Wall clock time and date at job start Tue Mar 31 2020 19:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46749 * 2 1 4 4 H 1.09002 * 109.87435 * 55.52751 * 3 2 1 5 5 C 1.54319 * 109.88333 * 294.50689 * 3 2 1 6 6 C 1.55156 * 102.94154 * 218.23782 * 5 3 2 7 7 C 1.54910 * 101.58369 * 35.50127 * 6 5 3 8 8 N 1.47295 * 109.99994 * 176.58491 * 3 2 1 9 9 C 1.34780 * 125.78922 * 298.42836 * 8 3 2 10 10 O 1.21346 * 120.00129 * 4.64118 * 9 8 3 11 11 C 1.49444 * 119.99544 * 184.63868 * 9 8 3 12 12 O 1.21349 * 120.00349 * 359.97438 * 11 9 8 13 13 N 1.34784 * 120.00026 * 180.02562 * 11 9 8 14 14 C 1.46495 * 120.00298 * 179.97438 * 13 11 9 15 15 H 1.09007 * 110.88643 * 37.42723 * 14 13 11 16 16 C 1.54905 * 111.00874 * 273.54530 * 14 13 11 17 17 N 1.47426 * 104.83169 * 278.93777 * 16 14 13 18 18 C 1.36931 * 125.64827 * 155.83636 * 17 16 14 19 19 H 1.07998 * 119.99963 * 180.02562 * 18 17 16 20 20 C 1.38815 * 120.00436 * 0.02562 * 18 17 16 21 21 N 1.31627 * 119.99389 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00279 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47113 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47134 * 120.00321 * 22 20 18 25 25 H 1.48500 * 109.46757 * 240.00150 * 22 20 18 26 26 C 1.47017 * 108.70164 * 335.86561 * 17 16 14 27 27 C 1.54329 * 107.27360 * 1.06403 * 26 17 16 28 28 C 1.52999 * 110.71699 * 263.82970 * 27 26 17 29 29 C 1.53001 * 110.72121 * 140.55555 * 27 26 17 30 30 H 1.09001 * 109.46904 * 65.02212 * 1 2 3 31 31 H 1.08999 * 109.46787 * 185.01984 * 1 2 3 32 32 H 1.08992 * 109.47228 * 305.02241 * 1 2 3 33 33 H 1.09004 * 109.47539 * 240.00248 * 2 1 3 34 34 H 1.08994 * 109.47314 * 119.99849 * 2 1 3 35 35 H 1.08997 * 110.72205 * 99.87506 * 5 3 2 36 36 H 1.09000 * 110.72057 * 336.59912 * 5 3 2 37 37 H 1.09004 * 111.00531 * 277.42524 * 6 5 3 38 38 H 1.08999 * 111.00604 * 153.57810 * 6 5 3 39 39 H 1.08999 * 110.36964 * 81.83074 * 7 6 5 40 40 H 1.09002 * 110.36720 * 204.04207 * 7 6 5 41 41 H 0.96998 * 119.99533 * 359.97438 * 13 11 9 42 42 H 1.09003 * 110.36511 * 37.77276 * 16 14 13 43 43 H 1.08998 * 110.37012 * 159.98174 * 16 14 13 44 44 H 0.97003 * 119.99201 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.88633 * 120.47823 * 26 17 16 46 46 H 1.08998 * 109.88771 * 241.64578 * 26 17 16 47 47 H 1.09004 * 109.46929 * 173.52160 * 28 27 26 48 48 H 1.09001 * 109.47373 * 293.51679 * 28 27 26 49 49 H 1.09000 * 109.47420 * 53.52443 * 28 27 26 50 50 H 1.08996 * 109.46936 * 306.47594 * 29 27 26 51 51 H 1.08999 * 109.46824 * 66.47743 * 29 27 26 52 52 H 1.09001 * 109.46750 * 186.47806 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6164 1.9853 0.8451 5 6 1.6473 2.1380 -1.3205 6 6 2.8921 3.0080 -1.6384 7 6 4.0422 2.1025 -1.1316 8 7 3.5105 1.4571 0.0825 9 6 4.2480 0.9636 1.0969 10 8 3.7069 0.3767 2.0109 11 6 5.7321 1.1392 1.0961 12 8 6.2732 1.7257 0.1820 13 7 6.4697 0.6453 2.1103 14 6 7.9246 0.8170 2.1093 15 1 8.2004 1.7939 1.7120 16 6 8.6174 -0.3201 1.3178 17 7 8.6798 -1.4522 2.2601 18 6 8.7659 -2.7744 1.9145 19 1 8.8059 -3.5319 2.6832 20 6 8.8018 -3.1411 0.5762 21 7 8.7535 -2.2178 -0.3606 22 14 8.9185 -4.9449 0.1048 23 1 8.9589 -5.7763 1.3346 24 1 7.7350 -5.3214 -0.7093 25 1 10.1553 -5.1708 -0.6856 26 6 8.6334 -0.9264 3.6323 27 6 8.5102 0.6086 3.5310 28 6 9.8839 1.2711 3.6531 29 6 7.5516 1.1461 4.5955 30 1 -0.3633 0.4340 -0.9316 31 1 -0.3633 -1.0237 0.0899 32 1 -0.3633 0.5897 0.8415 33 1 1.8935 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.7656 2.7632 -1.1797 36 1 1.4789 1.4035 -2.1080 37 1 2.8630 3.9480 -1.0872 38 1 2.9796 3.1879 -2.7099 39 1 4.2928 1.3521 -1.8814 40 1 4.9190 2.7029 -0.8891 41 1 6.0372 0.1762 2.8409 42 1 8.0260 -0.5876 0.4421 43 1 9.6209 -0.0174 1.0188 44 1 8.7790 -2.4741 -1.2958 45 1 7.7689 -1.3339 4.1564 46 1 9.5488 -1.1906 4.1617 47 1 9.7895 2.3405 3.4646 48 1 10.2758 1.1125 4.6578 49 1 10.5650 0.8324 2.9239 50 1 6.5997 0.6199 4.5262 51 1 7.9823 0.9895 5.5845 52 1 7.3902 2.2120 4.4340 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977440027.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:15 Heat of formation + Delta-G solvation = -42.529431 kcal Electronic energy + Delta-G solvation = -31486.726331 eV Core-core repulsion = 27486.949998 eV Total energy + Delta-G solvation = -3999.776333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.65826 -39.34330 -37.90745 -37.32945 -33.92245 -33.56272 -33.01401 -31.55530 -30.69712 -28.35155 -27.93353 -26.97716 -25.64035 -25.27220 -23.65467 -22.76677 -21.99327 -20.83613 -20.03576 -19.49621 -18.57592 -17.31452 -16.96591 -16.69272 -16.08286 -15.56531 -15.20312 -14.80632 -14.63076 -14.17409 -13.89481 -13.86485 -13.76386 -13.58162 -13.35843 -13.15102 -13.10886 -12.73112 -12.44209 -12.22254 -12.15801 -11.92933 -11.79099 -11.74226 -11.51469 -11.33948 -11.30122 -11.18496 -11.03139 -10.95457 -10.82391 -10.78000 -10.49593 -10.40203 -10.19136 -9.96010 -9.80826 -9.69611 -9.09768 -8.72839 -8.63807 -8.43310 -6.80723 -5.62750 -3.05036 1.80504 2.54571 3.40951 3.46377 3.48893 3.60781 3.78784 4.41632 4.46065 4.50043 4.66913 4.82200 4.95089 5.02147 5.06637 5.18061 5.23366 5.27633 5.29223 5.37036 5.53460 5.54991 5.58507 5.61386 5.73428 5.77078 5.83554 5.88636 5.92465 5.93573 6.02269 6.05575 6.07652 6.08106 6.16129 6.17728 6.27433 6.36580 6.40118 6.49274 6.58493 6.67783 6.72328 6.93717 7.30296 7.43649 7.63033 7.68974 7.87756 8.07608 8.38271 8.47041 9.22875 9.84402 10.47996 11.40485 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010272 B = 0.003937 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.139623 B = 7109.999572 C = 8464.606001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.137 3.863 4 H 0.077 0.923 5 C -0.127 4.127 6 C -0.136 4.136 7 C 0.092 3.908 8 N -0.591 5.591 9 C 0.525 3.475 10 O -0.523 6.523 11 C 0.509 3.491 12 O -0.522 6.522 13 N -0.668 5.668 14 C 0.121 3.879 15 H 0.089 0.911 16 C 0.147 3.853 17 N -0.601 5.601 18 C -0.222 4.222 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.918 5.918 22 Si 0.912 3.088 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.142 3.858 27 C -0.086 4.086 28 C -0.128 4.128 29 C -0.134 4.134 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.407 0.593 42 H 0.114 0.886 43 H 0.024 0.976 44 H 0.251 0.749 45 H 0.023 0.977 46 H 0.026 0.974 47 H 0.051 0.949 48 H 0.055 0.945 49 H 0.064 0.936 50 H 0.054 0.946 51 H 0.056 0.944 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.301 12.386 1.416 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.035 3.965 4 H 0.095 0.905 5 C -0.165 4.165 6 C -0.174 4.174 7 C -0.030 4.030 8 N -0.326 5.326 9 C 0.309 3.691 10 O -0.399 6.399 11 C 0.289 3.711 12 O -0.399 6.399 13 N -0.320 5.320 14 C 0.016 3.984 15 H 0.107 0.893 16 C 0.022 3.978 17 N -0.327 5.327 18 C -0.351 4.351 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.567 5.567 22 Si 0.743 3.257 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.016 3.984 27 C -0.087 4.087 28 C -0.185 4.185 29 C -0.192 4.192 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.126 0.874 41 H 0.244 0.756 42 H 0.131 0.869 43 H 0.042 0.958 44 H 0.062 0.938 45 H 0.041 0.959 46 H 0.043 0.957 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.083 0.917 50 H 0.073 0.927 51 H 0.075 0.925 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.107 12.300 1.159 17.298 hybrid contribution -0.068 -1.312 0.010 1.314 sum -12.175 10.988 1.169 16.442 Atomic orbital electron populations 1.21703 0.95136 1.01904 1.01575 1.21935 0.96061 0.96066 1.03744 1.21777 0.79467 0.96885 0.98415 0.90524 1.22741 0.98348 0.99070 0.96382 1.22849 0.94333 0.98299 1.01928 1.22731 0.97935 0.96375 0.85971 1.48369 1.06748 1.57750 1.19738 1.20054 0.88141 0.79278 0.81670 1.90715 1.73245 1.40276 1.35669 1.19752 0.87182 0.80759 0.83383 1.90663 1.72811 1.41901 1.34528 1.45629 1.07879 1.54889 1.23559 1.22685 0.78019 1.01235 0.96444 0.89297 1.22301 0.97642 0.83599 0.94305 1.44457 1.86575 1.02524 0.99154 1.19090 1.42884 0.81530 0.91560 0.90450 1.24780 1.02395 0.97722 0.95622 1.69806 1.57349 1.30172 0.99358 0.86034 0.77223 0.84320 0.78138 1.20547 1.21843 1.21768 1.21436 0.98103 0.89803 0.89095 1.21848 0.95764 0.97008 0.94115 1.21686 0.95486 0.99481 1.01879 1.21749 0.98797 1.00476 0.98134 0.92715 0.92496 0.92693 0.91665 0.90106 0.90066 0.90249 0.90676 0.89705 0.90984 0.87376 0.75563 0.86885 0.95840 0.93791 0.95864 0.95657 0.93023 0.92568 0.91672 0.92696 0.92499 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.66 37.16 0.36 -0.96 16 2 C -0.14 -1.68 5.40 -26.73 -0.14 -1.83 16 3 C 0.14 1.60 2.95 -66.80 -0.20 1.40 16 4 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 5 C -0.13 -1.08 5.61 -24.90 -0.14 -1.22 16 6 C -0.14 -1.20 7.08 -24.58 -0.17 -1.37 16 7 C 0.09 1.17 6.22 -2.53 -0.02 1.16 16 8 N -0.59 -8.60 3.08 -163.32 -0.50 -9.11 16 9 C 0.52 9.24 7.74 -11.59 -0.09 9.15 16 10 O -0.52 -9.93 15.33 5.50 0.08 -9.84 16 11 C 0.51 9.67 7.85 -11.58 -0.09 9.58 16 12 O -0.52 -10.50 13.45 5.50 0.07 -10.42 16 13 N -0.67 -12.56 4.68 -52.16 -0.24 -12.80 16 14 C 0.12 2.33 2.56 -65.79 -0.17 2.16 16 15 H 0.09 1.67 7.63 -51.93 -0.40 1.28 16 16 C 0.15 3.59 5.27 -2.53 -0.01 3.58 16 17 N -0.60 -15.16 3.39 -170.08 -0.58 -15.74 16 18 C -0.22 -6.21 10.27 -15.06 -0.15 -6.36 16 19 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -27.20 10.09 55.49 0.56 -26.64 16 22 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 C 0.14 2.88 6.41 -3.06 -0.02 2.86 16 27 C -0.09 -1.44 0.81 -152.67 -0.12 -1.56 16 28 C -0.13 -1.90 8.41 37.16 0.31 -1.59 16 29 C -0.13 -1.84 8.07 37.16 0.30 -1.54 16 30 H 0.05 0.41 7.58 -51.93 -0.39 0.02 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 34 H 0.08 1.21 6.63 -51.93 -0.34 0.87 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.64 7.79 -51.93 -0.40 0.24 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.11 1.54 5.89 -51.93 -0.31 1.23 16 41 H 0.41 7.49 6.36 -40.82 -0.26 7.23 16 42 H 0.11 3.22 5.87 -51.93 -0.31 2.92 16 43 H 0.02 0.61 7.81 -51.93 -0.41 0.21 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.02 0.47 7.76 -51.93 -0.40 0.07 16 46 H 0.03 0.52 7.84 -51.93 -0.41 0.11 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.06 1.09 7.58 -51.93 -0.39 0.70 16 50 H 0.05 0.77 6.35 -51.93 -0.33 0.44 16 51 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 52 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 399.56 15.07 6.02 6.02 Total: -1.00 -31.85 399.56 -9.03 -40.88 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -8.96 Total: 7.12 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: -0.45 Total: 13.09 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: -0.76 Total: -64.29 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.16 Total: -20.27 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.85 -9.03 -40.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977440027.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.649 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds