Wall clock time and date at job start Tue Mar 31 2020 19:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47340 * 2 1 4 4 C 1.50710 * 109.46920 * 239.99969 * 2 1 3 5 5 N 1.34776 * 119.99688 * 60.00071 * 4 2 1 6 6 O 1.21275 * 119.99649 * 240.00274 * 4 2 1 7 7 C 1.50697 * 109.47137 * 120.00335 * 2 1 3 8 8 O 1.21282 * 119.99956 * 2.90390 * 7 2 1 9 9 N 1.34781 * 120.00307 * 182.90371 * 7 2 1 10 10 C 1.46922 * 120.62728 * 353.94652 * 9 7 2 11 11 C 1.53187 * 108.77597 * 233.58390 * 10 9 7 12 12 C 1.53037 * 109.33971 * 305.35163 * 11 10 9 13 13 C 1.53108 * 109.50543 * 61.34499 * 12 11 10 14 14 H 1.08999 * 109.48801 * 58.61627 * 13 12 11 15 15 C 1.53006 * 109.51616 * 178.68654 * 13 12 11 16 16 H 1.09000 * 109.86902 * 302.56971 * 15 13 12 17 17 C 1.54319 * 109.88324 * 63.58558 * 15 13 12 18 18 C 1.55154 * 102.94202 * 141.60712 * 17 15 13 19 19 C 1.54910 * 101.58362 * 324.50296 * 18 17 15 20 20 N 1.47018 * 109.87854 * 181.55475 * 15 13 12 21 21 C 1.36938 * 125.65354 * 61.61052 * 20 15 13 22 22 H 1.08001 * 119.99945 * 10.09699 * 21 20 15 23 23 C 1.38811 * 120.00205 * 190.10250 * 21 20 15 24 24 N 1.31615 * 119.99869 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99805 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47287 * 89.99648 * 25 23 21 27 27 H 1.48499 * 109.46742 * 209.99540 * 25 23 21 28 28 H 1.48503 * 109.47102 * 329.99173 * 25 23 21 29 29 C 1.46921 * 120.62991 * 173.92103 * 9 7 2 30 30 H 1.09003 * 109.47164 * 304.63330 * 1 2 3 31 31 H 1.09006 * 109.47406 * 64.62869 * 1 2 3 32 32 H 1.08998 * 109.47903 * 184.62985 * 1 2 3 33 33 H 1.09007 * 109.47117 * 185.60160 * 3 2 1 34 34 H 1.08997 * 109.47392 * 305.60172 * 3 2 1 35 35 H 1.09000 * 109.46812 * 65.60425 * 3 2 1 36 36 H 0.97001 * 120.00196 * 0.02562 * 5 4 2 37 37 H 0.96999 * 119.99344 * 179.97438 * 5 4 2 38 38 H 1.08998 * 109.58872 * 113.79933 * 10 9 7 39 39 H 1.08999 * 109.58622 * 353.37124 * 10 9 7 40 40 H 1.08996 * 109.49503 * 65.31647 * 11 10 9 41 41 H 1.08996 * 109.50105 * 185.38047 * 11 10 9 42 42 H 1.09003 * 109.46208 * 181.39872 * 12 11 10 43 43 H 1.09001 * 109.46298 * 301.35958 * 12 11 10 44 44 H 1.09000 * 110.71800 * 259.97360 * 17 15 13 45 45 H 1.08998 * 110.71790 * 23.24818 * 17 15 13 46 46 H 1.09008 * 111.00309 * 82.57109 * 18 17 15 47 47 H 1.08998 * 111.00589 * 206.38384 * 18 17 15 48 48 H 1.08994 * 110.36626 * 155.84879 * 19 18 17 49 49 H 1.09009 * 110.36323 * 278.05654 * 19 18 17 50 50 H 0.97001 * 119.99752 * 180.02562 * 24 23 21 51 51 H 1.09002 * 109.58595 * 246.20427 * 29 9 7 52 52 H 1.08999 * 109.58742 * 6.62922 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2306 5 7 1.7066 -0.2499 -2.4546 6 8 2.7294 -1.6965 -1.1192 7 6 2.0323 -0.7105 1.2304 8 8 1.2454 -1.2173 2.0017 9 7 3.3560 -0.7827 1.4737 10 6 4.3265 -0.2915 0.4861 11 6 5.3311 -1.4079 0.1846 12 6 5.9582 -1.8926 1.4937 13 6 4.8657 -2.4582 2.4052 14 1 4.3570 -3.2778 1.8977 15 6 5.4965 -2.9728 3.7007 16 1 6.2509 -3.7256 3.4718 17 6 6.1408 -1.8017 4.4720 18 6 5.8171 -2.1399 5.9512 19 6 4.4110 -2.7775 5.8239 20 7 4.4589 -3.5516 4.5665 21 6 3.6694 -4.6268 4.2568 22 1 3.8884 -5.2240 3.3839 23 6 2.5876 -4.9491 5.0646 24 7 2.3210 -4.2217 6.1286 25 14 1.5111 -6.4163 4.6425 26 1 2.0496 -7.6320 5.3037 27 1 0.1263 -6.1669 5.1172 28 1 1.5015 -6.6162 3.1710 29 6 3.8557 -1.3536 2.7318 30 1 -0.3634 0.5841 0.8456 31 1 -0.3634 0.4404 -0.9286 32 1 -0.3635 -1.0242 0.0829 33 1 3.1254 1.4440 -0.1003 34 1 1.5971 1.9845 -0.8355 35 1 1.7609 1.9265 0.9359 36 1 1.1493 0.5390 -2.5436 37 1 2.0303 -0.7070 -3.2466 38 1 4.8522 0.5739 0.8895 39 1 3.8059 -0.0112 -0.4296 40 1 4.8180 -2.2373 -0.3020 41 1 6.1119 -1.0268 -0.4736 42 1 6.6916 -2.6699 1.2792 43 1 6.4500 -1.0572 1.9920 44 1 7.2182 -1.7786 4.3085 45 1 5.6856 -0.8539 4.1846 46 1 6.5348 -2.8543 6.3547 47 1 5.7835 -1.2366 6.5602 48 1 4.2166 -3.4390 6.6680 49 1 3.6468 -2.0023 5.7666 50 1 1.5652 -4.4472 6.6933 51 1 4.3430 -0.5748 3.3184 52 1 3.0246 -1.7742 3.2979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963318155.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:41 Heat of formation + Delta-G solvation = -69.621374 kcal Electronic energy + Delta-G solvation = -32744.557596 eV Core-core repulsion = 28743.606469 eV Total energy + Delta-G solvation = -4000.951127 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.34026 -40.43485 -39.47617 -37.85326 -36.01387 -34.81632 -34.21867 -33.54212 -32.24706 -31.17952 -28.74325 -27.93604 -26.90080 -26.50570 -24.95383 -24.03450 -22.82599 -22.15098 -21.55020 -20.11761 -19.82087 -18.95444 -18.62084 -17.82288 -17.43321 -17.04890 -16.63086 -16.41694 -15.99647 -15.81459 -15.73068 -15.66199 -15.13373 -14.86003 -14.41964 -14.30496 -13.99318 -13.81675 -13.72534 -13.62567 -13.42607 -13.23073 -13.12874 -13.08908 -12.95791 -12.90888 -12.71150 -12.65865 -12.30140 -12.12847 -11.96229 -11.76160 -11.67478 -11.49992 -11.33825 -11.14851 -11.12787 -10.96804 -10.75533 -10.66920 -10.63341 -9.51364 -8.78924 -7.85775 -5.19094 1.32596 1.37453 1.41327 1.43967 1.53155 2.03266 2.45075 2.53447 3.23979 3.31515 3.63097 3.74018 3.77218 3.88344 3.90854 3.96639 4.13201 4.14784 4.17511 4.29312 4.32654 4.40513 4.51614 4.58842 4.61078 4.68092 4.72483 4.77040 4.78386 4.85302 4.91828 4.96297 5.02620 5.08126 5.13807 5.17112 5.19125 5.22822 5.35849 5.36817 5.46275 5.57707 5.61294 5.64721 5.70577 5.81995 5.89235 6.26927 6.35649 6.48737 7.12077 7.17983 7.28115 7.81893 8.46485 9.23555 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.004730 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.828491 B = 5918.636619 C = 7062.440060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.100 4.100 3 C -0.146 4.146 4 C 0.528 3.472 5 N -0.820 5.820 6 O -0.568 6.568 7 C 0.515 3.485 8 O -0.592 6.592 9 N -0.595 5.595 10 C 0.107 3.893 11 C -0.127 4.127 12 C -0.104 4.104 13 C -0.093 4.093 14 H 0.016 0.984 15 C 0.157 3.843 16 H 0.032 0.968 17 C -0.113 4.113 18 C -0.134 4.134 19 C 0.173 3.827 20 N -0.612 5.612 21 C -0.222 4.222 22 H 0.063 0.937 23 C -0.061 4.061 24 N -0.944 5.944 25 Si 0.961 3.039 26 H -0.275 1.275 27 H -0.295 1.295 28 H -0.285 1.285 29 C 0.138 3.862 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.033 0.967 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.420 0.580 37 H 0.414 0.586 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.044 0.956 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.084 0.916 48 H 0.039 0.961 49 H -0.015 1.015 50 H 0.244 0.756 51 H 0.080 0.920 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.626 19.436 -19.345 27.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.107 4.107 3 C -0.203 4.203 4 C 0.311 3.689 5 N -0.386 5.386 6 O -0.446 6.446 7 C 0.303 3.697 8 O -0.473 6.473 9 N -0.325 5.325 10 C -0.014 4.014 11 C -0.165 4.165 12 C -0.142 4.142 13 C -0.115 4.115 14 H 0.035 0.965 15 C 0.050 3.950 16 H 0.050 0.950 17 C -0.150 4.150 18 C -0.173 4.173 19 C 0.048 3.952 20 N -0.336 5.336 21 C -0.352 4.352 22 H 0.081 0.919 23 C -0.254 4.254 24 N -0.593 5.593 25 Si 0.790 3.210 26 H -0.202 1.202 27 H -0.222 1.222 28 H -0.211 1.211 29 C 0.015 3.985 30 H 0.089 0.911 31 H 0.132 0.868 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.135 0.865 35 H 0.090 0.910 36 H 0.253 0.747 37 H 0.247 0.753 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.063 0.937 41 H 0.120 0.880 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.117 0.883 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.102 0.898 48 H 0.058 0.942 49 H 0.003 0.997 50 H 0.053 0.947 51 H 0.098 0.902 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.480 18.461 -18.617 26.785 hybrid contribution -1.577 -1.608 0.049 2.253 sum 3.902 16.853 -18.568 25.377 Atomic orbital electron populations 1.21708 0.89342 1.02319 1.04890 1.21146 1.00030 0.99367 0.90116 1.22216 1.03307 0.89058 1.05736 1.20063 0.79256 0.83723 0.85845 1.43498 1.54953 1.33918 1.06207 1.90876 1.39102 1.27453 1.87200 1.20834 0.82400 0.79230 0.87229 1.90744 1.56537 1.48713 1.51280 1.48087 1.05527 1.59843 1.19050 1.22235 0.90373 0.96979 0.91861 1.21855 0.98482 0.98625 0.97558 1.21558 0.96336 1.01274 0.95001 1.21740 0.96391 0.95985 0.97383 0.96492 1.21212 0.89936 0.93973 0.89908 0.95049 1.22674 1.01162 0.97094 0.94101 1.22873 0.96788 1.00426 0.97192 1.21339 0.92536 0.92346 0.88955 1.44807 1.40701 1.32774 1.15290 1.19097 1.05215 1.03054 1.07823 0.91943 1.25459 0.99424 1.02003 0.98557 1.70115 1.30384 1.41543 1.17279 0.85331 0.78393 0.79997 0.77236 1.20176 1.22186 1.21058 1.21367 0.96909 0.95370 0.84833 0.91090 0.86766 0.94774 0.89822 0.86476 0.91020 0.74730 0.75344 0.88888 0.88599 0.93725 0.87997 0.91496 0.89218 0.88280 0.90322 0.91718 0.89767 0.94237 0.99706 0.94680 0.90214 0.94313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 7.78 71.98 0.56 -2.14 16 2 C -0.10 -2.36 0.60 -53.67 -0.03 -2.39 16 3 C -0.15 -1.90 8.00 71.98 0.58 -1.33 16 4 C 0.53 11.75 5.04 87.66 0.44 12.19 16 5 N -0.82 -7.98 8.64 -173.53 -1.50 -9.48 16 6 O -0.57 -18.73 13.39 -3.01 -0.04 -18.77 16 7 C 0.52 19.81 5.93 87.66 0.52 20.33 16 8 O -0.59 -30.47 15.32 -3.04 -0.05 -30.51 16 9 N -0.59 -21.05 2.84 -818.94 -2.33 -23.38 16 10 C 0.11 2.58 3.75 86.36 0.32 2.90 16 11 C -0.13 -3.28 5.85 30.67 0.18 -3.10 16 12 C -0.10 -2.92 4.96 30.64 0.15 -2.77 16 13 C -0.09 -3.79 2.12 -10.69 -0.02 -3.81 16 14 H 0.02 0.85 7.94 -2.39 -0.02 0.83 16 15 C 0.16 6.66 2.91 45.34 0.13 6.79 16 16 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 17 C -0.11 -3.69 5.29 31.78 0.17 -3.52 16 18 C -0.13 -5.04 7.08 31.99 0.23 -4.81 16 19 C 0.17 9.09 5.53 86.79 0.48 9.57 16 20 N -0.61 -33.52 2.59 -667.45 -1.73 -35.25 16 21 C -0.22 -13.81 9.80 84.03 0.82 -12.99 16 22 H 0.06 3.89 7.83 -2.91 -0.02 3.87 16 23 C -0.06 -3.89 5.48 84.86 0.46 -3.42 16 24 N -0.94 -61.98 10.42 21.65 0.23 -61.76 16 25 Si 0.96 52.12 29.55 68.60 2.03 54.15 16 26 H -0.28 -14.11 7.11 99.48 0.71 -13.41 16 27 H -0.30 -16.09 7.11 99.48 0.71 -15.39 16 28 H -0.28 -15.36 7.11 99.48 0.71 -14.66 16 29 C 0.14 5.79 5.31 86.36 0.46 6.25 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.11 1.19 7.44 -2.38 -0.02 1.17 16 32 H 0.03 0.99 7.92 -2.39 -0.02 0.97 16 33 H 0.08 0.99 5.02 -2.38 -0.01 0.97 16 34 H 0.12 0.45 7.72 -2.39 -0.02 0.43 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.42 0.84 7.72 -92.71 -0.72 0.13 16 37 H 0.41 3.19 8.93 -92.71 -0.83 2.36 16 38 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16 39 H 0.10 1.98 3.04 -2.39 -0.01 1.98 16 40 H 0.04 1.50 6.74 -2.39 -0.02 1.48 16 41 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 43 H 0.09 2.01 7.34 -2.39 -0.02 2.00 16 44 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.08 2.39 5.39 -2.39 -0.01 2.37 16 46 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 47 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 48 H 0.04 2.35 6.60 -2.39 -0.02 2.34 16 49 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 50 H 0.24 15.64 8.31 -92.71 -0.77 14.87 16 51 H 0.08 2.96 5.74 -2.39 -0.01 2.94 16 52 H 0.04 2.19 6.71 -2.39 -0.02 2.17 16 Total: -1.00 -95.50 381.27 1.47 -94.04 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -0.60 Total: 13.22 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 5.45 Total: 17.75 kcal Atomic # 7 Polarization: -124.54 SS G_CDS: -5.33 Total: -129.87 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -0.09 Total: -49.28 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 2.03 Total: 54.15 kcal Total: -95.50 1.47 -94.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963318155.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.416 kcal (2) G-P(sol) polarization free energy of solvation -95.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds