Wall clock time and date at job start Tue Mar 31 2020 19:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47124 * 2 1 4 4 C 1.50710 * 109.46943 * 240.00005 * 2 1 3 5 5 N 1.34774 * 119.99945 * 60.00071 * 4 2 1 6 6 O 1.21282 * 120.00034 * 239.99730 * 4 2 1 7 7 C 1.50700 * 109.47489 * 120.00187 * 2 1 3 8 8 O 1.21281 * 119.99642 * 3.97085 * 7 2 1 9 9 N 1.34779 * 119.99932 * 183.97269 * 7 2 1 10 10 C 1.46920 * 120.63149 * 355.06532 * 9 7 2 11 11 C 1.53193 * 108.77740 * 233.58625 * 10 9 7 12 12 C 1.53046 * 109.31284 * 305.36777 * 11 10 9 13 13 C 1.53044 * 109.53741 * 61.36214 * 12 11 10 14 14 H 1.08998 * 109.49732 * 58.58975 * 13 12 11 15 15 C 1.52999 * 109.49615 * 178.68352 * 13 12 11 16 16 H 1.09005 * 109.87064 * 64.87337 * 15 13 12 17 17 C 1.54324 * 109.88453 * 303.69740 * 15 13 12 18 18 C 1.55154 * 102.94269 * 218.38959 * 17 15 13 19 19 C 1.54915 * 101.58193 * 35.50146 * 18 17 15 20 20 N 1.47020 * 109.88342 * 185.88711 * 15 13 12 21 21 C 1.36933 * 125.64645 * 298.39994 * 20 15 13 22 22 H 1.08007 * 120.00184 * 138.07434 * 21 20 15 23 23 C 1.38813 * 119.99838 * 318.06453 * 21 20 15 24 24 N 1.31626 * 119.99784 * 167.28633 * 23 21 20 25 25 Si 1.86793 * 120.00343 * 347.28546 * 23 21 20 26 26 H 1.48507 * 109.47035 * 86.30022 * 25 23 21 27 27 H 1.48496 * 109.47715 * 206.30181 * 25 23 21 28 28 H 1.48501 * 109.47259 * 326.30752 * 25 23 21 29 29 C 1.46929 * 120.63052 * 175.04430 * 9 7 2 30 30 H 1.08998 * 109.47036 * 304.25161 * 1 2 3 31 31 H 1.08994 * 109.47516 * 64.25699 * 1 2 3 32 32 H 1.09007 * 109.46918 * 184.25565 * 1 2 3 33 33 H 1.09005 * 109.47440 * 173.40846 * 3 2 1 34 34 H 1.09009 * 109.47142 * 293.40150 * 3 2 1 35 35 H 1.08998 * 109.47410 * 53.40274 * 3 2 1 36 36 H 0.97008 * 119.99601 * 359.97438 * 5 4 2 37 37 H 0.96999 * 120.00003 * 179.97438 * 5 4 2 38 38 H 1.09000 * 109.58965 * 353.37719 * 10 9 7 39 39 H 1.09000 * 109.58715 * 113.65650 * 10 9 7 40 40 H 1.08999 * 109.49731 * 65.31626 * 11 10 9 41 41 H 1.08995 * 109.50285 * 185.38406 * 11 10 9 42 42 H 1.09002 * 109.46119 * 181.38285 * 12 11 10 43 43 H 1.08998 * 109.45616 * 301.35605 * 12 11 10 44 44 H 1.09000 * 110.71738 * 336.75591 * 17 15 13 45 45 H 1.09000 * 110.71921 * 100.02516 * 17 15 13 46 46 H 1.08997 * 111.00215 * 277.42509 * 18 17 15 47 47 H 1.09000 * 111.03805 * 153.58626 * 18 17 15 48 48 H 1.08994 * 110.36714 * 204.15335 * 19 18 17 49 49 H 1.08996 * 110.36364 * 81.82833 * 19 18 17 50 50 H 0.97001 * 119.99964 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.58904 * 246.20272 * 29 9 7 52 52 H 1.09011 * 109.58355 * 6.62400 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2306 5 7 1.7067 -0.2500 -2.4546 6 8 2.7296 -1.6965 -1.1193 7 6 2.0324 -0.7104 1.2304 8 8 1.2467 -1.2339 1.9916 9 7 3.3549 -0.7640 1.4849 10 6 4.3251 -0.2297 0.5196 11 6 5.3536 -1.3190 0.1998 12 6 5.9768 -1.8250 1.5029 13 6 4.8873 -2.4342 2.3885 14 1 4.3991 -3.2499 1.8554 15 6 5.5162 -2.9691 3.6766 16 1 5.9298 -2.1445 4.2572 17 6 6.6271 -3.9846 3.3359 18 6 6.4565 -5.0678 4.4336 19 6 4.9180 -5.0875 4.6145 20 7 4.5030 -3.6804 4.4698 21 6 3.3622 -3.1275 4.9876 22 1 2.4297 -3.6705 4.9412 23 6 3.4044 -1.8692 5.5723 24 7 2.2852 -1.2312 5.8423 25 14 5.0492 -1.0814 5.9760 26 1 5.5573 -0.3574 4.7831 27 1 4.8780 -0.1256 7.0994 28 1 6.0203 -2.1351 6.3661 29 6 3.8536 -1.3574 2.7330 30 1 -0.3633 0.5784 0.8494 31 1 -0.3634 0.4463 -0.9256 32 1 -0.3633 -1.0249 0.0763 33 1 3.1236 1.4448 0.1180 34 1 1.7762 1.9211 -0.9432 35 1 1.5835 1.9893 0.8250 36 1 1.1487 0.5385 -2.5435 37 1 2.0303 -0.7070 -3.2466 38 1 3.8080 0.0641 -0.3938 39 1 4.8287 0.6365 0.9490 40 1 4.8610 -2.1453 -0.3126 41 1 6.1332 -0.9067 -0.4406 42 1 6.7267 -2.5830 1.2765 43 1 6.4477 -0.9934 2.0270 44 1 6.4692 -4.4111 2.3454 45 1 7.6100 -3.5182 3.4038 46 1 6.9546 -4.7706 5.3565 47 1 6.8217 -6.0352 4.0890 48 1 4.6573 -5.4599 5.6051 49 1 4.4533 -5.7014 3.8431 50 1 2.3146 -0.3518 6.2505 51 1 4.3205 -0.5848 3.3439 52 1 3.0252 -1.8077 3.2801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963318157.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:45 Heat of formation + Delta-G solvation = -35.942945 kcal Electronic energy + Delta-G solvation = -33229.220316 eV Core-core repulsion = 29229.729595 eV Total energy + Delta-G solvation = -3999.490721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.00011 -38.98389 -37.96800 -36.35645 -34.82924 -33.34797 -32.75706 -32.20058 -30.79162 -29.83421 -27.66105 -26.71368 -25.43566 -24.37695 -23.82879 -22.17598 -21.62977 -20.21755 -19.86219 -19.46917 -18.74900 -17.67358 -16.74715 -16.62897 -16.01021 -15.61778 -15.23490 -14.97922 -14.60134 -14.50457 -14.25934 -13.57690 -13.54617 -13.41287 -13.23341 -12.98134 -12.73631 -12.53726 -12.46892 -12.27646 -12.20073 -12.15600 -11.90125 -11.79958 -11.33577 -11.25099 -11.03250 -10.93779 -10.64954 -10.48825 -10.42075 -10.36896 -10.22504 -9.90355 -9.87905 -9.79991 -9.76274 -9.53295 -9.32550 -9.04603 -8.24845 -7.82762 -6.58641 -5.87774 -3.36211 2.49907 2.94739 3.32067 3.46512 3.53708 3.56983 3.62690 4.51606 4.56177 4.67888 4.81696 4.94362 5.04373 5.15891 5.28464 5.33797 5.34525 5.47240 5.50595 5.53855 5.58292 5.66541 5.67563 5.73372 5.78019 5.86694 5.88234 5.98403 6.13238 6.17926 6.21698 6.22957 6.34672 6.38386 6.42382 6.45423 6.53096 6.54764 6.63832 6.74033 6.82816 6.89182 6.98042 7.10255 7.23587 7.33059 7.52310 8.10331 8.12482 8.17223 8.48077 8.84476 8.99226 9.74475 10.38985 11.25502 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.005052 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.094024 B = 5541.457454 C = 6344.845457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C -0.155 4.155 4 C 0.529 3.471 5 N -0.854 5.854 6 O -0.517 6.517 7 C 0.532 3.468 8 O -0.510 6.510 9 N -0.594 5.594 10 C 0.108 3.892 11 C -0.129 4.129 12 C -0.118 4.118 13 C -0.096 4.096 14 H 0.070 0.930 15 C 0.151 3.849 16 H 0.033 0.967 17 C -0.124 4.124 18 C -0.137 4.137 19 C 0.129 3.871 20 N -0.603 5.603 21 C -0.247 4.247 22 H 0.082 0.918 23 C 0.045 3.955 24 N -0.891 5.891 25 Si 0.879 3.121 26 H -0.279 1.279 27 H -0.304 1.304 28 H -0.272 1.272 29 C 0.102 3.898 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.400 0.600 37 H 0.402 0.598 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.048 0.952 49 H 0.024 0.976 50 H 0.263 0.737 51 H 0.052 0.948 52 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.531 5.868 -17.124 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.114 4.114 3 C -0.212 4.212 4 C 0.313 3.687 5 N -0.419 5.419 6 O -0.391 6.391 7 C 0.316 3.684 8 O -0.383 6.383 9 N -0.327 5.327 10 C -0.015 4.015 11 C -0.167 4.167 12 C -0.156 4.156 13 C -0.117 4.117 14 H 0.089 0.911 15 C 0.045 3.955 16 H 0.050 0.950 17 C -0.163 4.163 18 C -0.175 4.175 19 C 0.004 3.996 20 N -0.329 5.329 21 C -0.375 4.375 22 H 0.099 0.901 23 C -0.157 4.157 24 N -0.531 5.531 25 Si 0.710 3.290 26 H -0.207 1.207 27 H -0.233 1.233 28 H -0.198 1.198 29 C -0.017 4.017 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.229 0.771 37 H 0.233 0.767 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.066 0.934 49 H 0.042 0.958 50 H 0.073 0.927 51 H 0.070 0.930 52 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.354 5.126 -16.272 17.387 hybrid contribution 0.926 1.009 -0.311 1.404 sum 4.280 6.134 -16.584 18.192 Atomic orbital electron populations 1.21648 0.90047 1.04217 1.02327 1.21164 0.99535 0.97569 0.93106 1.22220 1.03275 0.92355 1.03372 1.20169 0.79523 0.84331 0.84694 1.43815 1.56330 1.33980 1.07784 1.90837 1.36415 1.25372 1.86490 1.19521 0.82702 0.80404 0.85746 1.90808 1.54531 1.44742 1.48268 1.48043 1.04648 1.59432 1.20550 1.21835 0.91266 0.95932 0.92495 1.21861 0.97518 0.99568 0.97728 1.21663 0.98213 1.00067 0.95685 1.21857 0.95377 0.98051 0.96440 0.91139 1.21259 0.89826 0.93887 0.90539 0.94984 1.22578 0.97917 0.97022 0.98734 1.22773 0.98401 0.97855 0.98517 1.21733 0.91167 0.88100 0.98570 1.44678 1.23581 1.05653 1.58987 1.18438 0.85730 1.01566 1.31782 0.90089 1.25544 0.95850 0.97871 0.96427 1.69817 1.25594 1.13650 1.44019 0.87078 0.86079 0.78683 0.77131 1.20662 1.23264 1.19758 1.22591 1.01288 0.94609 0.83243 0.90455 0.92142 0.90969 0.90319 0.91447 0.90449 0.77138 0.76733 0.90646 0.92714 0.90202 0.92247 0.92073 0.92794 0.91406 0.92198 0.91917 0.92022 0.93409 0.95781 0.92733 0.92960 0.83053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 7.78 37.16 0.29 -1.27 16 2 C -0.11 -1.50 0.60 -156.81 -0.09 -1.60 16 3 C -0.15 -1.64 8.09 37.16 0.30 -1.34 16 4 C 0.53 6.93 5.08 -10.98 -0.06 6.88 16 5 N -0.85 -6.53 8.59 31.22 0.27 -6.26 16 6 O -0.52 -8.92 13.62 5.56 0.08 -8.85 16 7 C 0.53 10.92 5.92 -10.98 -0.07 10.86 16 8 O -0.51 -12.98 15.32 5.56 0.09 -12.90 16 9 N -0.59 -12.03 2.84 -172.77 -0.49 -12.52 16 10 C 0.11 1.71 3.63 -3.71 -0.01 1.70 16 11 C -0.13 -2.00 5.89 -26.61 -0.16 -2.16 16 12 C -0.12 -2.03 4.90 -26.68 -0.13 -2.16 16 13 C -0.10 -2.05 1.96 -90.50 -0.18 -2.22 16 14 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 15 C 0.15 3.34 1.98 -66.95 -0.13 3.21 16 16 H 0.03 0.78 3.57 -51.93 -0.19 0.59 16 17 C -0.12 -2.22 5.31 -24.90 -0.13 -2.36 16 18 C -0.14 -2.41 7.09 -24.58 -0.17 -2.59 16 19 C 0.13 2.73 7.23 -2.53 -0.02 2.72 16 20 N -0.60 -15.00 2.59 -162.57 -0.42 -15.42 16 21 C -0.25 -7.11 8.28 -15.06 -0.12 -7.23 16 22 H 0.08 2.59 8.06 -52.48 -0.42 2.17 16 23 C 0.04 1.30 3.65 -17.43 -0.06 1.24 16 24 N -0.89 -27.46 13.97 55.49 0.78 -26.68 16 25 Si 0.88 22.86 23.20 -169.99 -3.94 18.92 16 26 H -0.28 -6.93 5.73 56.52 0.32 -6.61 16 27 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 28 H -0.27 -7.04 7.11 56.52 0.40 -6.64 16 29 C 0.10 2.43 4.10 -3.71 -0.02 2.41 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.49 7.45 -51.93 -0.39 0.11 16 32 H 0.07 1.06 7.92 -51.93 -0.41 0.65 16 33 H 0.08 0.87 4.65 -51.93 -0.24 0.63 16 34 H 0.07 0.46 7.39 -51.92 -0.38 0.07 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.40 1.86 7.54 -40.82 -0.31 1.56 16 37 H 0.40 2.55 8.93 -40.82 -0.36 2.19 16 38 H 0.08 1.04 3.26 -51.93 -0.17 0.87 16 39 H 0.05 0.80 7.97 -51.93 -0.41 0.39 16 40 H 0.08 1.39 6.74 -51.93 -0.35 1.04 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.94 6.77 -51.93 -0.35 0.59 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.13 7.36 -51.93 -0.38 0.75 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 51 H 0.05 1.31 5.34 -51.93 -0.28 1.03 16 52 H 0.15 4.31 3.85 -51.92 -0.20 4.11 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -36.22 368.09 -7.16 -43.38 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -8.29 Total: 8.70 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.77 Total: 6.09 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.13 Total: -60.89 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: 0.16 Total: -21.74 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -3.94 Total: 18.92 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.22 -7.16 -43.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963318157.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.437 kcal (2) G-P(sol) polarization free energy of solvation -36.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds