Wall clock time and date at job start Tue Mar 31 2020 19:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53009 * 109.47378 * 2 1 4 4 C 1.50704 * 109.46979 * 240.00275 * 2 1 3 5 5 N 1.34778 * 120.00144 * 59.99917 * 4 2 1 6 6 O 1.21283 * 120.00062 * 239.99962 * 4 2 1 7 7 C 1.50694 * 109.47379 * 120.00138 * 2 1 3 8 8 O 1.21283 * 120.00246 * 236.70467 * 7 2 1 9 9 N 1.34778 * 120.00102 * 56.70174 * 7 2 1 10 10 C 1.46926 * 120.62886 * 5.04289 * 9 7 2 11 11 C 1.53194 * 108.77336 * 126.36931 * 10 9 7 12 12 C 1.53041 * 109.31109 * 54.63578 * 11 10 9 13 13 C 1.53038 * 109.54199 * 298.63323 * 12 11 10 14 14 H 1.09004 * 109.51901 * 301.40413 * 13 12 11 15 15 C 1.52996 * 109.49973 * 181.31688 * 13 12 11 16 16 H 1.09001 * 109.87494 * 185.45968 * 15 13 12 17 17 C 1.54316 * 110.01198 * 306.56146 * 15 13 12 18 18 C 1.55448 * 102.96925 * 141.68158 * 17 15 13 19 19 C 1.54900 * 101.45131 * 324.51654 * 18 17 15 20 20 N 1.47028 * 109.88000 * 64.44539 * 15 13 12 21 21 C 1.36941 * 125.64783 * 61.50887 * 20 15 13 22 22 H 1.08000 * 119.99880 * 16.48377 * 21 20 15 23 23 C 1.38813 * 119.99694 * 196.48300 * 21 20 15 24 24 N 1.31615 * 120.00031 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99580 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47096 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46880 * 120.00165 * 25 23 21 28 28 H 1.48497 * 109.47214 * 240.00091 * 25 23 21 29 29 C 1.46925 * 120.63091 * 185.02317 * 9 7 2 30 30 H 1.09003 * 109.46970 * 306.58698 * 1 2 3 31 31 H 1.09004 * 109.47548 * 66.58296 * 1 2 3 32 32 H 1.08995 * 109.47449 * 186.58643 * 1 2 3 33 33 H 1.08996 * 109.46850 * 184.53056 * 3 2 1 34 34 H 1.09000 * 109.46888 * 304.53160 * 3 2 1 35 35 H 1.08999 * 109.46732 * 64.52828 * 3 2 1 36 36 H 0.96999 * 119.99577 * 0.02562 * 5 4 2 37 37 H 0.96999 * 119.99880 * 180.02562 * 5 4 2 38 38 H 1.08997 * 109.58474 * 246.15815 * 10 9 7 39 39 H 1.08997 * 109.58505 * 6.44160 * 10 9 7 40 40 H 1.09008 * 109.49494 * 174.58509 * 11 10 9 41 41 H 1.08997 * 109.49760 * 294.65192 * 11 10 9 42 42 H 1.08999 * 109.45537 * 178.60921 * 12 11 10 43 43 H 1.09000 * 109.46000 * 58.65717 * 12 11 10 44 44 H 1.09001 * 110.71793 * 260.04495 * 17 15 13 45 45 H 1.08995 * 110.72237 * 23.31642 * 17 15 13 46 46 H 1.09002 * 111.11648 * 206.46016 * 18 17 15 47 47 H 1.09007 * 111.01031 * 82.52666 * 18 17 15 48 48 H 1.09003 * 110.36916 * 278.10725 * 19 18 17 49 49 H 1.09000 * 110.36869 * 155.89640 * 19 18 17 50 50 H 0.96999 * 119.99620 * 179.97438 * 24 23 21 51 51 H 1.08997 * 109.58779 * 113.84490 * 29 9 7 52 52 H 1.08997 * 109.58928 * 353.41583 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0322 -0.7104 -1.2305 5 7 1.7066 -0.2499 -2.4546 6 8 2.7295 -1.6965 -1.1193 7 6 2.0323 -0.7104 1.2304 8 8 2.7781 -0.1399 1.9980 9 7 1.6528 -1.9798 1.4778 10 6 0.8401 -2.7214 0.5040 11 6 1.5406 -4.0457 0.1841 12 6 1.8088 -4.8039 1.4862 13 6 2.7313 -3.9735 2.3814 14 1 3.6651 -3.7732 1.8559 15 6 3.0252 -4.7464 3.6686 16 1 3.6017 -4.1229 4.3519 17 6 1.7039 -5.1772 4.3393 18 6 2.0340 -6.5963 4.8810 19 6 2.9751 -7.1362 3.7754 20 7 3.7756 -5.9715 3.3559 21 6 5.0133 -6.0222 2.7721 22 1 5.6329 -5.1381 2.7422 23 6 5.4715 -7.2100 2.2188 24 7 4.7162 -8.2873 2.2548 25 14 7.1596 -7.2790 1.4218 26 1 7.8039 -5.9440 1.5108 27 1 7.9990 -8.2811 2.1263 28 1 7.0181 -7.6668 -0.0046 29 6 2.0444 -2.6483 2.7262 30 1 -0.3633 0.6126 0.8252 31 1 -0.3634 0.4084 -0.9430 32 1 -0.3634 -1.0208 0.1179 33 1 3.1269 1.4435 -0.0812 34 1 1.6119 1.9793 -0.8466 35 1 1.7444 1.9324 0.9278 36 1 1.1493 0.5390 -2.5435 37 1 2.0296 -0.7074 -3.2466 38 1 -0.1444 -2.9216 0.9269 39 1 0.7337 -2.1325 -0.4069 40 1 0.9024 -4.6478 -0.4627 41 1 2.4851 -3.8448 -0.3216 42 1 2.2850 -5.7577 1.2594 43 1 0.8659 -4.9828 2.0030 44 1 1.4484 -4.5025 5.1564 45 1 0.8968 -5.2218 3.6081 46 1 1.1337 -7.2058 4.9597 47 1 2.5499 -6.5386 5.8395 48 1 2.3942 -7.5194 2.9364 49 1 3.6220 -7.9168 4.1758 50 1 5.0363 -9.1171 1.8678 51 1 1.1581 -2.8426 3.3302 52 1 2.7346 -2.0123 3.2804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963318158.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:48 Heat of formation + Delta-G solvation = -43.563387 kcal Electronic energy + Delta-G solvation = -32342.226507 eV Core-core repulsion = 28342.405339 eV Total energy + Delta-G solvation = -3999.821168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.30667 -39.11298 -38.15097 -36.35884 -35.09279 -33.52821 -32.64019 -32.03537 -31.04977 -29.23521 -27.79849 -26.53474 -25.71449 -24.43695 -24.02191 -22.42194 -21.84078 -20.70608 -19.91765 -19.01755 -18.30697 -17.92122 -16.94363 -16.61553 -16.27776 -15.65576 -15.10468 -14.99924 -14.83118 -14.50296 -14.36568 -13.93987 -13.77923 -13.74354 -13.20767 -13.01192 -12.80621 -12.65599 -12.52955 -12.47918 -12.17284 -12.06014 -11.91757 -11.76354 -11.49819 -11.36691 -10.95270 -10.78284 -10.73530 -10.46385 -10.27305 -10.09192 -10.05424 -9.97963 -9.90582 -9.82433 -9.73124 -9.57552 -9.44755 -9.30312 -8.47323 -8.28650 -6.63944 -5.66085 -2.99902 2.33397 2.54834 3.12431 3.35221 3.45797 3.52667 3.55317 4.18429 4.44295 4.51598 4.58310 4.68727 5.04377 5.11106 5.23568 5.29214 5.34745 5.37423 5.43892 5.45481 5.53213 5.57313 5.65320 5.71825 5.82438 5.87169 5.90530 5.91517 5.97290 6.03863 6.12311 6.21379 6.37808 6.41084 6.47637 6.49157 6.64794 6.68314 6.77646 6.83248 6.91613 6.97363 7.08708 7.23136 7.27480 7.60468 7.63203 7.74097 7.90476 7.99104 8.28711 8.39486 9.31264 9.92129 10.61965 11.46794 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013882 B = 0.003898 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.445089 B = 7182.367287 C = 8115.632740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.106 4.106 3 C -0.125 4.125 4 C 0.524 3.476 5 N -0.852 5.852 6 O -0.510 6.510 7 C 0.539 3.461 8 O -0.540 6.540 9 N -0.589 5.589 10 C 0.112 3.888 11 C -0.132 4.132 12 C -0.104 4.104 13 C -0.103 4.103 14 H 0.075 0.925 15 C 0.167 3.833 16 H 0.032 0.968 17 C -0.132 4.132 18 C -0.149 4.149 19 C 0.176 3.824 20 N -0.590 5.590 21 C -0.220 4.220 22 H 0.072 0.928 23 C -0.003 4.003 24 N -0.917 5.917 25 Si 0.904 3.096 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.116 3.884 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.400 0.600 37 H 0.404 0.596 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.025 0.975 49 H 0.064 0.936 50 H 0.250 0.750 51 H 0.064 0.936 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.979 16.977 -7.102 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.112 4.112 3 C -0.182 4.182 4 C 0.308 3.692 5 N -0.418 5.418 6 O -0.384 6.384 7 C 0.325 3.675 8 O -0.417 6.417 9 N -0.320 5.320 10 C -0.011 4.011 11 C -0.170 4.170 12 C -0.141 4.141 13 C -0.124 4.124 14 H 0.093 0.907 15 C 0.059 3.941 16 H 0.049 0.951 17 C -0.169 4.169 18 C -0.188 4.188 19 C 0.051 3.949 20 N -0.314 5.314 21 C -0.349 4.349 22 H 0.090 0.910 23 C -0.199 4.199 24 N -0.564 5.564 25 Si 0.735 3.265 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.218 1.218 29 C -0.006 4.006 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.228 0.772 37 H 0.236 0.764 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.043 0.957 49 H 0.082 0.918 50 H 0.061 0.939 51 H 0.082 0.918 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.982 16.459 -6.502 22.553 hybrid contribution 0.725 0.084 -1.111 1.330 sum -13.257 16.542 -7.613 22.524 Atomic orbital electron populations 1.22207 0.90690 1.04685 1.03629 1.21117 0.98855 0.98363 0.92895 1.21645 1.02393 0.91114 1.03083 1.20102 0.80245 0.84159 0.84737 1.43792 1.56283 1.33846 1.07836 1.90916 1.36155 1.24993 1.86364 1.19618 0.80321 0.81702 0.85866 1.90681 1.35500 1.66365 1.49193 1.47906 1.52071 1.11830 1.20163 1.21939 0.93258 0.94199 0.91703 1.21921 1.01759 0.94465 0.98898 1.21504 0.98669 0.99970 0.93982 1.21927 0.98853 0.92629 0.98991 0.90677 1.20888 0.91123 0.89540 0.92532 0.95075 1.22781 0.97912 0.97148 0.99105 1.23046 0.99663 0.96071 1.00006 1.21352 0.91345 0.90155 0.92078 1.44464 1.16490 0.99569 1.70849 1.18992 0.90530 0.96551 1.28840 0.90980 1.24858 0.98441 0.96505 1.00123 1.69945 1.36264 1.00407 1.49824 0.86158 0.83940 0.77403 0.79047 1.20469 1.21891 1.21806 1.21809 0.99532 0.94620 0.84614 0.90550 0.91110 0.90154 0.91304 0.91715 0.90436 0.77175 0.76410 0.92221 0.90549 0.92072 0.90144 0.89839 0.92910 0.92728 0.91245 0.92644 0.92583 0.95652 0.91804 0.93942 0.91822 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.09 37.15 0.30 -0.81 16 2 C -0.11 -1.13 0.60 -156.81 -0.09 -1.23 16 3 C -0.12 -1.13 7.65 37.16 0.28 -0.84 16 4 C 0.52 5.97 5.06 -10.98 -0.06 5.91 16 5 N -0.85 -5.49 8.63 31.22 0.27 -5.22 16 6 O -0.51 -8.37 13.48 5.55 0.07 -8.30 16 7 C 0.54 8.46 5.93 -10.99 -0.07 8.39 16 8 O -0.54 -10.27 15.38 5.55 0.09 -10.18 16 9 N -0.59 -9.14 2.84 -172.77 -0.49 -9.63 16 10 C 0.11 1.49 3.63 -3.71 -0.01 1.48 16 11 C -0.13 -2.15 5.87 -26.61 -0.16 -2.31 16 12 C -0.10 -1.92 4.68 -26.69 -0.13 -2.05 16 13 C -0.10 -2.01 2.14 -90.50 -0.19 -2.21 16 14 H 0.07 1.78 7.86 -51.93 -0.41 1.37 16 15 C 0.17 3.51 2.88 -66.96 -0.19 3.32 16 16 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 17 C -0.13 -2.32 5.31 -24.74 -0.13 -2.45 16 18 C -0.15 -2.85 7.11 -24.43 -0.17 -3.02 16 19 C 0.18 4.25 5.38 -2.54 -0.01 4.24 16 20 N -0.59 -14.96 2.56 -162.58 -0.42 -15.37 16 21 C -0.22 -6.24 9.71 -15.06 -0.15 -6.38 16 22 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16 23 C 0.00 -0.08 5.47 -17.43 -0.10 -0.17 16 24 N -0.92 -27.10 10.65 55.49 0.59 -26.51 16 25 Si 0.90 22.95 29.55 -169.99 -5.02 17.92 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 C 0.12 1.96 5.63 -3.71 -0.02 1.94 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.29 7.39 -51.93 -0.38 -0.09 16 32 H 0.08 0.63 4.74 -51.93 -0.25 0.38 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.34 7.69 -51.93 -0.40 -0.06 16 35 H 0.08 0.72 8.02 -51.93 -0.42 0.31 16 36 H 0.40 1.25 7.68 -40.82 -0.31 0.94 16 37 H 0.40 2.33 8.93 -40.82 -0.36 1.97 16 38 H 0.06 0.68 7.98 -51.93 -0.41 0.26 16 39 H 0.08 0.91 3.24 -51.93 -0.17 0.74 16 40 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 41 H 0.08 1.56 6.70 -51.93 -0.35 1.21 16 42 H 0.08 1.91 7.72 -51.93 -0.40 1.50 16 43 H 0.05 0.89 5.88 -51.93 -0.31 0.58 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 1.15 5.39 -51.93 -0.28 0.87 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.03 0.66 8.02 -51.93 -0.42 0.25 16 49 H 0.06 1.74 7.06 -51.93 -0.37 1.37 16 50 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 51 H 0.06 0.95 7.32 -51.93 -0.38 0.57 16 52 H 0.09 1.58 7.00 -51.93 -0.36 1.22 16 LS Contribution 381.32 15.07 5.75 5.75 Total: -1.00 -35.23 381.32 -8.54 -43.77 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -8.48 Total: 3.96 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -0.89 Total: 3.81 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.05 Total: -56.73 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.16 Total: -18.48 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.23 -8.54 -43.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963318158.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.206 kcal (2) G-P(sol) polarization free energy of solvation -35.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds