Wall clock time and date at job start Tue Mar 31 2020 19:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47124 * 2 1 4 4 C 1.50710 * 109.46943 * 240.00005 * 2 1 3 5 5 N 1.34774 * 119.99945 * 60.00071 * 4 2 1 6 6 O 1.21282 * 120.00034 * 239.99730 * 4 2 1 7 7 C 1.50700 * 109.47489 * 120.00187 * 2 1 3 8 8 O 1.21281 * 119.99642 * 3.97085 * 7 2 1 9 9 N 1.34779 * 119.99932 * 183.97269 * 7 2 1 10 10 C 1.46920 * 120.63149 * 355.06532 * 9 7 2 11 11 C 1.53193 * 108.77740 * 233.58625 * 10 9 7 12 12 C 1.53046 * 109.31284 * 305.36777 * 11 10 9 13 13 C 1.53044 * 109.53741 * 61.36214 * 12 11 10 14 14 H 1.08998 * 109.49732 * 58.58975 * 13 12 11 15 15 C 1.52999 * 109.49615 * 178.68352 * 13 12 11 16 16 H 1.09005 * 109.87064 * 64.87337 * 15 13 12 17 17 C 1.54324 * 109.88453 * 303.69740 * 15 13 12 18 18 C 1.55154 * 102.94269 * 218.38959 * 17 15 13 19 19 C 1.54915 * 101.58193 * 35.50146 * 18 17 15 20 20 N 1.47020 * 109.88342 * 185.88711 * 15 13 12 21 21 C 1.36933 * 125.64645 * 298.39994 * 20 15 13 22 22 H 1.08007 * 120.00184 * 138.07434 * 21 20 15 23 23 C 1.38813 * 119.99838 * 318.06453 * 21 20 15 24 24 N 1.31626 * 119.99784 * 167.28633 * 23 21 20 25 25 Si 1.86793 * 120.00343 * 347.28546 * 23 21 20 26 26 H 1.48507 * 109.47035 * 86.30022 * 25 23 21 27 27 H 1.48496 * 109.47715 * 206.30181 * 25 23 21 28 28 H 1.48501 * 109.47259 * 326.30752 * 25 23 21 29 29 C 1.46929 * 120.63052 * 175.04430 * 9 7 2 30 30 H 1.08998 * 109.47036 * 304.25161 * 1 2 3 31 31 H 1.08994 * 109.47516 * 64.25699 * 1 2 3 32 32 H 1.09007 * 109.46918 * 184.25565 * 1 2 3 33 33 H 1.09005 * 109.47440 * 173.40846 * 3 2 1 34 34 H 1.09009 * 109.47142 * 293.40150 * 3 2 1 35 35 H 1.08998 * 109.47410 * 53.40274 * 3 2 1 36 36 H 0.97008 * 119.99601 * 359.97438 * 5 4 2 37 37 H 0.96999 * 120.00003 * 179.97438 * 5 4 2 38 38 H 1.09000 * 109.58965 * 353.37719 * 10 9 7 39 39 H 1.09000 * 109.58715 * 113.65650 * 10 9 7 40 40 H 1.08999 * 109.49731 * 65.31626 * 11 10 9 41 41 H 1.08995 * 109.50285 * 185.38406 * 11 10 9 42 42 H 1.09002 * 109.46119 * 181.38285 * 12 11 10 43 43 H 1.08998 * 109.45616 * 301.35605 * 12 11 10 44 44 H 1.09000 * 110.71738 * 336.75591 * 17 15 13 45 45 H 1.09000 * 110.71921 * 100.02516 * 17 15 13 46 46 H 1.08997 * 111.00215 * 277.42509 * 18 17 15 47 47 H 1.09000 * 111.03805 * 153.58626 * 18 17 15 48 48 H 1.08994 * 110.36714 * 204.15335 * 19 18 17 49 49 H 1.08996 * 110.36364 * 81.82833 * 19 18 17 50 50 H 0.97001 * 119.99964 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.58904 * 246.20272 * 29 9 7 52 52 H 1.09011 * 109.58355 * 6.62400 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2306 5 7 1.7067 -0.2500 -2.4546 6 8 2.7296 -1.6965 -1.1193 7 6 2.0324 -0.7104 1.2304 8 8 1.2467 -1.2339 1.9916 9 7 3.3549 -0.7640 1.4849 10 6 4.3251 -0.2297 0.5196 11 6 5.3536 -1.3190 0.1998 12 6 5.9768 -1.8250 1.5029 13 6 4.8873 -2.4342 2.3885 14 1 4.3991 -3.2499 1.8554 15 6 5.5162 -2.9691 3.6766 16 1 5.9298 -2.1445 4.2572 17 6 6.6271 -3.9846 3.3359 18 6 6.4565 -5.0678 4.4336 19 6 4.9180 -5.0875 4.6145 20 7 4.5030 -3.6804 4.4698 21 6 3.3622 -3.1275 4.9876 22 1 2.4297 -3.6705 4.9412 23 6 3.4044 -1.8692 5.5723 24 7 2.2852 -1.2312 5.8423 25 14 5.0492 -1.0814 5.9760 26 1 5.5573 -0.3574 4.7831 27 1 4.8780 -0.1256 7.0994 28 1 6.0203 -2.1351 6.3661 29 6 3.8536 -1.3574 2.7330 30 1 -0.3633 0.5784 0.8494 31 1 -0.3634 0.4463 -0.9256 32 1 -0.3633 -1.0249 0.0763 33 1 3.1236 1.4448 0.1180 34 1 1.7762 1.9211 -0.9432 35 1 1.5835 1.9893 0.8250 36 1 1.1487 0.5385 -2.5435 37 1 2.0303 -0.7070 -3.2466 38 1 3.8080 0.0641 -0.3938 39 1 4.8287 0.6365 0.9490 40 1 4.8610 -2.1453 -0.3126 41 1 6.1332 -0.9067 -0.4406 42 1 6.7267 -2.5830 1.2765 43 1 6.4477 -0.9934 2.0270 44 1 6.4692 -4.4111 2.3454 45 1 7.6100 -3.5182 3.4038 46 1 6.9546 -4.7706 5.3565 47 1 6.8217 -6.0352 4.0890 48 1 4.6573 -5.4599 5.6051 49 1 4.4533 -5.7014 3.8431 50 1 2.3146 -0.3518 6.2505 51 1 4.3205 -0.5848 3.3439 52 1 3.0252 -1.8077 3.2801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963318157.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:44 Heat of formation + Delta-G solvation = -66.206252 kcal Electronic energy + Delta-G solvation = -33230.532631 eV Core-core repulsion = 29229.729595 eV Total energy + Delta-G solvation = -4000.803037 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.28897 -40.47677 -39.48955 -37.93030 -36.01000 -34.82527 -34.46598 -33.57591 -32.35536 -31.73089 -28.92830 -28.03511 -26.86309 -26.35890 -24.99759 -23.72820 -22.97104 -21.72604 -21.57360 -21.06245 -19.94913 -18.98506 -18.59331 -17.78452 -17.44534 -17.32300 -16.60407 -16.54272 -15.95178 -15.92666 -15.57731 -15.38041 -15.21827 -14.89613 -14.82537 -14.50059 -14.31113 -13.79243 -13.75916 -13.67880 -13.61452 -13.40443 -13.21632 -13.03443 -12.97201 -12.86721 -12.81826 -12.44518 -12.31946 -12.10182 -12.00903 -11.87202 -11.74043 -11.69369 -11.42792 -11.32955 -11.11053 -10.96123 -10.64969 -10.61426 -10.40487 -9.46542 -8.64374 -8.15991 -5.62568 1.20844 1.31185 1.43412 1.45487 1.58869 2.08991 2.37156 2.55558 3.07542 3.28217 3.38274 3.73159 3.77309 3.81570 3.86230 3.96357 4.01434 4.05793 4.12144 4.20322 4.33208 4.40590 4.48518 4.54024 4.56668 4.58002 4.65572 4.70060 4.73692 4.76946 4.85689 4.91968 4.99413 5.04007 5.04805 5.11391 5.13435 5.14837 5.19959 5.26545 5.34680 5.46143 5.57219 5.60579 5.67795 5.90415 5.95736 6.18485 6.36455 6.58059 6.88366 7.26988 7.29897 7.53604 8.23445 9.02186 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.005052 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.094024 B = 5541.457454 C = 6344.845457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.101 4.101 3 C -0.152 4.152 4 C 0.531 3.469 5 N -0.819 5.819 6 O -0.564 6.564 7 C 0.513 3.487 8 O -0.582 6.582 9 N -0.598 5.598 10 C 0.101 3.899 11 C -0.123 4.123 12 C -0.112 4.112 13 C -0.088 4.088 14 H 0.040 0.960 15 C 0.141 3.859 16 H 0.020 0.980 17 C -0.115 4.115 18 C -0.122 4.122 19 C 0.118 3.882 20 N -0.622 5.622 21 C -0.238 4.238 22 H 0.022 0.978 23 C 0.002 3.998 24 N -0.940 5.940 25 Si 0.941 3.059 26 H -0.259 1.259 27 H -0.310 1.310 28 H -0.262 1.262 29 C 0.109 3.891 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.420 0.580 37 H 0.415 0.585 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.064 0.936 47 H 0.101 0.899 48 H 0.038 0.962 49 H 0.022 0.978 50 H 0.260 0.740 51 H 0.035 0.965 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.330 7.576 -20.948 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.108 4.108 3 C -0.209 4.209 4 C 0.315 3.685 5 N -0.386 5.386 6 O -0.443 6.443 7 C 0.300 3.700 8 O -0.461 6.461 9 N -0.329 5.329 10 C -0.021 4.021 11 C -0.161 4.161 12 C -0.150 4.150 13 C -0.109 4.109 14 H 0.058 0.942 15 C 0.035 3.965 16 H 0.038 0.962 17 C -0.153 4.153 18 C -0.160 4.160 19 C -0.006 4.006 20 N -0.348 5.348 21 C -0.368 4.368 22 H 0.040 0.960 23 C -0.195 4.195 24 N -0.583 5.583 25 Si 0.770 3.230 26 H -0.186 1.186 27 H -0.238 1.238 28 H -0.187 1.187 29 C -0.013 4.013 30 H 0.083 0.917 31 H 0.134 0.866 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.252 0.748 37 H 0.248 0.752 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.121 0.879 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.112 0.888 46 H 0.083 0.917 47 H 0.120 0.880 48 H 0.056 0.944 49 H 0.040 0.960 50 H 0.069 0.931 51 H 0.053 0.947 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.189 6.859 -20.192 22.504 hybrid contribution -0.433 0.400 0.805 0.998 sum 6.756 7.259 -19.387 21.776 Atomic orbital electron populations 1.21687 0.89170 1.02519 1.04649 1.21138 1.00170 0.98970 0.90476 1.22292 1.02935 0.89691 1.06005 1.19939 0.79255 0.83691 0.85650 1.43473 1.54978 1.33977 1.06130 1.90837 1.38927 1.27329 1.87174 1.20823 0.82299 0.79668 0.87167 1.90768 1.56238 1.47840 1.51248 1.48159 1.05723 1.58873 1.20158 1.22209 0.90817 0.96583 0.92455 1.21842 0.98162 0.98837 0.97263 1.21646 0.97040 1.00848 0.95451 1.21729 0.95987 0.96401 0.96829 0.94177 1.21487 0.90301 0.94679 0.90051 0.96233 1.22612 0.97502 0.95763 0.99437 1.22713 0.94475 0.99959 0.98832 1.21907 0.94711 0.85963 0.98064 1.44808 1.22897 1.07400 1.59694 1.18022 0.85534 1.01462 1.31735 0.96018 1.25995 0.99053 0.98071 0.96417 1.69987 1.28191 1.14126 1.46007 0.86067 0.81867 0.77913 0.77134 1.18584 1.23836 1.18696 1.22046 0.99858 0.94679 0.84730 0.91714 0.86628 0.94237 0.90492 0.86250 0.91148 0.74789 0.75205 0.88166 0.90848 0.92256 0.87933 0.89346 0.91991 0.89891 0.88829 0.91687 0.88030 0.94365 0.95960 0.93062 0.94707 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 7.78 71.98 0.56 -2.47 16 2 C -0.10 -2.77 0.60 -53.67 -0.03 -2.80 16 3 C -0.15 -2.78 8.09 71.98 0.58 -2.20 16 4 C 0.53 12.85 5.08 87.66 0.45 13.29 16 5 N -0.82 -9.09 8.59 -173.53 -1.49 -10.58 16 6 O -0.56 -19.09 13.62 -3.03 -0.04 -19.13 16 7 C 0.51 22.30 5.92 87.66 0.52 22.82 16 8 O -0.58 -32.82 15.32 -3.03 -0.05 -32.86 16 9 N -0.60 -24.95 2.84 -818.90 -2.33 -27.28 16 10 C 0.10 2.99 3.63 86.36 0.31 3.31 16 11 C -0.12 -3.46 5.89 30.67 0.18 -3.28 16 12 C -0.11 -3.51 4.90 30.62 0.15 -3.36 16 13 C -0.09 -3.80 1.96 -10.72 -0.02 -3.82 16 14 H 0.04 1.93 8.14 -2.39 -0.02 1.92 16 15 C 0.14 6.12 1.98 45.34 0.09 6.21 16 16 H 0.02 0.93 3.57 -2.38 -0.01 0.92 16 17 C -0.12 -3.71 5.31 31.78 0.17 -3.54 16 18 C -0.12 -3.91 7.09 31.99 0.23 -3.68 16 19 C 0.12 5.06 7.23 86.86 0.63 5.68 16 20 N -0.62 -32.18 2.59 -668.26 -1.73 -33.91 16 21 C -0.24 -14.86 8.28 84.03 0.70 -14.16 16 22 H 0.02 1.59 8.06 -2.91 -0.02 1.56 16 23 C 0.00 0.14 3.65 84.86 0.31 0.45 16 24 N -0.94 -62.75 13.97 21.65 0.30 -62.45 16 25 Si 0.94 48.88 23.20 68.60 1.59 50.48 16 26 H -0.26 -12.51 5.73 99.48 0.57 -11.94 16 27 H -0.31 -16.19 7.11 99.48 0.71 -15.48 16 28 H -0.26 -13.06 7.11 99.48 0.71 -12.36 16 29 C 0.11 5.42 4.10 86.36 0.35 5.78 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.12 1.49 7.45 -2.39 -0.02 1.47 16 32 H 0.04 1.22 7.92 -2.38 -0.02 1.20 16 33 H 0.08 1.46 4.65 -2.38 -0.01 1.45 16 34 H 0.12 0.94 7.39 -2.38 -0.02 0.92 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.42 1.55 7.54 -92.70 -0.70 0.85 16 37 H 0.41 3.49 8.93 -92.71 -0.83 2.66 16 38 H 0.10 2.47 3.26 -2.39 -0.01 2.46 16 39 H 0.07 1.92 7.97 -2.39 -0.02 1.90 16 40 H 0.06 1.96 6.74 -2.39 -0.02 1.95 16 41 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.09 2.31 6.77 -2.39 -0.02 2.30 16 43 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 2.44 7.36 -2.39 -0.02 2.42 16 45 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 48 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.26 16.52 8.31 -92.71 -0.77 15.75 16 51 H 0.03 1.80 5.34 -2.39 -0.01 1.79 16 52 H 0.10 5.94 3.85 -2.38 -0.01 5.93 16 Total: -1.00 -93.96 368.09 0.72 -93.24 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.70 Total: 24.29 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 5.17 Total: 18.22 kcal Atomic # 7 Polarization: -128.98 SS G_CDS: -5.25 Total: -134.23 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -0.09 Total: -52.00 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 1.59 Total: 50.48 kcal Total: -93.96 0.72 -93.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963318157.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.031 kcal (2) G-P(sol) polarization free energy of solvation -93.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds