Wall clock time and date at job start Tue Mar 31 2020 19:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46608 * 2 1 4 4 H 1.08992 * 109.29837 * 305.41478 * 3 2 1 5 5 C 1.52976 * 109.29883 * 186.07545 * 3 2 1 6 6 C 1.53354 * 108.64828 * 188.97727 * 5 3 2 7 7 H 1.08996 * 109.67190 * 187.25058 * 6 5 3 8 8 C 1.50704 * 109.67116 * 307.74346 * 6 5 3 9 9 O 1.21275 * 119.99856 * 98.07705 * 8 6 5 10 10 N 1.34774 * 119.99822 * 278.07293 * 8 6 5 11 11 C 1.46926 * 120.62961 * 175.09635 * 10 8 6 12 12 C 1.53190 * 108.77684 * 126.41373 * 11 10 8 13 13 C 1.53042 * 109.31308 * 54.63560 * 12 11 10 14 14 N 1.46498 * 109.46276 * 178.62705 * 13 12 11 15 15 C 1.46500 * 119.99613 * 60.03168 * 14 13 12 16 16 C 1.36933 * 120.00200 * 240.02436 * 14 13 12 17 17 H 1.08005 * 120.00024 * 22.70113 * 16 14 13 18 18 C 1.38815 * 120.00507 * 202.69461 * 16 14 13 19 19 N 1.31618 * 119.99540 * 13.53868 * 18 16 14 20 20 Si 1.86789 * 120.00306 * 193.54200 * 18 16 14 21 21 H 1.48507 * 109.47255 * 59.99870 * 20 18 16 22 22 H 1.48503 * 109.47382 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47305 * 299.99920 * 20 18 16 24 24 C 1.53046 * 109.52709 * 298.64455 * 13 12 11 25 25 C 1.46923 * 120.63506 * 355.12299 * 10 8 6 26 26 C 1.53071 * 108.45542 * 67.49340 * 6 5 3 27 27 C 1.50176 * 109.89284 * 311.08418 * 26 6 5 28 28 O 1.21281 * 118.24834 * 197.60684 * 27 26 6 29 29 N 1.33353 * 123.50770 * 17.57878 * 27 26 6 30 30 H 1.09002 * 109.47066 * 299.99387 * 1 2 3 31 31 H 1.08996 * 109.47354 * 59.99727 * 1 2 3 32 32 H 1.09002 * 109.46789 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47318 * 240.00716 * 2 1 3 34 34 H 1.09000 * 109.47381 * 119.99753 * 2 1 3 35 35 H 1.08997 * 109.66287 * 69.20316 * 5 3 2 36 36 H 1.08992 * 109.57288 * 308.69476 * 5 3 2 37 37 H 1.09006 * 109.58585 * 6.63026 * 11 10 8 38 38 H 1.09003 * 109.58914 * 246.20422 * 11 10 8 39 39 H 1.08996 * 109.49952 * 294.68847 * 12 11 10 40 40 H 1.09001 * 109.50226 * 174.58447 * 12 11 10 41 41 H 1.09007 * 109.45948 * 58.65379 * 13 12 11 42 42 H 1.08998 * 109.47231 * 95.11623 * 15 14 13 43 43 H 1.09007 * 109.46706 * 215.10867 * 15 14 13 44 44 H 1.08992 * 109.47365 * 335.11050 * 15 14 13 45 45 H 0.96996 * 120.00009 * 179.97438 * 19 18 16 46 46 H 1.08994 * 109.49416 * 181.30677 * 24 13 12 47 47 H 1.08995 * 109.49736 * 301.40459 * 24 13 12 48 48 H 1.09000 * 109.58408 * 353.36993 * 25 10 8 49 49 H 1.08995 * 109.59024 * 113.79565 * 25 10 8 50 50 H 1.08999 * 109.39944 * 71.21245 * 26 6 5 51 51 H 1.08993 * 109.39705 * 191.03863 * 26 6 5 52 52 H 0.97003 * 117.94875 * 177.78033 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5979 1.9809 -0.8384 5 6 3.5620 1.4408 -0.1528 6 6 4.0792 2.8666 0.0739 7 1 5.1436 2.9118 -0.1565 8 6 3.3272 3.8260 -0.8123 9 8 2.3962 4.4616 -0.3652 10 7 3.6894 3.9775 -2.1016 11 6 2.9016 4.8265 -3.0056 12 6 3.8355 5.8494 -3.6601 13 6 4.9947 5.1154 -4.3381 14 7 5.8722 6.0886 -4.9930 15 6 6.5290 7.1317 -4.2014 16 6 6.0787 6.0231 -6.3451 17 1 5.3561 5.5301 -6.9785 18 6 7.2167 6.5906 -6.9019 19 7 8.2181 6.9516 -6.1277 20 14 7.3268 6.8420 -8.7495 21 1 6.2265 7.7348 -9.1941 22 1 8.6335 7.4613 -9.0878 23 1 7.2078 5.5304 -9.4355 24 6 5.7907 4.3364 -3.2884 25 6 4.8792 3.2964 -2.6300 26 6 3.8535 3.2363 1.5420 27 6 2.4420 2.9123 1.9393 28 8 1.9960 3.4260 2.9434 29 7 1.6524 2.0906 1.2468 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8295 1.1100 -1.1563 36 1 4.0023 0.7705 0.5853 37 1 2.1299 5.3468 -2.4383 38 1 2.4386 4.2094 -3.7756 39 1 4.2275 6.5236 -2.8986 40 1 3.2828 6.4226 -4.4045 41 1 4.6006 4.4233 -5.0823 42 1 7.5321 6.8036 -3.9288 43 1 6.5936 8.0474 -4.7892 44 1 5.9502 7.3203 -3.2973 45 1 9.0134 7.3477 -6.5167 46 1 6.6297 3.8326 -3.7682 47 1 6.1643 5.0248 -2.5304 48 1 5.4123 2.8072 -1.8148 49 1 4.5775 2.5545 -3.3693 50 1 4.5445 2.6715 2.1679 51 1 4.0309 4.3030 1.6781 52 1 0.7646 1.9126 1.5947 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985549794.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:52 Heat of formation + Delta-G solvation = -56.834350 kcal Electronic energy + Delta-G solvation = -31243.798168 eV Core-core repulsion = 27243.401528 eV Total energy + Delta-G solvation = -4000.396640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.28761 -39.49920 -37.64486 -37.03326 -35.11654 -34.22794 -32.40360 -32.04342 -30.79815 -29.79016 -29.32396 -26.06903 -25.94934 -24.80827 -23.55596 -22.78840 -22.08430 -21.81947 -20.48421 -19.34851 -18.19295 -17.41838 -17.03674 -16.75581 -16.45636 -15.73084 -15.64016 -15.17228 -15.00635 -14.60608 -14.12150 -14.03916 -13.99189 -13.85117 -13.77442 -13.50363 -13.37296 -12.97373 -12.85421 -12.34951 -12.29536 -12.26216 -12.10810 -11.75056 -11.60805 -11.58701 -11.52799 -11.32742 -11.13720 -10.99805 -10.88016 -10.79122 -10.42670 -10.29459 -10.19420 -9.89055 -9.82770 -9.70870 -9.54850 -9.16585 -8.60515 -8.50206 -6.78675 -5.75190 -3.21541 2.56423 2.68767 2.98684 3.19222 3.35523 3.41904 3.42361 4.09991 4.19617 4.23644 4.43638 4.46168 4.55038 4.70595 4.78537 4.87880 5.02365 5.08533 5.19787 5.22505 5.27577 5.30010 5.34812 5.36531 5.42512 5.47572 5.51804 5.54516 5.60297 5.63907 5.68263 5.74187 5.84870 5.85891 5.97397 6.11804 6.21110 6.34526 6.45571 6.57721 6.69406 6.76223 6.93066 6.94607 7.28089 7.35947 7.45663 7.70072 7.77069 8.17159 8.20026 8.36897 9.20537 9.84439 10.33791 11.29155 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022511 B = 0.002604 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.514145 B =10750.198185 C =11198.403606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.134 4.134 3 C 0.139 3.861 4 H 0.075 0.925 5 C -0.120 4.120 6 C -0.118 4.118 7 H 0.111 0.889 8 C 0.515 3.485 9 O -0.538 6.538 10 N -0.602 5.602 11 C 0.115 3.885 12 C -0.147 4.147 13 C 0.181 3.819 14 N -0.595 5.595 15 C 0.163 3.837 16 C -0.257 4.257 17 H 0.067 0.933 18 C 0.003 3.997 19 N -0.906 5.906 20 Si 0.904 3.096 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.283 1.283 24 C -0.147 4.147 25 C 0.106 3.894 26 C -0.117 4.117 27 C 0.539 3.461 28 O -0.564 6.564 29 N -0.709 5.709 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.029 0.971 43 H 0.038 0.962 44 H -0.001 1.001 45 H 0.253 0.747 46 H 0.077 0.923 47 H 0.060 0.940 48 H 0.078 0.922 49 H 0.069 0.931 50 H 0.106 0.894 51 H 0.105 0.895 52 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.425 -15.761 11.562 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.172 4.172 3 C 0.033 3.967 4 H 0.093 0.907 5 C -0.158 4.158 6 C -0.140 4.140 7 H 0.129 0.871 8 C 0.302 3.698 9 O -0.415 6.415 10 N -0.335 5.335 11 C -0.007 4.007 12 C -0.187 4.187 13 C 0.072 3.928 14 N -0.317 5.317 15 C 0.018 3.982 16 C -0.386 4.386 17 H 0.085 0.915 18 C -0.196 4.196 19 N -0.551 5.551 20 Si 0.734 3.266 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.210 1.210 24 C -0.187 4.187 25 C -0.017 4.017 26 C -0.157 4.157 27 C 0.326 3.674 28 O -0.443 6.443 29 N -0.361 5.361 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.017 0.983 45 H 0.063 0.937 46 H 0.095 0.905 47 H 0.079 0.921 48 H 0.097 0.903 49 H 0.087 0.913 50 H 0.124 0.876 51 H 0.124 0.876 52 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.729 -14.986 12.143 21.603 hybrid contribution 0.073 0.153 -1.156 1.169 sum -9.656 -14.833 10.987 20.832 Atomic orbital electron populations 1.21799 0.95326 1.02112 1.02120 1.21918 0.96698 0.95357 1.03266 1.20997 0.95006 0.93433 0.87234 0.90718 1.21924 0.94578 0.94956 1.04366 1.21552 1.02298 0.95230 0.94880 0.87100 1.20362 0.84419 0.82859 0.82134 1.90729 1.30131 1.47171 1.73452 1.48159 1.27981 1.47872 1.09525 1.21649 0.94255 0.92691 0.92147 1.22473 0.97952 0.98118 1.00132 1.20270 0.89681 0.90546 0.92310 1.43935 1.53362 1.29793 1.04587 1.20743 0.94553 0.91549 0.91335 1.19165 1.02390 1.34672 0.82387 0.91537 1.25005 0.95116 1.01764 0.97705 1.70055 1.05391 1.46008 1.33670 0.86354 0.76816 0.78020 0.85431 1.21132 1.21677 1.20965 1.22524 0.98770 0.97821 0.99613 1.21939 0.85774 0.95484 0.98552 1.21507 0.94353 1.05100 0.94762 1.19801 0.88038 0.77104 0.82422 1.90733 1.74856 1.51494 1.27180 1.45441 1.18297 1.47665 1.24740 0.92742 0.92248 0.92179 0.90222 0.91080 0.88971 0.89474 0.89671 0.91773 0.92026 0.90920 0.91965 0.95232 0.94274 0.98292 0.93720 0.90471 0.92131 0.90332 0.91293 0.87599 0.87634 0.76778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 9.76 37.16 0.36 -0.54 16 2 C -0.13 -0.75 5.57 -26.73 -0.15 -0.90 16 3 C 0.14 1.10 2.40 -68.34 -0.16 0.93 16 4 H 0.07 0.73 7.31 -51.93 -0.38 0.35 16 5 C -0.12 -0.79 4.91 -26.56 -0.13 -0.92 16 6 C -0.12 -1.07 2.22 -91.55 -0.20 -1.27 16 7 H 0.11 0.81 6.25 -51.93 -0.32 0.48 16 8 C 0.52 6.55 5.43 -10.98 -0.06 6.50 16 9 O -0.54 -8.86 14.17 5.56 0.08 -8.78 16 10 N -0.60 -7.51 2.97 -172.79 -0.51 -8.03 16 11 C 0.12 1.58 6.44 -3.71 -0.02 1.56 16 12 C -0.15 -2.41 5.32 -26.61 -0.14 -2.55 16 13 C 0.18 3.32 2.55 -67.89 -0.17 3.15 16 14 N -0.60 -14.08 2.81 -173.43 -0.49 -14.56 16 15 C 0.16 3.89 8.04 59.85 0.48 4.38 16 16 C -0.26 -6.75 9.59 -15.06 -0.14 -6.90 16 17 H 0.07 1.70 7.82 -52.48 -0.41 1.29 16 18 C 0.00 0.07 5.09 -17.43 -0.09 -0.02 16 19 N -0.91 -25.74 10.72 55.49 0.59 -25.15 16 20 Si 0.90 21.30 29.57 -169.99 -5.03 16.27 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.15 -2.29 5.34 -26.62 -0.14 -2.43 16 25 C 0.11 1.17 6.02 -3.73 -0.02 1.15 16 26 C -0.12 -1.22 5.19 -28.10 -0.15 -1.36 16 27 C 0.54 7.08 6.40 -11.87 -0.08 7.01 16 28 O -0.56 -9.80 17.78 5.56 0.10 -9.70 16 29 N -0.71 -7.36 4.96 -54.82 -0.27 -7.63 16 30 H 0.05 0.33 6.67 -51.93 -0.35 -0.02 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.48 7.87 -51.93 -0.41 0.08 16 36 H 0.09 0.44 8.11 -51.93 -0.42 0.02 16 37 H 0.08 1.26 7.00 -51.93 -0.36 0.89 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.10 6.72 -51.93 -0.35 0.75 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.15 7.86 -51.92 -0.41 0.74 16 42 H 0.03 0.76 7.35 -51.93 -0.38 0.38 16 43 H 0.04 1.02 7.33 -51.92 -0.38 0.64 16 44 H 0.00 -0.03 6.46 -51.93 -0.34 -0.37 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 47 H 0.06 1.02 7.72 -51.93 -0.40 0.62 16 48 H 0.08 0.66 5.44 -51.93 -0.28 0.38 16 49 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.11 1.26 8.08 -51.93 -0.42 0.84 16 52 H 0.40 3.95 7.04 -40.82 -0.29 3.66 16 LS Contribution 391.20 15.07 5.90 5.90 Total: -1.00 -33.76 391.20 -9.29 -43.05 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.84 Total: 0.86 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -0.82 Total: 7.78 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.68 Total: -55.37 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.18 Total: -18.48 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.76 -9.29 -43.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985549794.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.787 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds