Wall clock time and date at job start Tue Mar 31 2020 19:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47567 * 2 1 4 4 C 1.50699 * 109.47147 * 239.99885 * 2 1 3 5 5 N 1.34779 * 119.99705 * 60.00511 * 4 2 1 6 6 O 1.21277 * 120.00635 * 240.00022 * 4 2 1 7 7 C 1.50705 * 109.47294 * 120.00197 * 2 1 3 8 8 O 1.21274 * 119.99811 * 236.97442 * 7 2 1 9 9 N 1.34777 * 119.99806 * 56.97108 * 7 2 1 10 10 C 1.46927 * 120.62970 * 5.15134 * 9 7 2 11 11 C 1.53201 * 108.77217 * 126.41456 * 10 9 7 12 12 C 1.53039 * 109.30990 * 54.63585 * 11 10 9 13 13 C 1.53042 * 109.53995 * 298.63406 * 12 11 10 14 14 H 1.09001 * 109.49229 * 301.38145 * 13 12 11 15 15 C 1.52998 * 109.49539 * 181.31856 * 13 12 11 16 16 H 1.08998 * 109.99723 * 63.37809 * 15 13 12 17 17 C 1.54329 * 109.88460 * 302.27639 * 15 13 12 18 18 C 1.55149 * 102.94383 * 218.39276 * 17 15 13 19 19 C 1.54918 * 101.58329 * 35.50306 * 18 17 15 20 20 N 1.47031 * 109.87829 * 184.47126 * 15 13 12 21 21 C 1.36934 * 125.64783 * 298.32072 * 20 15 13 22 22 H 1.08004 * 120.00092 * 346.46631 * 21 20 15 23 23 C 1.38812 * 119.99900 * 166.46448 * 21 20 15 24 24 N 1.31612 * 119.99788 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 119.99920 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47668 * 90.00026 * 25 23 21 27 27 H 1.48502 * 109.47132 * 210.00087 * 25 23 21 28 28 H 1.48501 * 109.47156 * 329.99830 * 25 23 21 29 29 C 1.46920 * 120.63088 * 185.18225 * 9 7 2 30 30 H 1.08998 * 109.46739 * 306.14844 * 1 2 3 31 31 H 1.09003 * 109.46788 * 66.13624 * 1 2 3 32 32 H 1.08993 * 109.47333 * 186.14058 * 1 2 3 33 33 H 1.09002 * 109.47496 * 184.58014 * 3 2 1 34 34 H 1.08998 * 109.47011 * 304.58099 * 3 2 1 35 35 H 1.09000 * 109.47104 * 64.57825 * 3 2 1 36 36 H 0.97002 * 120.00348 * 359.97438 * 5 4 2 37 37 H 0.97004 * 120.00251 * 180.02562 * 5 4 2 38 38 H 1.08999 * 109.59247 * 6.63239 * 10 9 7 39 39 H 1.08998 * 109.58938 * 246.19899 * 10 9 7 40 40 H 1.08993 * 109.49495 * 294.68497 * 11 10 9 41 41 H 1.09001 * 109.51983 * 174.60282 * 11 10 9 42 42 H 1.09001 * 109.45763 * 178.61100 * 12 11 10 43 43 H 1.09001 * 109.45181 * 58.64850 * 12 11 10 44 44 H 1.08998 * 110.71915 * 336.76060 * 17 15 13 45 45 H 1.08997 * 110.71373 * 100.02903 * 17 15 13 46 46 H 1.09004 * 111.00580 * 277.42751 * 18 17 15 47 47 H 1.08997 * 111.00763 * 153.57284 * 18 17 15 48 48 H 1.08994 * 110.36738 * 204.15181 * 19 18 17 49 49 H 1.08993 * 110.45841 * 81.87670 * 19 18 17 50 50 H 0.97008 * 120.00341 * 180.02562 * 24 23 21 51 51 H 1.08995 * 109.59407 * 113.79680 * 29 9 7 52 52 H 1.09009 * 109.58528 * 353.36662 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7068 -0.2499 -2.4545 6 8 2.7296 -1.6965 -1.1193 7 6 2.0324 -0.7105 1.2305 8 8 2.7742 -0.1383 2.0006 9 7 1.6572 -1.9817 1.4750 10 6 0.8515 -2.7256 0.4972 11 6 1.5583 -4.0472 0.1795 12 6 1.8234 -4.8052 1.4823 13 6 2.7389 -3.9719 2.3821 14 1 3.6743 -3.7685 1.8606 15 6 3.0299 -4.7447 3.6701 16 1 3.5741 -5.6607 3.4403 17 6 1.7069 -5.0860 4.3877 18 6 2.0647 -4.8956 5.8853 19 6 3.0440 -3.6969 5.8212 20 7 3.8206 -3.9097 4.5863 21 6 5.0715 -3.4127 4.3345 22 1 5.6478 -3.7955 3.5052 23 6 5.5988 -2.4169 5.1452 24 7 4.8966 -1.9509 6.1561 25 14 7.3048 -1.7385 4.8014 26 1 7.2007 -0.5832 3.8741 27 1 7.9277 -1.2963 6.0749 28 1 8.1427 -2.7965 4.1818 29 6 2.0455 -2.6495 2.7246 30 1 -0.3633 0.6062 0.8298 31 1 -0.3633 0.4158 -0.9398 32 1 -0.3633 -1.0217 0.1099 33 1 3.1270 1.4435 -0.0821 34 1 1.6113 1.9794 -0.8461 35 1 1.7453 1.9321 0.9282 36 1 1.1488 0.5386 -2.5436 37 1 2.0298 -0.7073 -3.2466 38 1 0.7490 -2.1377 -0.4149 39 1 -0.1341 -2.9297 0.9155 40 1 2.5044 -3.8424 -0.3213 41 1 0.9257 -4.6514 -0.4708 42 1 2.3041 -5.7572 1.2571 43 1 0.8788 -4.9877 1.9947 44 1 0.9173 -4.3966 4.0891 45 1 1.4155 -6.1173 4.1889 46 1 2.5577 -5.7819 6.2850 47 1 1.1794 -4.6458 6.4699 48 1 3.7034 -3.6990 6.6891 49 1 2.4936 -2.7578 5.7661 50 1 5.2649 -1.2547 6.7225 51 1 1.1573 -2.8474 3.3246 52 1 2.7310 -2.0113 3.2823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963318160.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:51 Heat of formation + Delta-G solvation = -70.493826 kcal Electronic energy + Delta-G solvation = -32816.583461 eV Core-core repulsion = 28815.594501 eV Total energy + Delta-G solvation = -4000.988960 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.33597 -40.43698 -39.47686 -37.85104 -36.02090 -34.81667 -34.21730 -33.52850 -32.24946 -31.15511 -28.77578 -27.94042 -26.87002 -26.49528 -24.94491 -24.00886 -22.84165 -22.14277 -21.55339 -20.10845 -19.82065 -18.93658 -18.61297 -17.81498 -17.42423 -17.03922 -16.61398 -16.40947 -15.99795 -15.82309 -15.71652 -15.64343 -15.14257 -14.84435 -14.43538 -14.28999 -13.97334 -13.84179 -13.73713 -13.61855 -13.41547 -13.25924 -13.11978 -13.07631 -12.94670 -12.88980 -12.75238 -12.65697 -12.29264 -12.08191 -11.96304 -11.74774 -11.67357 -11.50939 -11.34789 -11.16181 -11.11075 -10.97265 -10.73853 -10.65836 -10.64128 -9.51242 -8.75891 -7.87563 -5.20003 1.31669 1.38758 1.41990 1.42715 1.53415 2.03943 2.45303 2.53951 3.24824 3.32147 3.63635 3.73519 3.77159 3.89108 3.91640 3.97116 4.13425 4.15652 4.19272 4.30324 4.35365 4.39921 4.53476 4.59436 4.60194 4.67711 4.70851 4.77235 4.79371 4.85784 4.91946 4.97205 5.04211 5.08354 5.13443 5.18523 5.19136 5.23176 5.36490 5.38338 5.46532 5.58426 5.61677 5.66032 5.69966 5.82131 5.89517 6.26623 6.35741 6.49710 7.12942 7.19239 7.28268 7.82413 8.47253 9.23227 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011600 B = 0.004881 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.264548 B = 5735.027130 C = 6985.056072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.124 4.124 4 C 0.528 3.472 5 N -0.820 5.820 6 O -0.567 6.567 7 C 0.515 3.485 8 O -0.592 6.592 9 N -0.595 5.595 10 C 0.106 3.894 11 C -0.127 4.127 12 C -0.104 4.104 13 C -0.092 4.092 14 H 0.017 0.983 15 C 0.156 3.844 16 H 0.031 0.969 17 C -0.110 4.110 18 C -0.135 4.135 19 C 0.178 3.822 20 N -0.611 5.611 21 C -0.224 4.224 22 H 0.061 0.939 23 C -0.057 4.057 24 N -0.941 5.941 25 Si 0.957 3.043 26 H -0.303 1.303 27 H -0.284 1.284 28 H -0.268 1.268 29 C 0.141 3.859 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.035 0.965 34 H 0.117 0.883 35 H 0.063 0.937 36 H 0.420 0.580 37 H 0.414 0.586 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.046 0.954 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.064 0.936 47 H 0.084 0.916 48 H 0.031 0.969 49 H -0.012 1.012 50 H 0.244 0.756 51 H 0.072 0.928 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.182 0.279 -19.552 27.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.182 4.182 4 C 0.312 3.688 5 N -0.386 5.386 6 O -0.446 6.446 7 C 0.302 3.698 8 O -0.473 6.473 9 N -0.326 5.326 10 C -0.015 4.015 11 C -0.165 4.165 12 C -0.142 4.142 13 C -0.114 4.114 14 H 0.036 0.964 15 C 0.049 3.951 16 H 0.049 0.951 17 C -0.148 4.148 18 C -0.173 4.173 19 C 0.052 3.948 20 N -0.335 5.335 21 C -0.353 4.353 22 H 0.079 0.921 23 C -0.250 4.250 24 N -0.590 5.590 25 Si 0.787 3.213 26 H -0.232 1.232 27 H -0.210 1.210 28 H -0.193 1.193 29 C 0.018 3.982 30 H 0.094 0.906 31 H 0.135 0.865 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.136 0.864 35 H 0.082 0.918 36 H 0.253 0.747 37 H 0.247 0.753 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.065 0.935 41 H 0.121 0.879 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.117 0.883 46 H 0.083 0.917 47 H 0.102 0.898 48 H 0.049 0.951 49 H 0.006 0.994 50 H 0.053 0.947 51 H 0.090 0.910 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.224 0.093 -18.805 26.187 hybrid contribution 1.964 1.113 0.108 2.259 sum -16.261 1.206 -18.697 24.808 Atomic orbital electron populations 1.22260 0.87026 1.05173 1.06140 1.21140 1.01550 0.97813 0.90169 1.21695 1.00669 0.91106 1.04700 1.20039 0.79544 0.83434 0.85809 1.43493 1.55009 1.33893 1.06194 1.90868 1.38778 1.27730 1.87197 1.20839 0.79601 0.82132 0.87181 1.90751 1.37698 1.67526 1.51283 1.48096 1.52581 1.12021 1.19855 1.22225 0.93881 0.93355 0.92035 1.21868 1.01241 0.95836 0.97593 1.21563 0.99700 0.97842 0.95104 1.21717 0.97079 0.95243 0.97326 0.96420 1.21225 0.92263 0.92140 0.89446 0.95107 1.22628 0.95456 1.02488 0.94214 1.22881 0.99062 0.98230 0.97149 1.21203 0.91410 0.93088 0.89049 1.44708 1.14782 1.59317 1.14652 1.19053 0.91579 1.13768 1.10940 0.92115 1.25461 1.01848 0.98757 0.98974 1.70106 1.37905 1.31274 1.19731 0.85390 0.80979 0.78255 0.76698 1.23167 1.20991 1.19278 1.21271 0.98358 0.93704 0.84820 0.90591 0.86549 0.90061 0.94563 0.86404 0.91772 0.74747 0.75323 0.88608 0.88988 0.93546 0.87945 0.91278 0.89321 0.90460 0.88333 0.91700 0.89766 0.95062 0.99360 0.94675 0.90982 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.10 71.98 0.58 -1.45 16 2 C -0.10 -2.42 0.60 -53.67 -0.03 -2.46 16 3 C -0.12 -2.76 7.65 71.98 0.55 -2.21 16 4 C 0.53 11.95 5.05 87.66 0.44 12.39 16 5 N -0.82 -8.20 8.63 -173.53 -1.50 -9.69 16 6 O -0.57 -18.82 13.43 -3.02 -0.04 -18.86 16 7 C 0.51 20.19 5.94 87.66 0.52 20.71 16 8 O -0.59 -31.09 15.38 -3.01 -0.05 -31.14 16 9 N -0.60 -21.49 2.84 -818.89 -2.32 -23.81 16 10 C 0.11 2.61 3.63 86.37 0.31 2.92 16 11 C -0.13 -3.27 5.87 30.67 0.18 -3.09 16 12 C -0.10 -2.92 4.87 30.62 0.15 -2.77 16 13 C -0.09 -3.74 2.10 -10.71 -0.02 -3.76 16 14 H 0.02 0.87 8.10 -2.39 -0.02 0.85 16 15 C 0.16 6.63 2.98 45.34 0.14 6.76 16 16 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 17 C -0.11 -3.59 5.18 31.78 0.16 -3.43 16 18 C -0.13 -5.01 7.08 31.99 0.23 -4.79 16 19 C 0.18 9.25 5.43 86.86 0.47 9.72 16 20 N -0.61 -33.26 2.33 -668.23 -1.56 -34.82 16 21 C -0.22 -13.86 9.90 84.03 0.83 -13.03 16 22 H 0.06 3.79 7.83 -2.91 -0.02 3.76 16 23 C -0.06 -3.60 5.47 84.86 0.46 -3.14 16 24 N -0.94 -61.77 10.53 21.65 0.23 -61.54 16 25 Si 0.96 52.23 29.55 68.60 2.03 54.25 16 26 H -0.30 -17.21 7.11 99.48 0.71 -16.50 16 27 H -0.28 -14.99 7.11 99.48 0.71 -14.29 16 28 H -0.27 -13.80 7.11 99.48 0.71 -13.10 16 29 C 0.14 6.07 5.28 86.36 0.46 6.53 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.12 0.50 7.40 -2.39 -0.02 0.49 16 32 H 0.08 1.09 4.79 -2.39 -0.01 1.08 16 33 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.12 1.24 7.70 -2.39 -0.02 1.22 16 35 H 0.06 1.61 8.01 -2.39 -0.02 1.60 16 36 H 0.42 0.97 7.68 -92.71 -0.71 0.25 16 37 H 0.41 3.26 8.93 -92.71 -0.83 2.43 16 38 H 0.10 2.00 3.23 -2.39 -0.01 1.99 16 39 H 0.09 1.68 7.98 -2.39 -0.02 1.66 16 40 H 0.05 1.54 6.70 -2.39 -0.02 1.52 16 41 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.09 2.01 6.95 -2.39 -0.02 2.00 16 44 H 0.08 2.33 5.44 -2.39 -0.01 2.32 16 45 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 47 H 0.08 2.67 8.14 -2.39 -0.02 2.66 16 48 H 0.03 1.84 6.85 -2.39 -0.02 1.82 16 49 H -0.01 -0.67 8.08 -2.39 -0.02 -0.69 16 50 H 0.24 15.66 8.31 -92.70 -0.77 14.89 16 51 H 0.07 2.81 6.07 -2.39 -0.01 2.79 16 52 H 0.04 2.41 6.58 -2.38 -0.02 2.40 16 Total: -1.00 -95.37 380.88 1.63 -93.73 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -0.59 Total: 12.96 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 5.43 Total: 18.91 kcal Atomic # 7 Polarization: -124.72 SS G_CDS: -5.15 Total: -129.86 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -0.09 Total: -50.00 kcal Atomic # 14 Polarization: 52.23 SS G_CDS: 2.03 Total: 54.25 kcal Total: -95.37 1.63 -93.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963318160.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.239 kcal (2) G-P(sol) polarization free energy of solvation -95.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds