Wall clock time and date at job start Tue Mar 31 2020 19:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47116 * 2 1 4 4 H 1.09002 * 109.87509 * 53.53863 * 3 2 1 5 5 C 1.54321 * 109.88174 * 292.36352 * 3 2 1 6 6 C 1.55161 * 102.94290 * 218.39275 * 5 3 2 7 7 C 1.54910 * 101.58190 * 35.49862 * 6 5 3 8 8 N 1.47023 * 109.87875 * 174.55621 * 3 2 1 9 9 C 1.34768 * 125.64866 * 298.38782 * 8 3 2 10 10 O 1.21348 * 120.00283 * 4.61222 * 9 8 3 11 11 C 1.49459 * 120.00049 * 184.61122 * 9 8 3 12 12 O 1.21339 * 119.99815 * 359.97438 * 11 9 8 13 13 N 1.34775 * 119.99809 * 180.02562 * 11 9 8 14 14 C 1.46507 * 119.99749 * 179.97438 * 13 11 9 15 15 H 1.08999 * 110.88444 * 328.87887 * 14 13 11 16 16 C 1.54913 * 111.00265 * 92.80419 * 14 13 11 17 17 N 1.47422 * 104.83090 * 81.06337 * 16 14 13 18 18 C 1.36941 * 125.64830 * 204.17344 * 17 16 14 19 19 H 1.07997 * 119.99676 * 179.97438 * 18 17 16 20 20 C 1.38810 * 119.99853 * 359.94740 * 18 17 16 21 21 N 1.31617 * 120.00087 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99935 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47429 * 90.00178 * 22 20 18 24 24 H 1.48507 * 109.47396 * 209.99936 * 22 20 18 25 25 H 1.48499 * 109.47448 * 329.99828 * 22 20 18 26 26 C 1.47025 * 108.70593 * 24.13054 * 17 16 14 27 27 C 1.54327 * 107.26718 * 358.93776 * 26 17 16 28 28 C 1.53003 * 110.71939 * 219.44569 * 27 26 17 29 29 C 1.53002 * 110.72084 * 96.17264 * 27 26 17 30 30 H 1.09004 * 109.46898 * 305.02014 * 1 2 3 31 31 H 1.09003 * 109.46894 * 65.01624 * 1 2 3 32 32 H 1.09004 * 109.47195 * 185.01726 * 1 2 3 33 33 H 1.09000 * 109.47285 * 239.99409 * 2 1 3 34 34 H 1.09004 * 109.47159 * 119.99966 * 2 1 3 35 35 H 1.08998 * 110.72085 * 336.75161 * 5 3 2 36 36 H 1.08997 * 110.72230 * 100.02844 * 5 3 2 37 37 H 1.09002 * 110.99822 * 277.42771 * 6 5 3 38 38 H 1.08995 * 111.03628 * 153.58960 * 6 5 3 39 39 H 1.08993 * 110.36976 * 204.15155 * 7 6 5 40 40 H 1.09006 * 110.45667 * 81.87971 * 7 6 5 41 41 H 0.97003 * 120.00329 * 359.97438 * 13 11 9 42 42 H 1.08998 * 110.36667 * 199.90217 * 16 14 13 43 43 H 1.09006 * 110.36390 * 322.22680 * 16 14 13 44 44 H 0.97005 * 120.00306 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.87951 * 239.52351 * 26 17 16 46 46 H 1.08995 * 110.01315 * 118.42516 * 26 17 16 47 47 H 1.08994 * 109.47311 * 173.52227 * 28 27 26 48 48 H 1.09003 * 109.46782 * 293.52574 * 28 27 26 49 49 H 1.09000 * 109.47065 * 53.52156 * 28 27 26 50 50 H 1.08998 * 109.46771 * 306.47877 * 29 27 26 51 51 H 1.09004 * 109.46844 * 66.47397 * 29 27 26 52 52 H 1.08996 * 109.47225 * 186.47389 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5892 1.9950 0.8244 5 6 1.6944 2.1214 -1.3421 6 6 2.9515 2.9845 -1.6289 7 6 4.0813 2.0832 -1.0713 8 7 3.5043 1.4551 0.1312 9 6 4.2034 0.9719 1.1771 10 8 3.6280 0.3983 2.0786 11 6 5.6874 1.1423 1.2269 12 8 6.2628 1.7153 0.3253 13 7 6.3865 0.6586 2.2727 14 6 7.8413 0.8251 2.3212 15 1 8.2655 0.8300 1.3172 16 6 8.2274 2.1108 3.0944 17 7 8.1514 1.7326 4.5173 18 6 7.9479 2.5939 5.5623 19 1 7.9075 2.2163 6.5733 20 6 7.7941 3.9524 5.3221 21 7 7.8434 4.4126 4.0899 22 14 7.5173 5.1274 6.7475 23 1 8.8273 5.6170 7.2471 24 1 6.7009 6.2797 6.2880 25 1 6.8036 4.4200 7.8409 26 6 8.3291 0.2773 4.6285 27 6 8.4980 -0.2743 3.1972 28 6 7.7597 -1.6050 3.0392 29 6 9.9796 -0.4308 2.8487 30 1 -0.3633 0.5898 0.8416 31 1 -0.3633 0.4341 -0.9315 32 1 -0.3634 -1.0238 0.0899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.5509 1.3769 -2.1252 36 1 0.8100 2.7502 -1.2397 37 1 2.9060 3.9316 -1.0913 38 1 3.0763 3.1505 -2.6989 39 1 4.9502 2.6850 -0.8052 40 1 4.3571 1.3223 -1.8015 41 1 5.9265 0.2001 2.9933 42 1 9.2411 2.4181 2.8373 43 1 7.5205 2.9113 2.8764 44 1 7.7355 5.3619 3.9220 45 1 7.4514 -0.1685 5.0965 46 1 9.2176 0.0541 5.2191 47 1 7.7948 -1.9185 1.9959 48 1 8.2371 -2.3615 3.6622 49 1 6.7213 -1.4832 3.3472 50 1 10.4955 0.5133 3.0233 51 1 10.4201 -1.2068 3.4748 52 1 10.0786 -0.7105 1.7999 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977440029.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:18 Heat of formation + Delta-G solvation = -43.102846 kcal Electronic energy + Delta-G solvation = -31409.265568 eV Core-core repulsion = 27409.464370 eV Total energy + Delta-G solvation = -3999.801198 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.68892 -39.35640 -37.92430 -37.34863 -33.92540 -33.58793 -33.03512 -31.57232 -30.69880 -28.35934 -27.97233 -26.96802 -25.64181 -25.28627 -23.65844 -22.78780 -22.00487 -20.85817 -20.04670 -19.52835 -18.58891 -17.33079 -16.98716 -16.71912 -16.00807 -15.69798 -15.18613 -14.83100 -14.51728 -14.35302 -13.93057 -13.77999 -13.74649 -13.55269 -13.44073 -13.16306 -13.13268 -12.74827 -12.46905 -12.26640 -12.16542 -11.92182 -11.79416 -11.77326 -11.53571 -11.37051 -11.28782 -11.18083 -11.03055 -10.97339 -10.82936 -10.77554 -10.53346 -10.40820 -10.19715 -9.99294 -9.82873 -9.68870 -9.12100 -8.69627 -8.68798 -8.44601 -6.81428 -5.63390 -3.05636 1.78467 2.53287 3.41184 3.46242 3.48247 3.56247 3.78688 4.40456 4.45337 4.49846 4.64814 4.80876 4.96443 5.00058 5.02562 5.14299 5.24131 5.25096 5.30218 5.35063 5.51390 5.53339 5.58109 5.61343 5.73227 5.77775 5.79131 5.86830 5.89659 5.94143 6.02168 6.02399 6.03052 6.08719 6.13983 6.16035 6.28472 6.35248 6.37277 6.49338 6.58164 6.66820 6.72391 6.93610 7.28506 7.42373 7.62389 7.67863 7.85913 8.06254 8.36875 8.44883 9.22222 9.83811 10.47356 11.39920 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010943 B = 0.003705 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.168819 B = 7554.772655 C = 8722.527170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.135 3.865 4 H 0.079 0.921 5 C -0.127 4.127 6 C -0.137 4.137 7 C 0.093 3.907 8 N -0.591 5.591 9 C 0.524 3.476 10 O -0.522 6.522 11 C 0.509 3.491 12 O -0.525 6.525 13 N -0.666 5.666 14 C 0.120 3.880 15 H 0.092 0.908 16 C 0.147 3.853 17 N -0.601 5.601 18 C -0.223 4.223 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.919 5.919 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.141 3.859 27 C -0.087 4.087 28 C -0.133 4.133 29 C -0.128 4.128 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.069 0.931 41 H 0.409 0.591 42 H 0.024 0.976 43 H 0.113 0.887 44 H 0.252 0.748 45 H 0.023 0.977 46 H 0.025 0.975 47 H 0.052 0.948 48 H 0.055 0.945 49 H 0.054 0.946 50 H 0.064 0.936 51 H 0.055 0.945 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.393 -9.169 -12.694 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C 0.032 3.968 4 H 0.097 0.903 5 C -0.165 4.165 6 C -0.175 4.175 7 C -0.029 4.029 8 N -0.325 5.325 9 C 0.308 3.692 10 O -0.397 6.397 11 C 0.289 3.711 12 O -0.403 6.403 13 N -0.317 5.317 14 C 0.015 3.985 15 H 0.110 0.890 16 C 0.021 3.979 17 N -0.327 5.327 18 C -0.351 4.351 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.744 3.256 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.015 3.985 27 C -0.088 4.088 28 C -0.190 4.190 29 C -0.185 4.185 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.128 0.872 40 H 0.087 0.913 41 H 0.245 0.755 42 H 0.042 0.958 43 H 0.130 0.870 44 H 0.063 0.937 45 H 0.041 0.959 46 H 0.043 0.957 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.073 0.927 50 H 0.083 0.917 51 H 0.074 0.926 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.253 -8.873 -12.708 18.051 hybrid contribution -0.307 0.481 1.148 1.281 sum -9.560 -8.393 -11.560 17.189 Atomic orbital electron populations 1.21708 0.95107 1.01848 1.01757 1.21924 0.96176 0.96131 1.03324 1.21758 0.79784 0.96865 0.98367 0.90341 1.22735 0.98571 0.99157 0.95994 1.22857 0.94226 0.98657 1.01773 1.22724 0.97890 0.96485 0.85850 1.48300 1.06995 1.58414 1.18839 1.20053 0.88412 0.79352 0.81413 1.90721 1.71284 1.41043 1.36699 1.19764 0.87341 0.80509 0.83469 1.90652 1.70671 1.41306 1.37633 1.45613 1.08472 1.55642 1.21981 1.22714 0.77731 0.98378 0.99708 0.88964 1.22314 1.00255 0.93116 0.82183 1.44454 1.84730 1.00489 1.03038 1.19048 1.41754 0.87655 0.86682 0.90487 1.24773 1.02267 0.96786 0.96653 1.69784 1.56804 1.12921 1.17257 0.86099 0.77623 0.80735 0.81187 1.21654 1.21731 1.20727 1.21435 0.97844 0.86460 0.92723 1.21858 0.95805 0.94249 0.96880 1.21737 0.99960 0.96133 1.01218 1.21686 0.94115 1.02243 1.00486 0.92524 0.92705 0.92567 0.91919 0.90171 0.90384 0.90018 0.90403 0.89734 0.87197 0.91318 0.75462 0.95783 0.86978 0.93735 0.95871 0.95665 0.92860 0.92586 0.92695 0.91686 0.92593 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.69 37.16 0.36 -0.88 16 2 C -0.14 -1.49 5.41 -26.73 -0.14 -1.63 16 3 C 0.14 1.56 2.92 -66.95 -0.20 1.37 16 4 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 5 C -0.13 -1.06 5.72 -24.90 -0.14 -1.20 16 6 C -0.14 -1.25 7.09 -24.58 -0.17 -1.42 16 7 C 0.09 1.14 6.23 -2.53 -0.02 1.12 16 8 N -0.59 -8.46 3.06 -163.52 -0.50 -8.96 16 9 C 0.52 9.12 7.73 -11.58 -0.09 9.03 16 10 O -0.52 -9.86 15.28 5.50 0.08 -9.77 16 11 C 0.51 9.54 7.86 -11.58 -0.09 9.44 16 12 O -0.53 -10.35 13.35 5.51 0.07 -10.28 16 13 N -0.67 -12.49 4.54 -52.15 -0.24 -12.73 16 14 C 0.12 2.30 2.67 -65.78 -0.18 2.12 16 15 H 0.09 1.74 7.44 -51.93 -0.39 1.36 16 16 C 0.15 3.57 5.27 -2.53 -0.01 3.55 16 17 N -0.60 -15.08 3.39 -170.07 -0.58 -15.66 16 18 C -0.22 -6.20 10.27 -15.06 -0.15 -6.36 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -27.08 10.09 55.49 0.56 -26.52 16 22 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.14 2.87 6.41 -3.06 -0.02 2.85 16 27 C -0.09 -1.45 0.80 -152.67 -0.12 -1.57 16 28 C -0.13 -1.84 8.07 37.16 0.30 -1.54 16 29 C -0.13 -1.90 8.41 37.16 0.31 -1.59 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.64 8.01 -51.93 -0.42 0.23 16 34 H 0.08 1.08 6.55 -51.93 -0.34 0.74 16 35 H 0.08 0.57 7.76 -51.93 -0.40 0.16 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.11 1.62 5.89 -51.93 -0.31 1.31 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.41 7.59 6.65 -40.82 -0.27 7.32 16 42 H 0.02 0.62 7.80 -51.93 -0.41 0.22 16 43 H 0.11 3.17 5.87 -51.93 -0.30 2.87 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.02 0.47 7.76 -51.93 -0.40 0.07 16 46 H 0.03 0.51 7.84 -51.93 -0.41 0.11 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.05 0.78 6.48 -51.93 -0.34 0.45 16 50 H 0.06 1.09 7.57 -51.93 -0.39 0.70 16 51 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 52 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -31.54 399.61 -9.03 -40.56 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -8.97 Total: 7.02 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -0.46 Total: 12.94 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -0.76 Total: -63.86 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: 0.16 Total: -20.05 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.54 -9.03 -40.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977440029.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.539 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds