -11.50613 -11.19981 -10.99504 -10.89912 -10.76602 -10.64297 -10.57958 -10.17894 -10.05960 -9.96246 -9.89169 -9.72511 -9.68131 -9.42542 -9.25924 -8.58828 -8.55298 -6.72748 -5.56696 -2.97356 2.40465 2.65539 2.73909 3.30888 3.47363 3.50641 3.52688 4.01422 4.25516 4.49452 4.49809 4.57748 4.63401 4.73907 4.80635 4.95271 5.01826 5.12465 5.14769 5.17232 5.20602 5.22513 5.47228 5.52323 5.55183 5.58927 5.61682 5.70013 5.71045 5.76608 5.86845 5.97455 5.99888 6.07927 6.12879 6.33215 6.37308 6.49577 6.53038 6.56555 6.68958 6.73290 6.88546 7.02638 7.09122 7.36175 7.60750 7.72808 7.94148 8.04573 8.25195 8.45715 9.32018 9.93048 10.58602 11.47377 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016474 B = 0.002815 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.290339 B = 9944.528835 C =11158.668177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.103 4.103 3 C -0.156 4.156 4 C 0.524 3.476 5 N -0.858 5.858 6 O -0.492 6.492 7 C 0.521 3.479 8 O -0.491 6.491 9 N -0.610 5.610 10 C 0.084 3.916 11 C -0.138 4.138 12 C -0.113 4.113 13 C -0.086 4.086 14 H 0.074 0.926 15 C -0.092 4.092 16 H 0.070 0.930 17 C -0.135 4.135 18 C 0.152 3.848 19 N -0.605 5.605 20 C -0.219 4.219 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.925 5.925 24 Si 0.914 3.086 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.140 3.860 29 C 0.118 3.882 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.397 0.603 37 H 0.402 0.598 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.104 0.896 47 H 0.009 0.991 48 H 0.251 0.749 49 H 0.019 0.981 50 H 0.023 0.977 51 H 0.066 0.934 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.750 23.394 -18.677 30.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.110 4.110 3 C -0.213 4.213 4 C 0.306 3.694 5 N -0.424 5.424 6 O -0.363 6.363 7 C 0.305 3.695 8 O -0.362 6.362 9 N -0.345 5.345 10 C -0.039 4.039 11 C -0.176 4.176 12 C -0.151 4.151 13 C -0.106 4.106 14 H 0.092 0.908 15 C -0.112 4.112 16 H 0.088 0.912 17 C -0.174 4.174 18 C 0.027 3.973 19 N -0.331 5.331 20 C -0.347 4.347 21 H 0.094 0.906 22 C -0.208 4.208 23 N -0.574 5.574 24 Si 0.744 3.256 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.014 3.986 29 C -0.004 4.004 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.233 0.767 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.122 0.878 47 H 0.027 0.973 48 H 0.062 0.938 49 H 0.037 0.963 50 H 0.041 0.959 51 H 0.084 0.916 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.902 21.998 -18.323 28.776 hybrid contribution 0.047 -0.593 -0.226 0.636 sum -2.854 21.406 -18.548 28.468 Atomic orbital electron populations 1.22249 0.90636 1.03931 1.04628 1.20835 0.98786 0.97716 0.93679 1.22235 1.02541 0.91998 1.04504 1.19896 0.80511 0.84572 0.84439 1.43811 1.56728 1.34025 1.07802 1.90926 1.35088 1.24461 1.85803 1.19803 0.81395 0.84639 0.83638 1.90871 1.34196 1.25984 1.85191 1.48023 1.54780 1.25829 1.05827 1.22369 0.93010 0.86843 1.01660 1.21992 0.97015 1.01337 0.97247 1.21567 1.00787 0.96427 0.96310 1.21506 0.96334 0.96574 0.96174 0.90753 1.22137 0.98334 0.96486 0.94198 0.91207 1.23011 0.96242 0.99583 0.98529 1.21905 0.96131 0.89288 0.89998 1.44509 1.55586 1.05506 1.27464 1.19073 1.24300 0.83372 1.07985 0.90604 1.24763 1.00292 0.98368 0.97417 1.69796 1.37154 1.34382 1.16084 0.86159 0.77712 0.84683 0.77028 1.21252 1.21627 1.21187 1.21344 0.95768 0.88921 0.92587 1.21752 0.96693 0.97614 0.84344 0.89214 0.90854 0.91251 0.91352 0.90798 0.89469 0.77473 0.76667 0.91276 0.87982 0.90776 0.91366 0.91048 0.91875 0.92339 0.92617 0.87829 0.97271 0.93829 0.96330 0.95895 0.91602 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 7.92 37.16 0.29 -0.71 16 2 C -0.10 -0.95 0.59 -156.81 -0.09 -1.04 16 3 C -0.16 -0.88 7.93 37.16 0.29 -0.58 16 4 C 0.52 5.97 6.70 -10.98 -0.07 5.90 16 5 N -0.86 -5.22 8.68 31.22 0.27 -4.94 16 6 O -0.49 -8.69 15.02 -18.96 -0.28 -8.97 16 7 C 0.52 7.25 6.48 -10.99 -0.07 7.18 16 8 O -0.49 -9.62 13.62 -18.96 -0.26 -9.88 16 9 N -0.61 -7.12 2.97 -172.76 -0.51 -7.63 16 10 C 0.08 0.62 3.94 -3.71 -0.01 0.60 16 11 C -0.14 -1.06 5.74 -26.61 -0.15 -1.21 16 12 C -0.11 -1.19 4.97 -26.69 -0.13 -1.32 16 13 C -0.09 -1.20 1.74 -90.50 -0.16 -1.36 16 14 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 15 C -0.09 -1.59 2.48 -88.78 -0.22 -1.82 16 16 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 17 C -0.13 -2.54 5.38 -24.58 -0.13 -2.67 16 18 C 0.15 3.78 5.88 -2.53 -0.01 3.77 16 19 N -0.60 -16.28 3.39 -170.07 -0.58 -16.86 16 20 C -0.22 -6.43 10.27 -15.06 -0.15 -6.58 16 21 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 22 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 23 N -0.92 -27.80 10.09 55.49 0.56 -27.24 16 24 Si 0.91 23.01 29.55 -169.99 -5.02 17.98 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 C 0.14 3.10 6.11 -3.06 -0.02 3.08 16 29 C 0.12 1.64 5.46 -3.71 -0.02 1.62 16 30 H 0.09 0.52 3.87 -51.93 -0.20 0.32 16 31 H 0.07 0.22 7.75 -51.93 -0.40 -0.18 16 32 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 34 H 0.07 0.18 7.74 -51.93 -0.40 -0.22 16 35 H 0.09 0.41 4.75 -51.93 -0.25 0.16 16 36 H 0.40 0.99 8.12 -40.82 -0.33 0.65 16 37 H 0.40 2.17 8.93 -40.82 -0.36 1.81 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.52 2.83 -51.93 -0.15 0.37 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.56 7.43 -51.93 -0.39 0.18 16 42 H 0.07 0.78 7.20 -51.93 -0.37 0.41 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 45 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 46 H 0.10 2.90 5.88 -51.92 -0.31 2.60 16 47 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 48 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.02 0.53 7.77 -51.93 -0.40 0.12 16 51 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 52 H 0.10 1.64 6.58 -51.93 -0.34 1.30 16 LS Contribution 384.11 15.07 5.79 5.79 Total: -1.00 -38.79 384.11 -9.31 -48.10 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.51 Total: -0.71 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -0.76 Total: 4.36 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.26 Total: -56.67 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.54 Total: -18.85 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.79 -9.31 -48.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961191564.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.474 kcal (2) G-P(sol) polarization free energy of solvation -38.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds